CF417607

Overview
NameCF417607
Unique NameCF417607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP386_ARATH (Pentatricopeptide repeat-containing protein At5g15340, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.534e-29
Identity = 69/171 (40.35%), Postives = 100/171 (58.48%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGD--EKNQTIRYHSERLAI 679
            C     GRAG ++EA  ++ +MP+ P E V G+LL  C +HG  E+A      + ++   +    +L+SN Y A GR + A   R  LR +G++K  GLS +   + VH F +GDR H RT+EIY KL E+ E +  AGYVPD S ++   +GD  EK Q +  HSE+LA+
Sbjct:  391 CMVDLLGRAGLIEEAEILMREMPVPPNEVVLGSLLGSCSVHGKVEIAERIKRELIQMSPGNTEYQILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGLSSIYVNDSVHRFSSGDRSHPRTKEIYLKLNEVIERIRSAGYVPDVSGLVSHSEGDLEEKEQALCCHSEKLAV 561          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP210_ARATH (Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.534e-29
Identity = 67/164 (40.85%), Postives = 96/164 (58.54%), Query Frame = 2
Query:  194 RAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKV-DGDEKNQTIRYHSERLAIA 682
            R+ K+ +A   I+ MPI P  S+W ++L  CR  G+ E A   + R+ EL    PG ++L SNAYAA  +W+  +  RK L+D+ + K  G SW+E G  VH F +GD    ++  IY+ LE L   M K GY+PD   V + + + +EK + I  HSERLAIA
Sbjct:  658 RSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQNLEEEEEKRRLICGHSERLAIA 821          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP274_ARATH (Pentatricopeptide repeat-containing protein At3g49710 OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.114e-28
Identity = 69/168 (41.07%), Postives = 100/168 (59.52%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVD----GDEKNQTIRYHSERLAIA 682
            GRAGKL+EA   I+ MP  P    W ALL  CR H N  LA  AA+ +  +  ++    V+L+N YA A +WE+ A  RK +R + ++K+ G SW+E   + H FVA D  H   RE+ + LEE+ ++M+K GYV D  + + K D    GDE+   + +HSE+LA+A
Sbjct:  494 GRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANMYADARKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEGDEE-MRLGHHSEKLAVA 660          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP377_ARATH (Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.456e-28
Identity = 73/207 (35.27%), Postives = 112/207 (54.11%), Query Frame = 2
Query:   74 IGFLRKCA-LGILECGMQC*LPAPSTRI*TKCL---ICSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            +G L  C+  G+++ G +C            CL    C  +  GR+G+L +A+ +IE +P  P+  +W A+L+      N E A  +A+ + ++        VL+SN YA A +W + A  RK +++ GVKKE GLSW+E    VH F  G   H   + I   LE L  +  +AGYVPD + VL  +D +EK++ +  HSERLA+A
Sbjct:  554 LGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVHYFSVGLSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALA 760          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PPR68_ARATH (Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.483e-28
Identity = 60/164 (36.59%), Postives = 99/164 (60.37%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            GRAG L+EA+  I+ +PI   + +W   L+ CR+  N EL   AA  + +L   +PG  +L+SN Y+    W+D A+ R  +  +G+K+  G S VE   + H FV+ DR H + +EIY+ L ++  +++  GY PD + +L  VD +EK + ++ HS+++AIA
Sbjct:  382 GRAGLLEEALETIQSIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPGDYLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKEIYKMLHQMEWQLKFEGYSPDLTQILLNVDEEEKKERLKGHSQKVAIA 545          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP307_ARATH (Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.235e-28
Identity = 63/171 (36.84%), Postives = 97/171 (56.73%), Query Frame = 2
Query:  170 ICSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            +C      RAG L  A   I++MPI P   VW  LL+ C +H N E+  +AA  + EL        VLLSN YA + +W+     R+ ++++GVKKE G SW+E  N +H+F  GD+ H    EI++  ++L +   + GYV D   +L ++  ++K+  I  HSE+LAI+
Sbjct:  833 VCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAIS 1003          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP295_ARATH (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.235e-28
Identity = 67/170 (39.41%), Postives = 96/170 (56.47%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            C     GR+G ++EA S I  MP+ P   +WG+LL+G R+ G+ +    A  R+ EL  ++ G  VLLSN YA  GRW +    R  +  +G+ K  G S+VE    VH FV GD     +  IY  L+E+ + + +AGYV DT  VL  ++  +K   + YHSE+LAIA
Sbjct:  343 CMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIA 512          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP235_ARATH (Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.235e-28
Identity = 62/148 (41.89%), Postives = 87/148 (58.78%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVL 616
            C     GRAG ++EA  ++ KMP+ P   VWGALL   R+H +  +A  AA ++ EL   +  +  LL N YA   RW+D  + R+ + D  +KK  G S +E     H FVAGD+ H+++ EIY KLEEL +E   A Y+PDTS +L
Sbjct:  510 CMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEEIYMKLEELAQESTFAAYLPDTSELL 657          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP223_ARATH (Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.235e-28
Identity = 71/165 (43.03%), Postives = 99/165 (60.00%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEE-MEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            GRAG+L EA+  IE MP+ P  +VWGALL  C+IH N ++A  A  +V E    + G  VL+SN Y+ +   E   + R M+R++  +K+ G S+VE   RVH F+AGDR H +T E+++ L+EL    ME AG +           G+E + T R HSERLAIA
Sbjct:  405 GRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVMELAGNMDCDR-------GEEVSSTTREHSERLAIA 562          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP215_ARATH (Pentatricopeptide repeat-containing protein At3g05340 OS=Arabidopsis thaliana GN=PCMP-E83 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.224e-28
Identity = 63/165 (38.18%), Postives = 97/165 (58.79%), Query Frame = 2
Query:  158 TKCLICSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTI 652
            T+   C     GRAG L+EA S I+ +P+ P   +W ALL  C  HG+TE+  YAA+++F+    S   ++L++N Y++ G+W++ AK  K ++  GV KETG+S +E  ++ H+FV  D+ H +   IY  L  L   M   GY PD  F+L    GD++N T+
Sbjct:  494 TEHYTCIIDMLGRAGLLKEAKSFIDSLPLKPDCKIWQALLGACSFHGDTEVGEYAAEQLFQTAPDSSSAHILIANIYSSRGKWKERAKTIKRMKAMGVTKETGISSIEIEHKTHSFVVEDKLHPQAEAIYDVLSGLFPVMVDEGYRPDKRFIL-CYTGDDRNGTV 657          
The following BLAST results are available for this feature:
BLAST of CF417607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
PP386_ARATH6.534e-2940.35Pentatricopeptide repeat-containing protein At5g15... [more]
PP210_ARATH6.534e-2940.85Pentatricopeptide repeat-containing protein At3g03... [more]
PP274_ARATH1.114e-2841.07Pentatricopeptide repeat-containing protein At3g49... [more]
PP377_ARATH1.456e-2835.27Putative pentatricopeptide repeat-containing prote... [more]
PPR68_ARATH2.483e-2836.59Pentatricopeptide repeat-containing protein At1g31... [more]
PP307_ARATH4.235e-2836.84Pentatricopeptide repeat-containing protein At4g13... [more]
PP295_ARATH4.235e-2839.41Pentatricopeptide repeat-containing protein At3g62... [more]
PP235_ARATH4.235e-2841.89Putative pentatricopeptide repeat-containing prote... [more]
PP223_ARATH4.235e-2843.03Putative pentatricopeptide repeat-containing prote... [more]
PP215_ARATH7.224e-2838.18Pentatricopeptide repeat-containing protein At3g05... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-537 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417607 ID=CF417607; Name=CF417607; organism=Citrus sinensis; type=EST; length=683bp
TTTGACTCATCAAGCTTTGTAGGCAGTTCTCTGATTTCATTGTATTCTAA
GTGCGGAGTAATTGAACCGGCTTATCGGGTTTTTGAGGAAGTGCGCGTTA
GGAATCTTGGAATGTGGAATGCAATGCTGATTGCCTGCGCCCAGCACTCG
CATATGAACAAAGTGTTTGATTTGTTCAAAGAAATGGAAAGGTCGAGCGG
GGAAATTGCAGGAAGCAATTTCAGTTATTGAGAAAATGCCCATTGCACCT
ACAGAATCTGTTTGGGGAGCCTTGTTGACAGGTTGCCGAATTCATGGAAA
CACTGAATTGGCAGCCTATGCTGCAGATAGGGTCTTTGAGTTGGGCATCG
TGAGCCCAGGCATGAATGTTTTGTTATCTAATGCTTATGCTGCTGCTGGA
AGGTGGGAAGATGCAGCCAAAGCTAGGAAGATGCTTAGGGACCAAGGGGT
AAAGAAGGAAACAGGTTTGAGTTGGGTCGAGGAGGGAAATAGAGTTCATA
CTTTTGTTGCAGGAGATAGGTGCCATGTAAGAACCAGAGAGATTTATCAG
AAGTTAGAAGAGTTAGGGGAAGAAATGGAGAAAGCTGGTTATGTTCCTGA
TACNAGTTTTGTGTTGAGAAAGGTTGATGGCGATGAGAAGAATCAAACAA
TTAGGTATCATAGTGAGAGACTGGCCATTGCTT
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