CF417607

Overview
NameCF417607
Unique NameCF417607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP258_ARATH (Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.775e-34
Identity = 74/170 (43.53%), Postives = 106/170 (62.35%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            C     GRAG LQ+A  +I++M + P   +W +LL  CRIH N ELA  +  R+FEL   + G  +LLS+ YA AGRW+D  + R +++++G+ K  G S +E    VH F+ GD  H +  +IY+ L EL  ++ +AGYV +TS V   VD +EK  T+R HSE+LAIA
Sbjct:  429 CMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIA 598          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP411_ARATH (Pentatricopeptide repeat-containing protein At5g40410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H15 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.028e-34
Identity = 70/171 (40.94%), Postives = 113/171 (66.08%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEME-KAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            C     GR+G LQ+A  +I++MP+ P+  VWGALL  CR++ +T+L   AA+R+FEL        V+LSN Y+A+G W+DA++ R +++ +G+ + +G S++E GN++H FV GD  H  + +I +KL+E+ ++M+ + GY   T FVL  V  D K + I  HSE++A+A
Sbjct:  377 CMVDLLGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAERLFELEPRDGRNYVMLSNIYSASGLWKDASRIRNLMKQKGLVRASGCSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSEMGYKSKTEFVLHDVGEDVKEEMINQHSEKIAMA 547          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP316_ARATH (Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.028e-34
Identity = 72/175 (41.14%), Postives = 108/175 (61.71%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGV-----KKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            C     GRAGKL+EA+ +I  MP  P  +V+G LL  CR+H N ELA +AA+++ +L   +    V L+N YA+  RWED A+ RK +++  V      K  G SW+E  N+VH F + DR H     I++KL+EL ++M+ AGY P+  F L  V+ ++K + + +HSE+LA+A
Sbjct:  426 CMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVERVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVA 600          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP249_ARATH (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.955e-34
Identity = 72/170 (42.35%), Postives = 102/170 (60.00%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            C     GRAG L+EA+ +IE MP+ P + +W +LL  CR+ GN E+AAYAA+++  L     G  VLLSN YA+AGRW D AK R  ++++G++K  G S ++   + H F +GD  H     I   L+E+ +     G+VPD S VL  VD  EK   +  HSE+LA+A
Sbjct:  612 CMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMA 781          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP206_ARATH (Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.165e-34
Identity = 79/209 (37.80%), Postives = 118/209 (56.46%), Query Frame = 2
Query:   71 LIGFLRKCA-LGILECG---MQC*LPAPSTRI*TKCLICSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELG-IVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            ++G L  C+  G +E G    Q   P        K   C     GR G+  EA  ++++MP  P E +W ++L  CRIH N  LA  AA+++F +  +      V +SN YAAAG WE     +K +R++G+KK    SWVE  +++H F + D+ H    EI +K+ EL  E+E+ GY PDTS V++ VD   K ++++YHSERLA+A
Sbjct:  556 ILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVA 764          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PPR25_ARATH (Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 6.746e-34
Identity = 70/171 (40.94%), Postives = 103/171 (60.23%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGD-RCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            C     GRAG+  EA+ +I+ M + P  +VWG+LL  CR H   ++A + A ++ E+   + G  +LLSN YA+ GRW D A+ RK+++ + V+K  G SW E  N+VH F  G    H     I + L+EL   + +AGY PD S+ L  VD +EK  +++YHSERLA+A
Sbjct:  474 CMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVA 644          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP147_ARATH (Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.151e-33
Identity = 65/164 (39.63%), Postives = 101/164 (61.59%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            G+AGKL +A+ ++ +M   P    W  LL  CR+  N  LA YAA +V  L     G   LLSN YA + +W+   + R  +RD+G+KKE G SW+E   ++H F+ GD  H +  E+ +KL +L   +   GYVP+T+FVL+ ++G++   ++R+HSE+LA+A
Sbjct:  406 GKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALA 569          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP353_ARATH (Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana GN=PCMP-H5 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.711e-33
Identity = 66/163 (40.49%), Postives = 105/163 (64.42%), Query Frame = 2
Query:  194 RAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            R+G+ ++  SVI +MP+ P++ +W ++L GC  +GN +LA  AA  +F++   +P   V ++N YAAAG+WE+  K RK +++ GV K  G SW E   + H F+A D  H    +I + L EL ++M++ GYVP TS VL  V+ ++K + + YHSE+LA+A
Sbjct:  468 RSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFLRELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVA 630          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP198_ARATH (Pentatricopeptide repeat-containing protein At2g41080 OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.711e-33
Identity = 70/164 (42.68%), Postives = 98/164 (59.76%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            GRAG L +A ++I  MPI     +W  LL+ C IH N E+A      + ++        VLL+N +A+A RW D ++ RK +RD+ VKKE G+SW E    VH F  GDR   +++EIY  L+EL  EM+  GY PDT+ VL  +D +EK   +  HSE+LA+A
Sbjct:  426 GRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVA 589          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP419_ARATH (Pentatricopeptide repeat-containing protein At5g46460, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.741e-33
Identity = 72/164 (43.90%), Postives = 101/164 (61.59%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            GR GKL+EA  +IE+M + P E VW ALL+ CR+H + +    AA  +F L   S    VLLSN YA+AGRW + +K R  ++  G+ K+ G SWV    + H F +GD+ H     IY+KLE L E++++ GY PD    L  V+ ++K + + YHSERLAIA
Sbjct:  475 GRCGKLKEAEELIERMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAIFNLDSKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRGKKHEFFSGDQPH--CSRIYEKLEFLREKLKELGYAPDYRSALHDVEDEQKEEMLWYHSERLAIA 636          
The following BLAST results are available for this feature:
BLAST of CF417607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
PP258_ARATH1.775e-3443.53Pentatricopeptide repeat-containing protein At3g26... [more]
PP411_ARATH3.028e-3440.94Pentatricopeptide repeat-containing protein At5g40... [more]
PP316_ARATH3.028e-3441.14Pentatricopeptide repeat-containing protein At4g16... [more]
PP249_ARATH3.955e-3442.35Pentatricopeptide repeat-containing protein At3g22... [more]
PP206_ARATH5.165e-3437.80Putative pentatricopeptide repeat-containing prote... [more]
PPR25_ARATH6.746e-3440.94Pentatricopeptide repeat-containing protein At1g09... [more]
PP147_ARATH1.151e-3339.63Pentatricopeptide repeat-containing protein At2g03... [more]
PP353_ARATH5.711e-3340.49Pentatricopeptide repeat-containing protein At4g37... [more]
PP198_ARATH5.711e-3342.68Pentatricopeptide repeat-containing protein At2g41... [more]
PP419_ARATH9.741e-3343.90Pentatricopeptide repeat-containing protein At5g46... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-537 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417607 ID=CF417607; Name=CF417607; organism=Citrus sinensis; type=EST; length=683bp
TTTGACTCATCAAGCTTTGTAGGCAGTTCTCTGATTTCATTGTATTCTAA
GTGCGGAGTAATTGAACCGGCTTATCGGGTTTTTGAGGAAGTGCGCGTTA
GGAATCTTGGAATGTGGAATGCAATGCTGATTGCCTGCGCCCAGCACTCG
CATATGAACAAAGTGTTTGATTTGTTCAAAGAAATGGAAAGGTCGAGCGG
GGAAATTGCAGGAAGCAATTTCAGTTATTGAGAAAATGCCCATTGCACCT
ACAGAATCTGTTTGGGGAGCCTTGTTGACAGGTTGCCGAATTCATGGAAA
CACTGAATTGGCAGCCTATGCTGCAGATAGGGTCTTTGAGTTGGGCATCG
TGAGCCCAGGCATGAATGTTTTGTTATCTAATGCTTATGCTGCTGCTGGA
AGGTGGGAAGATGCAGCCAAAGCTAGGAAGATGCTTAGGGACCAAGGGGT
AAAGAAGGAAACAGGTTTGAGTTGGGTCGAGGAGGGAAATAGAGTTCATA
CTTTTGTTGCAGGAGATAGGTGCCATGTAAGAACCAGAGAGATTTATCAG
AAGTTAGAAGAGTTAGGGGAAGAAATGGAGAAAGCTGGTTATGTTCCTGA
TACNAGTTTTGTGTTGAGAAAGGTTGATGGCGATGAGAAGAATCAAACAA
TTAGGTATCATAGTGAGAGACTGGCCATTGCTT
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