CF417607
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP410_ARATH (Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.609e-27 Identity = 59/163 (36.20%), Postives = 99/163 (60.74%), Query Frame = 2 Query: 194 RAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682 RAG+L++A+S+I++MP+ P +VW +LL R++ N EL A+ ++ EL + G VLLSN YA + W++ + R+ ++ +GV+K+ G S +E VH F GD+ H + +I +++ + AGY DT+ V+ +D +EK + HSE+ AIA Sbjct: 389 RAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIA 551
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP371_ARATH (Pentatricopeptide repeat-containing protein At5g08510 OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.743e-27 Identity = 57/131 (43.51%), Postives = 81/131 (61.83%), Query Frame = 2 Query: 191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSW-VEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEME 580 GR GKLQEA +I+ MP+ P VWG LL C HGN E+A A++ +F+L +PG V++SN YAA +W+ + RK+++ + + K G S+ VE G VH F D+ H R+ EIYQ LEE+ M+ Sbjct: 364 GRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYSYFVEVGVDVHKFTVEDKSHPRSYEIYQVLEEIFRRMK 494 HSP 2 Score: 28.8758 bits (63), Expect = 1.743e-27 Identity = 24/83 (28.92%), Postives = 32/83 (38.55%), Query Frame = 1 Query: 49 KCGVIEPAYRVFEEV-RVRNLGMWNAM-----------------------------------LIACAQHSHMNKVFDLFKEME 189 KCG+I+ A R+FEE+ RNL WN+M L+AC + K +LFK ME Sbjct: 262 KCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSME 344
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP232_ARATH (Putative pentatricopeptide repeat-containing protein At3g15130 OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.745e-27 Identity = 63/164 (38.41%), Postives = 93/164 (56.71%), Query Frame = 2 Query: 191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEM-EKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAI 679 GRAG+L+EA +I+ MPI P +W LL+ CR+HG+ EL + + +P V++SN Y AG W + AR++ +G+KKE G+SWVE VH F +G+ H T I + L+E + E+ GYV L +D + K + +R HSE+LAI Sbjct: 461 GRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIEREVHFFRSGEDSHPLTPVIQETLKEAERRLREELGYVYGLKHELHDIDDESKEENLRAHSEKLAI 624
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP267_ARATH (Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 6.115e-27 Identity = 60/165 (36.36%), Postives = 94/165 (56.97%), Query Frame = 2 Query: 191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDG-DEKNQTIRYHSERLAIA 682 GRA L +A S+I+ M + P ++W LL CR+HG+ EL + EL G VLL N Y+ G+WE + R +++++ + + G S +E VH F+ D H R EIY+ L E+ ++++ AGYV + + L ++ +EK +RYHSE+LAIA Sbjct: 366 GRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDYVLLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLKIAGYVAEITSELHNLESEEEKGYALRYHSEKLAIA 530
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PPR48_ARATH (Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2) HSP 1 Score: 119.398 bits (298), Expect = 1.779e-26 Identity = 64/164 (39.02%), Postives = 94/164 (57.32%), Query Frame = 2 Query: 191 GRAGKLQEAISVI-EKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAI 679 GRAG+L +A+ V+ E+M +W +LL+ CRIH N E+ A ++FEL P VLLSN YA G+WED K R+ + + ++K+ G SW+E +V +FV G+R EI L ++ K GY PDT V + +EK + +R HSE+LA+ Sbjct: 745 GRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLAL 908
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP427_ARATH (Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.779e-26 Identity = 64/174 (36.78%), Postives = 100/174 (57.47%), Query Frame = 2 Query: 173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRC----HVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682 C + GR G L EAI+ I + P+ T ++W ALL CR+ N EL A++++ +G G V++ N Y + G+ +AA + L +G+ +WVE G++ H+F++GDR R+IYQK++EL EE+ + GY + +L VD E+ + RYHSE+LAIA Sbjct: 467 CMIELLGRDGLLDEAIAFIRRAPLKTTVNMWAALLNACRMQENLELGRVVAEKLYGMGPEKLGNYVVMYNMYNSMGKTAEAAGVLETLESKGLSMMPACTWVEVGDQTHSFLSGDRFDSYNETVKRQIYQKVDELMEEISEYGYSEEEQHLLPDVDEKEEERVGRYHSEKLAIA 640
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP333_ARATH (Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.779e-26 Identity = 57/136 (41.91%), Postives = 79/136 (58.09%), Query Frame = 2 Query: 191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVP 598 GRAG+L EA ++ MP P VWG LL CR+H N ELA A+ ++ +L + G VL+SNA+A A WE K R +++++ V+K G SW+E R H FV+GD H + IY L L E+ GY+P Sbjct: 691 GRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSWIEINKRTHLFVSGDVNHPESSHIYSLLNSLLGELRLEGYIP 826
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP435_ARATH (Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.324e-26 Identity = 56/125 (44.80%), Postives = 80/125 (64.00%), Query Frame = 2 Query: 191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEEL 565 GR G+L+EA IE +PI P + G LL+ C+IHGN EL A R+FE G VLLSN YA++G+W+++ + R+ +RD G++KE G S +E N++H F+ GD H IYQ+L+EL Sbjct: 403 GRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTIEVDNQIHEFLVGDIAHPHKEAIYQRLQEL 527
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP308_ARATH (Pentatricopeptide repeat-containing protein At4g14050, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2 SV=3) HSP 1 Score: 119.013 bits (297), Expect = 2.324e-26 Identity = 65/166 (39.16%), Postives = 95/166 (57.23%), Query Frame = 2 Query: 191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADR-VFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEME-KAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682 GR+G L EA ++I MP P E W ALL+ C+ G ++ AD V + P +LLSN YA+A W ++AR+ L + V+K+ G S VE F AG+ H +I++ L++L EEM + GYVPDTS++L +D EK + + +HSER A+A Sbjct: 386 GRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVA 551
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP363_ARATH (Pentatricopeptide repeat-containing protein At5g03800 OS=Arabidopsis thaliana GN=EMB175 PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.964e-26 Identity = 62/163 (38.04%), Postives = 92/163 (56.44%), Query Frame = 2 Query: 191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAI 679 G G L+EA I MP+ P SV ALL CRIH NT +A A + +P +L SN Y+A+G W + R+ +R++G +K SW+ N++H+F A D H + ++IY+ LE L E K GY P+T +VL++VD K + +HS +LA+ Sbjct: 671 GHWGLLEEAEDTINSMPVQPEVSVLRALLDSCRIHSNTSVAKRVAKLILSTKPETPSEYILKSNIYSASGFWHRSEMIREEMRERGYRKHPAKSWIIHENKIHSFHARDTSHPQEKDIYRGLEILIMECLKVGYEPNTEYVLQEVDEFMKKSFLFHHSAKLAV 833 The following BLAST results are available for this feature:
BLAST of CF417607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 166
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417607 ID=CF417607; Name=CF417607; organism=Citrus sinensis; type=EST; length=683bpback to top |