CF417607
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP354_ARATH (Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=2 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 9.741e-33 Identity = 69/170 (40.59%), Postives = 109/170 (64.12%), Query Frame = 2 Query: 173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682 C GRAG+L+ A I+ M + +W ++L C++HG+ L A+ + L I + G+ VLLSN YA+ G +E AK R +++++G+ KE G+S +E N+VH F AGDR H +++EIY L ++ E ++ GYVP+T+ VL+ ++ EK Q+++ HSERLAIA Sbjct: 402 CLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIA 571
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP285_ARATH (Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2) HSP 1 Score: 140.198 bits (352), Expect = 9.741e-33 Identity = 73/165 (44.24%), Postives = 103/165 (62.42%), Query Frame = 2 Query: 191 GRAGKLQEAISVIEKMPIAPTES-VWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682 GRAG+++EA ++ MP ++ W +LL RIH N E+ AA + +L VLL+N Y++AG W+ A + R+ +++QGV+KE G SW+E G+ VH FVAGD H ++ ++ LE L E M K GYVPDTS VL V+ DEK + HSE+LAIA Sbjct: 665 GRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIA 829
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 9.741e-33 Identity = 67/167 (40.12%), Postives = 98/167 (58.68%), Query Frame = 2 Query: 194 RAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKV----DGDEKNQTIRYHSERLAIA 682 RAG L +A I MP VW L CR+H NTEL AA ++ EL P + LSN YA AG+WE++ + R+ ++++ + KE G SW+E G+++H F GD H +IY +L+ L E+++ GYVPDT VL K+ D EK + + HSE++A+A Sbjct: 623 RAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVA 789
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP227_ARATH (Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 9.741e-33 Identity = 69/169 (40.83%), Postives = 101/169 (59.76%), Query Frame = 2 Query: 173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAI 679 C GRAG++ EA I++MP PT V G+LL CR+H + ++ R+ E+ + G V+LSN YA+AGRW D R M+ + V KE G SW++ +H F A DR H R E+ K++E+ +M++AGYVPD S VL VD ++K + + HSE+LA+ Sbjct: 398 CIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLAL 566
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP347_ARATH (Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=2 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.272e-32 Identity = 66/164 (40.24%), Postives = 107/164 (65.24%), Query Frame = 2 Query: 191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682 GRAG +++A ++IE M + + S++ LL CR+ G+TE A ++ EL + VLLSN YAAA +W++ AR M++ VKK+ G SW+E N++H FV DR + +T IY+K++++ ++++ GYVP+T F L V+ +EK + + YHSE+LA+A Sbjct: 766 GRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVA 929
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2) HSP 1 Score: 138.272 bits (347), Expect = 3.701e-32 Identity = 71/170 (41.76%), Postives = 100/170 (58.82%), Query Frame = 2 Query: 173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682 C RAG++++A I+ MP+ P +W LL C +HG+++LA +A ++ +L G VLLSN YA+ RW D K RK + GVKK G S VE GNRVH F+ GD+ H ++ IY KL+E+ + GYVP S V V+ +EK + YHSE++AIA Sbjct: 365 CMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIA 534
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP140_ARATH (Pentatricopeptide repeat-containing protein At2g01510, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=2 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.701e-32 Identity = 71/170 (41.76%), Postives = 101/170 (59.41%), Query Frame = 2 Query: 173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682 C GR+G L+EA I+KMP+ P +WGALL C +H + L AD + E +VLLSN YAAAG+W+ K R +R G KK S VE ++H F GD+ H +++ IY+KL+E+ +++ K GYVPDT V V+ +EK ++ +HSE+LAIA Sbjct: 354 CMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKLAIA 523
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 6.314e-32 Identity = 74/164 (45.12%), Postives = 103/164 (62.80%), Query Frame = 2 Query: 191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682 GRAG+L EA I +MP+ P +V+GA+L C+IH N A AA+R+FEL G +VLL+N Y AA WE + R + QG++K G S VE N VH+F +G H +++IY LE+L +++AGYVPDT+ VL V+ D K Q + HSE+LAI+ Sbjct: 586 GRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAIS 748
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP428_ARATH (Pentatricopeptide repeat-containing protein At5g50990 OS=Arabidopsis thaliana GN=PCMP-H59 PE=2 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 8.246e-32 Identity = 68/164 (41.46%), Postives = 100/164 (60.98%), Query Frame = 2 Query: 191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682 GRAG+++EA +IE MPI P +W +LL+ R + N EL A + L G VLLSN Y++ +WE A K R+++ +G++K G SW+E G +H F AGD H+ T+ IY+ LE L ++ + G+V DT VL V +EK + + YHSE+LA+A Sbjct: 313 GRAGRVKEAYELIESMPIEPDVVIWRSLLSSSRTYKNPELGEIA---IQNLSKAKSGDYVLLSNIYSSTKKWESAQKVRELMSKEGIRKAKGKSWLEFGGMIHRFKAGDTSHIETKAIYKVLEGLIQKTKSQGFVSDTDLVLMDVSEEEKEENLNYHSEKLALA 473
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP341_ARATH (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.407e-31 Identity = 70/164 (42.68%), Postives = 101/164 (61.59%), Query Frame = 2 Query: 191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682 GRAG LQ A+ IE M I P SVW LL CRIH +T LA ++++FEL + G +VLLSN ++A + AA R+ + + + K G + +E G H F +GD+ H + +EIY+KLE+L +M +AGY P+T L V+ +E+ ++ HSERLAIA Sbjct: 568 GRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIA 731 The following BLAST results are available for this feature:
BLAST of CF417607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 166
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF417607 ID=CF417607; Name=CF417607; organism=Citrus sinensis; type=EST; length=683bpback to top |