CF417607

Overview
NameCF417607
Unique NameCF417607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP417_ARATH (Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.399e-31
Identity = 72/171 (42.11%), Postives = 102/171 (59.65%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGN-RVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            C     GR G+LQEA+ +I+ M + P   VWGALL  CRIH N E+A  AA+ +FEL     G  +LLSN YA+AG W    + RK+++++G+KK   +SWV + N ++H F  G+  H  + +I  KLEEL E +   GY PD S V   V  + K   +  H+E+LA+A
Sbjct:  426 CMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALA 596          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP108_ARATH (Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.191e-30
Identity = 69/163 (42.33%), Postives = 98/163 (60.12%), Query Frame = 2
Query:  194 RAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            R+G+L+EA+  I  MP  P    W  LL+ CR  GN E+  +AA+ + EL    P    LLS+ YA+ G+W+  A+ R+ +R++ VKKE G SW++   ++H+F A D       +IY KLEEL  ++   GY PDTSFV   V+   K + + YHSERLAIA
Sbjct:  520 RSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIA 682          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP145_ARATH (Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.031e-30
Identity = 68/163 (41.72%), Postives = 101/163 (61.96%), Query Frame = 2
Query:  194 RAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLR-KVDGDEKNQTIRYHSERLAI 679
            RAG L++A   I+K+PI+PT  +W  LL  C  H N +LA   ++R+FEL     G  V+LSN YA   +WE     RK+++D+   K  G S +E  N VH F +GD     T ++++ L+E+ +E++ +GYVPDTS V+   ++  EK  T+RYHSE+LAI
Sbjct:  379 RAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAI 541          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PPR45_ARATH (Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.464e-30
Identity = 67/164 (40.85%), Postives = 95/164 (57.93%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            GRAG+LQEA   I+KMP+ P  +VWGALL  CRIH   +L   +A  +FEL   S G  +LL N YA  G+W + AK R+M+++ G+  + G SWVE   +VH F++ D+ H +T+EI   LE   E+M + G    +           +++    HSER AIA
Sbjct:  644 GRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLEGFYEKMSEVGLTKISESSSMDETEISRDEIFCGHSERKAIA 807          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP224_ARATH (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.464e-30
Identity = 65/164 (39.63%), Postives = 101/164 (61.59%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            GRAG L +A  VI+ MP+ P  +VWGALL+ C+ H + EL  YAA ++F +   + G  V LSN YAAA  W+  A+ R  ++++G+ K+ G SWVE   R+  F  GD+ H R  EI +++E +   +++ G+V +    L  ++ +E  +T+  HSER+AIA
Sbjct:  470 GRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIA 633          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP320_ARATH (Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.008e-29
Identity = 69/170 (40.59%), Postives = 97/170 (57.06%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            C      R G L +A   IE MPI P  ++WGALL GCRIH + +LA   A++VFEL   + G  VL++N YA A +WE   + RK +  +G++K  G SW+E   RV+ FVAGD  +  T  I   L ++   M + GY P T + L   +  EK + +  HSE+LA+A
Sbjct:  641 CIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMA 810          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PPR71_ARATH (Pentatricopeptide repeat-containing protein At1g34160 OS=Arabidopsis thaliana GN=PCMP-H68 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.316e-29
Identity = 64/163 (39.26%), Postives = 99/163 (60.74%), Query Frame = 2
Query:  194 RAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            RAG+L+EA  +I  M + P   +W +LL    I+ + E+A  A+  + E+G+ + G  VLLSN YAA GRW+D  + R  +  + VKK  GLS++E    +H F   D+ H + REIY+K++E+  ++ + GYV  T  VL  +  +EK   + YHSE+LA+A
Sbjct:  355 RAGRLREAHDIICSMSMIPDPVLWQSLLGASEIYSDVEMAEIASREIKEMGVNNDGDFVLLSNVYAAQGRWKDVGRVRDDMESKQVKKIPGLSYIEAKGTIHEFYNSDKSHEQWREIYEKIDEIRFKIREDGYVAQTGLVLHDIGEEEKENALCYHSEKLAVA 517          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PPR84_ARATH (Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.719e-29
Identity = 71/171 (41.52%), Postives = 97/171 (56.73%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGD-RCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            C+    GRAG++ +A+ +IE M I P  +VWGALL  C+ H   +LA  AA ++FE    + G  VLLS+  A+  +W D A  RK +R   V K  G SW+E G +VH F  G  + H     I   LE+    + +AGY PD S VL  VD +EK  ++  HSERLA+A
Sbjct:  473 CTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVA 643          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP265_ARATH (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.830e-29
Identity = 64/170 (37.65%), Postives = 104/170 (61.18%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            C     GRA +L EA  +++ M   P   VWG+LL  CRIHGN ELA  A+ R+F L   + G  VLL++ YA A  W++  + +K+L  +G++K  G  W+E   ++++FV+ D  +    +I+  L +L E+M++ GY+P T  VL +++ +EK + +  HSE+LA+A
Sbjct:  427 CMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALA 596          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP122_ARATH (Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.003e-29
Identity = 73/171 (42.69%), Postives = 100/171 (58.48%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEM-EKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            C     GR+GKLQ+A   I +MPI PT  VW  LL  C  HGN ELA     R+ EL   + G  VLLSNAYA AG+W+D A  RK +  Q +KK T  S VE G  ++ F AG++      E ++KL+E+   + ++AGY P+ +  L  V+ +EK   +  HSE+LA+A
Sbjct:  412 CMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRLKDEAGYTPEVASALYDVEEEEKEDQVSKHSEKLALA 582          
The following BLAST results are available for this feature:
BLAST of CF417607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
PP417_ARATH2.399e-3142.11Pentatricopeptide repeat-containing protein At5g44... [more]
PP108_ARATH1.191e-3042.33Putative pentatricopeptide repeat-containing prote... [more]
PP145_ARATH2.031e-3041.72Pentatricopeptide repeat-containing protein At2g02... [more]
PPR45_ARATH3.464e-3040.85Pentatricopeptide repeat-containing protein At1g15... [more]
PP224_ARATH3.464e-3039.63Pentatricopeptide repeat-containing protein At3g12... [more]
PP320_ARATH1.008e-2940.59Pentatricopeptide repeat-containing protein At4g18... [more]
PPR71_ARATH1.316e-2939.26Pentatricopeptide repeat-containing protein At1g34... [more]
PPR84_ARATH1.719e-2941.52Pentatricopeptide repeat-containing protein At1g56... [more]
PP265_ARATH3.830e-2937.65Pentatricopeptide repeat-containing protein At3g46... [more]
PP122_ARATH5.003e-2942.69Pentatricopeptide repeat-containing protein At1g74... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-537 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417607 ID=CF417607; Name=CF417607; organism=Citrus sinensis; type=EST; length=683bp
TTTGACTCATCAAGCTTTGTAGGCAGTTCTCTGATTTCATTGTATTCTAA
GTGCGGAGTAATTGAACCGGCTTATCGGGTTTTTGAGGAAGTGCGCGTTA
GGAATCTTGGAATGTGGAATGCAATGCTGATTGCCTGCGCCCAGCACTCG
CATATGAACAAAGTGTTTGATTTGTTCAAAGAAATGGAAAGGTCGAGCGG
GGAAATTGCAGGAAGCAATTTCAGTTATTGAGAAAATGCCCATTGCACCT
ACAGAATCTGTTTGGGGAGCCTTGTTGACAGGTTGCCGAATTCATGGAAA
CACTGAATTGGCAGCCTATGCTGCAGATAGGGTCTTTGAGTTGGGCATCG
TGAGCCCAGGCATGAATGTTTTGTTATCTAATGCTTATGCTGCTGCTGGA
AGGTGGGAAGATGCAGCCAAAGCTAGGAAGATGCTTAGGGACCAAGGGGT
AAAGAAGGAAACAGGTTTGAGTTGGGTCGAGGAGGGAAATAGAGTTCATA
CTTTTGTTGCAGGAGATAGGTGCCATGTAAGAACCAGAGAGATTTATCAG
AAGTTAGAAGAGTTAGGGGAAGAAATGGAGAAAGCTGGTTATGTTCCTGA
TACNAGTTTTGTGTTGAGAAAGGTTGATGGCGATGAGAAGAATCAAACAA
TTAGGTATCATAGTGAGAGACTGGCCATTGCTT
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