CF417607

Overview
NameCF417607
Unique NameCF417607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP449_ARATH (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.761e-26
Identity = 62/164 (37.80%), Postives = 91/164 (55.49%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPD-TSFVLRKVDGDEKNQTIRYHSERLAI 679
            GRAG L EA   I++MP+ P   +WGALL  CRIH N EL     + +  +     G  V  +N +A   +W+ AA+ R+++++QGV K  G S +      H F+AGDR H    +I  K   +  ++E+ GYVP+    +L  VD DE+   +  HSE+LAI
Sbjct:  395 GRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAI 558          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP425_ARATH (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.761e-26
Identity = 58/170 (34.12%), Postives = 95/170 (55.88%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            C     GR+G L EA   I  MPI P + +W ALL  CR+ GN E+    A+ + ++     G  V LSN YA+ G W + ++ R  ++++ ++K+ G S ++    +H FV  D  H + +EI   L E+ +++  AGY P T+ VL  ++ ++K   + YHSE++A A
Sbjct:  416 CMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATA 585          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP151_ARATH (Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.831e-26
Identity = 56/135 (41.48%), Postives = 81/135 (60.00%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEM 577
            C     GRAG L+EA S+IE+MP+ P   +WG+LL  C++H N  L  Y A+++ E+   + G  VLLSN YA  G+WED    RK +R +GV K+ G SW++     H F+  D+ H R ++I+  L+ L  EM
Sbjct:  534 CMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEM 668          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PPR83_ARATH (Putative pentatricopeptide repeat-containing protein At1g56570 OS=Arabidopsis thaliana GN=PCMP-E64 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.967e-25
Identity = 61/138 (44.20%), Postives = 82/138 (59.42%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAA-YAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPD 601
            GRAGK+ EA  ++E+MP  P ES WGA+L  C+ H +  L +  AA +V EL     G  V+LS  YAA G+W D A+ RKM+R  G KKE G+SW+   N+V +F   D+       +Y  L  L EE  +AGYVP+
Sbjct:  462 GRAGKIGEAYELVERMPFKPDESTWGAILGACKAHKHNGLISRLAARKVMELKPKMVGTYVMLSYIYAAEGKWVDFARVRKMMRMMGNKKEAGMSWILVENQVFSFAVSDKMCPNASSVYSVLGLLIEETREAGYVPE 599          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP297_ARATH (Pentatricopeptide repeat-containing protein At4g01030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.383e-25
Identity = 59/169 (34.91%), Postives = 95/169 (56.21%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAI 679
            C     GR+G L EA   I+ M + P  ++WGA L+ C+IH + ELA  A  R+  L   +    +++ N Y+   RWED  + R ++R+  V+ +   SW++    VH F A  + H    +IY +L +L  EM+K+GYVPDTS + + +   EK + +  H+E+LA+
Sbjct:  538 CMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPHNSANYMMMINLYSNLNRWEDVERIRNLMRNNRVRVQDLWSWIQIDQTVHIFYAEGKTHPDEGDIYFELYKLVSEMKKSGYVPDTSCIHQDISDSEKEKLLMGHTEKLAM 706          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP182_ARATH (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25
Identity = 61/174 (35.06%), Postives = 97/174 (55.75%), Query Frame = 2
Query:  170 ICSKKWKGRAGKLQEAISVIEKMPI---APTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            +C     GRAG L EA   I ++     A   ++W A+L  C++H N +L    A R+  L   +PG +V+LSN YA +G+ ++ +  R  +    ++K+ G S +E  N+ + F  GD  H  T EIY+ LE L    ++ GY P +  V+ +V+ +EK   +RYHSE+LA+A
Sbjct:  350 VCMVDMLGRAGFLDEAYKFIHQLDATGKATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVA 523          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP191_ARATH (Pentatricopeptide repeat-containing protein At2g37310 OS=Arabidopsis thaliana GN=PCMP-E49 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.476e-25
Identity = 56/141 (39.72%), Postives = 82/141 (58.16%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYV 595
            C      RAGKL +A+  I KMPI P   VWGALL G  + G+ E+A +A DR+FE+   + G   +++N Y  AGRWE+A   R  ++  G+KK  G SW+E    + +F+A D    R++E+Y+ +E L E M    Y+
Sbjct:  508 CMVSVLSRAGKLSDAMEFISKMPIDPIAKVWGALLNGASVLGDLEIARFACDRLFEMEPENTGNYTIMANLYTQAGRWEEAEMVRNKMKRIGLKKIPGTSWIETEKGLRSFIAKDSSCERSKEMYEIIEGLVESMSDKEYI 648          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP446_ARATH (Pentatricopeptide repeat-containing protein At5g65570 OS=Arabidopsis thaliana GN=PCMP-H47 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.275e-24
Identity = 59/171 (34.50%), Postives = 96/171 (56.14%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDR-CHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            C     GRAG+L+EA  +  ++ I P   +W  LL+ C++H   E+A     ++ E+     G  +L+SN YA+ G+W    + +  ++D  +KK   +SWVE     HTF+AGD   H  + +I + LEEL ++ +  GYV D S V + ++   K +++  HSE+LAIA
Sbjct:  509 CMVDLLGRAGRLEEAEMLTTEV-INPDLVLWRTLLSACKVHRKVEMAERITRKILEIEPGDEGTLILMSNLYASTGKWNRVIEMKSKMKDMKLKKNPAMSWVEINKETHTFMAGDLFSHPNSEQILENLEELIKKSKDLGYVEDKSCVFQDMEETAKERSLHQHSEKLAIA 678          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP367_ARATH (Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.265e-24
Identity = 65/171 (38.01%), Postives = 95/171 (55.56%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAG-DRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            C     GRAGKL EA + I KM + P   + GALL  C+I+ NTE+A    + + ++     G  VLLSN YA AG+W+     R M++++ VKK  G S +E   +++ F  G D+ H    +I +K EE+  ++   GY  +T      VD +EK  +I  HSE+LAIA
Sbjct:  391 CIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIA 561          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP406_ARATH (Pentatricopeptide repeat-containing protein At5g39680 OS=Arabidopsis thaliana GN=EMB2744 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.079e-23
Identity = 56/163 (34.36%), Postives = 86/163 (52.76%), Query Frame = 2
Query:  194 RAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            +AG  ++A   +   PI      W  LL  C +  N  L    A+   E      G+ VLLSN +A +  WE  AK R ++ ++GVKKE G+SW+   N+ H F+A D  H     IY K++E+  +++  GY PD +     VD +++   + YHSE+LA+A
Sbjct:  487 KAGMFKDAEDFMRTAPIEWDVVAWRTLLNACYVRRNYRLGKKVAEYAIEKYPNDSGVYVLLSNIHAKSREWEGVAKVRSLMNNRGVKKEPGVSWIGIRNQTHVFLAEDNQHPEITLIYAKVKEVMSKIKPLGYSPDVAGAFHDVDEEQREDNLSYHSEKLAVA 649          
The following BLAST results are available for this feature:
BLAST of CF417607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
PP449_ARATH6.761e-2637.80Pentatricopeptide repeat-containing protein At5g66... [more]
PP425_ARATH6.761e-2634.12Pentatricopeptide repeat-containing protein At5g48... [more]
PP151_ARATH8.831e-2641.48Pentatricopeptide repeat-containing protein At2g13... [more]
PPR83_ARATH1.967e-2544.20Putative pentatricopeptide repeat-containing prote... [more]
PP297_ARATH4.383e-2534.91Pentatricopeptide repeat-containing protein At4g01... [more]
PP182_ARATH5.724e-2535.06Pentatricopeptide repeat-containing protein At2g33... [more]
PP191_ARATH7.476e-2539.72Pentatricopeptide repeat-containing protein At2g37... [more]
PP446_ARATH1.275e-2434.50Pentatricopeptide repeat-containing protein At5g65... [more]
PP367_ARATH8.265e-2438.01Pentatricopeptide repeat-containing protein At5g06... [more]
PP406_ARATH1.079e-2334.36Pentatricopeptide repeat-containing protein At5g39... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-537 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417607 ID=CF417607; Name=CF417607; organism=Citrus sinensis; type=EST; length=683bp
TTTGACTCATCAAGCTTTGTAGGCAGTTCTCTGATTTCATTGTATTCTAA
GTGCGGAGTAATTGAACCGGCTTATCGGGTTTTTGAGGAAGTGCGCGTTA
GGAATCTTGGAATGTGGAATGCAATGCTGATTGCCTGCGCCCAGCACTCG
CATATGAACAAAGTGTTTGATTTGTTCAAAGAAATGGAAAGGTCGAGCGG
GGAAATTGCAGGAAGCAATTTCAGTTATTGAGAAAATGCCCATTGCACCT
ACAGAATCTGTTTGGGGAGCCTTGTTGACAGGTTGCCGAATTCATGGAAA
CACTGAATTGGCAGCCTATGCTGCAGATAGGGTCTTTGAGTTGGGCATCG
TGAGCCCAGGCATGAATGTTTTGTTATCTAATGCTTATGCTGCTGCTGGA
AGGTGGGAAGATGCAGCCAAAGCTAGGAAGATGCTTAGGGACCAAGGGGT
AAAGAAGGAAACAGGTTTGAGTTGGGTCGAGGAGGGAAATAGAGTTCATA
CTTTTGTTGCAGGAGATAGGTGCCATGTAAGAACCAGAGAGATTTATCAG
AAGTTAGAAGAGTTAGGGGAAGAAATGGAGAAAGCTGGTTATGTTCCTGA
TACNAGTTTTGTGTTGAGAAAGGTTGATGGCGATGAGAAGAATCAAACAA
TTAGGTATCATAGTGAGAGACTGGCCATTGCTT
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