CF417607

Overview
NameCF417607
Unique NameCF417607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP169_ARATH (Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.079e-23
Identity = 56/132 (42.42%), Postives = 78/132 (59.09%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKA 586
            GRAG L+EA  ++E MP+    +VWGALL GCR+HGN EL   AA ++ EL     G+ VLL   Y  A  WEDA +AR+M+ ++GV+K  G S +E    V  F+  D+    + +IY +L  LG  M  +
Sbjct:  537 GRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEKIYDRLHCLGRHMRSS 668          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP378_ARATH (Pentatricopeptide repeat-containing protein At5g13270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H90 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.410e-23
Identity = 58/163 (35.58%), Postives = 90/163 (55.21%), Query Frame = 2
Query:  194 RAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            R+G L EA+  ++ MP  P    W   L+GC  H N EL   A + + +L        VL  N Y  AG+WE+AA+  K++ ++ +KKE   SW++E  ++H F+ GD+ H +T+EIY+KL+E    ME   +         + +  E+ + +  HSERLAIA
Sbjct:  536 RSGLLDEALKFMKNMPFEPDAMSWKCFLSGCWTHKNLELGEIAGEELRQLDPEDTAGYVLPFNLYTWAGKWEEAAEMMKLMNERMLKKELSCSWIQEKGKIHRFIVGDKHHPQTQEIYEKLKEFDGFMEGDMF---------QCNMTERREQLLDHSERLAIA 689          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP357_ARATH (Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.410e-23
Identity = 54/136 (39.71%), Postives = 79/136 (58.09%), Query Frame = 2
Query:  158 TKCLICSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEEL 565
            T+  +C     GRAG+L +A  +IEKMP  P   VW +LL+GC   GN ELA +AA+          G   +LSN YA+ G W +A K R+ ++ +GV KE G SW+     VH F++ D+ H +  +IY+ L++L
Sbjct:  691 TEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKVEGVVKEPGRSWIGINKEVHIFLSKDKSHCKANQIYEVLDDL 826          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP114_ARATH (Pentatricopeptide repeat-containing protein At1g71420 OS=Arabidopsis thaliana GN=PCMP-H70 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.410e-23
Identity = 62/165 (37.58%), Postives = 97/165 (58.79%), Query Frame = 2
Query:  194 RAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVL-LSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQ-TIRYHSERLAIA 682
            RA +  EA  VI++MP+ P   VW ALL  CR HGNT L   AAD++ EL   +  M+ + +SN Y A G + +A  + K +    V+KE  LSW E GN+VH F +G R       +Y++L+ L   +++ GYVP+     + ++ +E+ +  + +HSE+LA+A
Sbjct:  515 RAERFAEAEEVIKQMPMDPDAVVWIALLGSCRKHGNTRLGKLAADKLKELVEPTNSMSYIQMSNIYNAEGSFNEANLSIKEMETWRVRKEPDLSWTEIGNKVHEFASGGRHRPDKEAVYRELKRLISWLKEMGYVPEMRSASQDIEDEEQEEDNLLHHSEKLALA 679          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP116_ARATH (Pentatricopeptide repeat-containing protein At1g71490 OS=Arabidopsis thaliana GN=PCMP-E67 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 54/141 (38.30%), Postives = 79/141 (56.03%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEM-EKAGY 592
            C     GRAG L +A  +I  MP  P+ + W  LL  C IHGNT++  +AA+++ E+   +PG  VL++N YAAAG W   A+ R ++RD GVKK+ G +W++  +    F  GD         Y  L+ L + M + AGY
Sbjct:  524 CMVDLYGRAGFLAKAKDIIHNMPYKPSGATWATLLNACHIHGNTQIGKWAAEKLLEMKPENPGYYVLIANMYAAAGSWSKLAEVRTIMRDLGVKKDPGCAWIDTDSGFSLFSVGDTSSPEACNTYPLLDGLNQLMKDNAGY 664          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PPR85_ARATH (Pentatricopeptide repeat-containing protein At1g59720, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 6.997e-23
Identity = 62/173 (35.84%), Postives = 93/173 (53.76%), Query Frame = 2
Query:  194 RAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHG-NTELAAYAADRVFELGIVSPGMN-------VLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSF--VLRKVDGDEKNQTIRYHSERLAIA 682
            RAG + EAI ++  MP+ P   +W +LL  C   G + EL+   A  +      +   N       VLLS  YA+A RW D    RK++ + G++KE G S +E     H F AGD  H +T++IYQ+L+ + + +   GY+PD S   ++   +   K  ++R HSERLAIA
Sbjct:  405 RAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIA 577          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP261_ARATH (Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.036e-22
Identity = 53/127 (41.73%), Postives = 74/127 (58.27%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGE 571
            GR G+L+EAI V++ MP+ P   +WGALL  CR+H   ++A    D + +L    PG   LLSN YAAA  WE  A  R  ++  GV+K +G S VE  + +H F   D+ H ++ +IYQ L  L E
Sbjct:  463 GRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDGIHEFTVFDKSHPKSDQIYQMLGSLIE 589          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP315_ARATH (Pentatricopeptide repeat-containing protein At4g16470 OS=Arabidopsis thaliana GN=PCMP-E12 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.659e-22
Identity = 55/137 (40.15%), Postives = 76/137 (55.47%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPD 601
            GRAG+LQEA   + K P      VWG+LL  CRIHGN +L   AA +  EL   + G  V+ +N YA+ G  E A+K R+ + + GVKK+ G S +E    VH F+  D  H  + +IY+K+ E+        Y PD
Sbjct:  357 GRAGRLQEAYEFVMKSPCKEHPPVWGSLLGACRIHGNVKLLELAATKFLELDPTNGGNYVVFANGYASCGLREAASKVRRKMENAGVKKDPGYSQIELQGEVHRFMKDDTSHRLSEKIYKKVHEMTSFFMDIDYYPD 493          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP350_ARATH (Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.473e-22
Identity = 57/163 (34.97%), Postives = 90/163 (55.21%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEM-EKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLA 676
            GR G    A   +E+MP  PT  +WG+LL   R H +  +A +AA+++F++   + G  VLL N YA AGRWED  + + ++  +G+ + +  S VE   + H F  GDR HV T +IY+ L+ +   + E+  YV   S +  +     ++ + R HS RLA
Sbjct:  579 GRTGNFSAAKRFLEEMPFVPTARIWGSLLNASRNHKDITIAEFAAEQIFKMEHDNTGCYVLLLNMYAEAGRWEDVNRIKLLMESKGISRTSSRSTVEAKGKSHVFTNGDRSHVATNKIYEVLDVVSRMVGEEDIYVHCVSRLRPETLVKSRSNSPRRHSVRLA 741          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PPR13_ARATH (Pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.535e-22
Identity = 54/138 (39.13%), Postives = 83/138 (60.14%), Query Frame = 2
Query:  194 RAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNT-ELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDT 604
            RAG+L++A+ +++ MP+ P E V G+LL  C  HGN   LA      + +L + S    V+LSN YAA G+WE A+K R+ ++  G+KK+ G S +E  + +H F+AGD  HV T  I + LE +  ++   G V +T
Sbjct:  355 RAGRLEDALKLVQSMPMKPNEVVIGSLLAACSNHGNNIVLAERLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEIDDCMHVFMAGDNAHVETTYIREVLELISSDLRLQGCVVET 492          
The following BLAST results are available for this feature:
BLAST of CF417607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
PP169_ARATH1.079e-2342.42Pentatricopeptide repeat-containing protein At2g22... [more]
PP378_ARATH1.410e-2335.58Pentatricopeptide repeat-containing protein At5g13... [more]
PP357_ARATH1.410e-2339.71Pentatricopeptide repeat-containing protein At4g39... [more]
PP114_ARATH1.410e-2337.58Pentatricopeptide repeat-containing protein At1g71... [more]
PP116_ARATH2.405e-2338.30Pentatricopeptide repeat-containing protein At1g71... [more]
PPR85_ARATH6.997e-2335.84Pentatricopeptide repeat-containing protein At1g59... [more]
PP261_ARATH2.036e-2241.73Pentatricopeptide repeat-containing protein At3g29... [more]
PP315_ARATH2.659e-2240.15Pentatricopeptide repeat-containing protein At4g16... [more]
PP350_ARATH3.473e-2234.97Pentatricopeptide repeat-containing protein At4g35... [more]
PPR13_ARATH4.535e-2239.13Pentatricopeptide repeat-containing protein At1g05... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-537 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417607 ID=CF417607; Name=CF417607; organism=Citrus sinensis; type=EST; length=683bp
TTTGACTCATCAAGCTTTGTAGGCAGTTCTCTGATTTCATTGTATTCTAA
GTGCGGAGTAATTGAACCGGCTTATCGGGTTTTTGAGGAAGTGCGCGTTA
GGAATCTTGGAATGTGGAATGCAATGCTGATTGCCTGCGCCCAGCACTCG
CATATGAACAAAGTGTTTGATTTGTTCAAAGAAATGGAAAGGTCGAGCGG
GGAAATTGCAGGAAGCAATTTCAGTTATTGAGAAAATGCCCATTGCACCT
ACAGAATCTGTTTGGGGAGCCTTGTTGACAGGTTGCCGAATTCATGGAAA
CACTGAATTGGCAGCCTATGCTGCAGATAGGGTCTTTGAGTTGGGCATCG
TGAGCCCAGGCATGAATGTTTTGTTATCTAATGCTTATGCTGCTGCTGGA
AGGTGGGAAGATGCAGCCAAAGCTAGGAAGATGCTTAGGGACCAAGGGGT
AAAGAAGGAAACAGGTTTGAGTTGGGTCGAGGAGGGAAATAGAGTTCATA
CTTTTGTTGCAGGAGATAGGTGCCATGTAAGAACCAGAGAGATTTATCAG
AAGTTAGAAGAGTTAGGGGAAGAAATGGAGAAAGCTGGTTATGTTCCTGA
TACNAGTTTTGTGTTGAGAAAGGTTGATGGCGATGAGAAGAATCAAACAA
TTAGGTATCATAGTGAGAGACTGGCCATTGCTT
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