CF417607

Overview
NameCF417607
Unique NameCF417607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP410_ARATH (Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.609e-27
Identity = 59/163 (36.20%), Postives = 99/163 (60.74%), Query Frame = 2
Query:  194 RAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            RAG+L++A+S+I++MP+ P  +VW +LL   R++ N EL   A+ ++ EL   + G  VLLSN YA +  W++ +  R+ ++ +GV+K+ G S +E    VH F  GD+ H +  +I    +++   +  AGY  DT+ V+  +D +EK   +  HSE+ AIA
Sbjct:  389 RAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIA 551          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP371_ARATH (Pentatricopeptide repeat-containing protein At5g08510 OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.743e-27
Identity = 57/131 (43.51%), Postives = 81/131 (61.83%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSW-VEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEME 580
            GR GKLQEA  +I+ MP+ P   VWG LL  C  HGN E+A  A++ +F+L   +PG  V++SN YAA  +W+   + RK+++ + + K  G S+ VE G  VH F   D+ H R+ EIYQ LEE+   M+
Sbjct:  364 GRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYSYFVEVGVDVHKFTVEDKSHPRSYEIYQVLEEIFRRMK 494          

HSP 2 Score: 28.8758 bits (63), Expect = 1.743e-27
Identity = 24/83 (28.92%), Postives = 32/83 (38.55%), Query Frame = 1
Query:   49 KCGVIEPAYRVFEEV-RVRNLGMWNAM-----------------------------------LIACAQHSHMNKVFDLFKEME 189
            KCG+I+ A R+FEE+   RNL  WN+M                                   L+AC     + K  +LFK ME
Sbjct:  262 KCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSME 344          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP232_ARATH (Putative pentatricopeptide repeat-containing protein At3g15130 OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.745e-27
Identity = 63/164 (38.41%), Postives = 93/164 (56.71%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEM-EKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAI 679
            GRAG+L+EA  +I+ MPI P   +W  LL+ CR+HG+ EL       +  +   +P   V++SN Y  AG W +   AR++   +G+KKE G+SWVE    VH F +G+  H  T  I + L+E    + E+ GYV      L  +D + K + +R HSE+LAI
Sbjct:  461 GRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIEREVHFFRSGEDSHPLTPVIQETLKEAERRLREELGYVYGLKHELHDIDDESKEENLRAHSEKLAI 624          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP267_ARATH (Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.115e-27
Identity = 60/165 (36.36%), Postives = 94/165 (56.97%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDG-DEKNQTIRYHSERLAIA 682
            GRA  L +A S+I+ M + P  ++W  LL  CR+HG+ EL       + EL     G  VLL N Y+  G+WE   + R +++++ +  + G S +E    VH F+  D  H R  EIY+ L E+ ++++ AGYV + +  L  ++  +EK   +RYHSE+LAIA
Sbjct:  366 GRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDYVLLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLKIAGYVAEITSELHNLESEEEKGYALRYHSEKLAIA 530          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PPR48_ARATH (Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.779e-26
Identity = 64/164 (39.02%), Postives = 94/164 (57.32%), Query Frame = 2
Query:  191 GRAGKLQEAISVI-EKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAI 679
            GRAG+L +A+ V+ E+M       +W +LL+ CRIH N E+    A ++FEL    P   VLLSN YA  G+WED  K R+ + +  ++K+ G SW+E   +V +FV G+R      EI      L  ++ K GY PDT  V   +  +EK + +R HSE+LA+
Sbjct:  745 GRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLAL 908          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP427_ARATH (Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.779e-26
Identity = 64/174 (36.78%), Postives = 100/174 (57.47%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRC----HVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            C  +  GR G L EAI+ I + P+  T ++W ALL  CR+  N EL    A++++ +G    G  V++ N Y + G+  +AA   + L  +G+      +WVE G++ H+F++GDR         R+IYQK++EL EE+ + GY  +   +L  VD  E+ +  RYHSE+LAIA
Sbjct:  467 CMIELLGRDGLLDEAIAFIRRAPLKTTVNMWAALLNACRMQENLELGRVVAEKLYGMGPEKLGNYVVMYNMYNSMGKTAEAAGVLETLESKGLSMMPACTWVEVGDQTHSFLSGDRFDSYNETVKRQIYQKVDELMEEISEYGYSEEEQHLLPDVDEKEEERVGRYHSEKLAIA 640          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP333_ARATH (Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.779e-26
Identity = 57/136 (41.91%), Postives = 79/136 (58.09%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVP 598
            GRAG+L EA   ++ MP  P   VWG LL  CR+H N ELA  A+ ++ +L   + G  VL+SNA+A A  WE   K R +++++ V+K  G SW+E   R H FV+GD  H  +  IY  L  L  E+   GY+P
Sbjct:  691 GRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSWIEINKRTHLFVSGDVNHPESSHIYSLLNSLLGELRLEGYIP 826          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP435_ARATH (Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.324e-26
Identity = 56/125 (44.80%), Postives = 80/125 (64.00%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEEL 565
            GR G+L+EA   IE +PI P   + G LL+ C+IHGN EL    A R+FE      G  VLLSN YA++G+W+++ + R+ +RD G++KE G S +E  N++H F+ GD  H     IYQ+L+EL
Sbjct:  403 GRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTIEVDNQIHEFLVGDIAHPHKEAIYQRLQEL 527          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP308_ARATH (Pentatricopeptide repeat-containing protein At4g14050, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 2.324e-26
Identity = 65/166 (39.16%), Postives = 95/166 (57.23%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADR-VFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEME-KAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            GR+G L EA ++I  MP  P E  W ALL+ C+  G  ++    AD  V    +  P   +LLSN YA+A  W   ++AR+ L +  V+K+ G S VE       F AG+  H    +I++ L++L EEM  + GYVPDTS++L  +D  EK + + +HSER A+A
Sbjct:  386 GRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVA 551          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP363_ARATH (Pentatricopeptide repeat-containing protein At5g03800 OS=Arabidopsis thaliana GN=EMB175 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.964e-26
Identity = 62/163 (38.04%), Postives = 92/163 (56.44%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAI 679
            G  G L+EA   I  MP+ P  SV  ALL  CRIH NT +A   A  +      +P   +L SN Y+A+G W  +   R+ +R++G +K    SW+   N++H+F A D  H + ++IY+ LE L  E  K GY P+T +VL++VD   K   + +HS +LA+
Sbjct:  671 GHWGLLEEAEDTINSMPVQPEVSVLRALLDSCRIHSNTSVAKRVAKLILSTKPETPSEYILKSNIYSASGFWHRSEMIREEMRERGYRKHPAKSWIIHENKIHSFHARDTSHPQEKDIYRGLEILIMECLKVGYEPNTEYVLQEVDEFMKKSFLFHHSAKLAV 833          
The following BLAST results are available for this feature:
BLAST of CF417607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
PP410_ARATH1.609e-2736.20Putative pentatricopeptide repeat-containing prote... [more]
PP371_ARATH1.743e-2743.51Pentatricopeptide repeat-containing protein At5g08... [more]
PP232_ARATH2.745e-2738.41Putative pentatricopeptide repeat-containing prote... [more]
PP267_ARATH6.115e-2736.36Pentatricopeptide repeat-containing protein At3g47... [more]
PPR48_ARATH1.779e-2639.02Pentatricopeptide repeat-containing protein At1g18... [more]
PP427_ARATH1.779e-2636.78Pentatricopeptide repeat-containing protein At5g50... [more]
PP333_ARATH1.779e-2641.91Pentatricopeptide repeat-containing protein At4g21... [more]
PP435_ARATH2.324e-2644.80Putative pentatricopeptide repeat-containing prote... [more]
PP308_ARATH2.324e-2639.16Pentatricopeptide repeat-containing protein At4g14... [more]
PP363_ARATH3.964e-2638.04Pentatricopeptide repeat-containing protein At5g03... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-537 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417607 ID=CF417607; Name=CF417607; organism=Citrus sinensis; type=EST; length=683bp
TTTGACTCATCAAGCTTTGTAGGCAGTTCTCTGATTTCATTGTATTCTAA
GTGCGGAGTAATTGAACCGGCTTATCGGGTTTTTGAGGAAGTGCGCGTTA
GGAATCTTGGAATGTGGAATGCAATGCTGATTGCCTGCGCCCAGCACTCG
CATATGAACAAAGTGTTTGATTTGTTCAAAGAAATGGAAAGGTCGAGCGG
GGAAATTGCAGGAAGCAATTTCAGTTATTGAGAAAATGCCCATTGCACCT
ACAGAATCTGTTTGGGGAGCCTTGTTGACAGGTTGCCGAATTCATGGAAA
CACTGAATTGGCAGCCTATGCTGCAGATAGGGTCTTTGAGTTGGGCATCG
TGAGCCCAGGCATGAATGTTTTGTTATCTAATGCTTATGCTGCTGCTGGA
AGGTGGGAAGATGCAGCCAAAGCTAGGAAGATGCTTAGGGACCAAGGGGT
AAAGAAGGAAACAGGTTTGAGTTGGGTCGAGGAGGGAAATAGAGTTCATA
CTTTTGTTGCAGGAGATAGGTGCCATGTAAGAACCAGAGAGATTTATCAG
AAGTTAGAAGAGTTAGGGGAAGAAATGGAGAAAGCTGGTTATGTTCCTGA
TACNAGTTTTGTGTTGAGAAAGGTTGATGGCGATGAGAAGAATCAAACAA
TTAGGTATCATAGTGAGAGACTGGCCATTGCTT
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