CF417607
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP169_ARATH (Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.079e-23 Identity = 56/132 (42.42%), Postives = 78/132 (59.09%), Query Frame = 2 Query: 191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKA 586 GRAG L+EA ++E MP+ +VWGALL GCR+HGN EL AA ++ EL G+ VLL Y A WEDA +AR+M+ ++GV+K G S +E V F+ D+ + +IY +L LG M + Sbjct: 537 GRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEKIYDRLHCLGRHMRSS 668
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP378_ARATH (Pentatricopeptide repeat-containing protein At5g13270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H90 PE=2 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.410e-23 Identity = 58/163 (35.58%), Postives = 90/163 (55.21%), Query Frame = 2 Query: 194 RAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682 R+G L EA+ ++ MP P W L+GC H N EL A + + +L VL N Y AG+WE+AA+ K++ ++ +KKE SW++E ++H F+ GD+ H +T+EIY+KL+E ME + + + E+ + + HSERLAIA Sbjct: 536 RSGLLDEALKFMKNMPFEPDAMSWKCFLSGCWTHKNLELGEIAGEELRQLDPEDTAGYVLPFNLYTWAGKWEEAAEMMKLMNERMLKKELSCSWIQEKGKIHRFIVGDKHHPQTQEIYEKLKEFDGFMEGDMF---------QCNMTERREQLLDHSERLAIA 689
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP357_ARATH (Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.410e-23 Identity = 54/136 (39.71%), Postives = 79/136 (58.09%), Query Frame = 2 Query: 158 TKCLICSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEEL 565 T+ +C GRAG+L +A +IEKMP P VW +LL+GC GN ELA +AA+ G +LSN YA+ G W +A K R+ ++ +GV KE G SW+ VH F++ D+ H + +IY+ L++L Sbjct: 691 TEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKVEGVVKEPGRSWIGINKEVHIFLSKDKSHCKANQIYEVLDDL 826
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP114_ARATH (Pentatricopeptide repeat-containing protein At1g71420 OS=Arabidopsis thaliana GN=PCMP-H70 PE=2 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.410e-23 Identity = 62/165 (37.58%), Postives = 97/165 (58.79%), Query Frame = 2 Query: 194 RAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVL-LSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQ-TIRYHSERLAIA 682 RA + EA VI++MP+ P VW ALL CR HGNT L AAD++ EL + M+ + +SN Y A G + +A + K + V+KE LSW E GN+VH F +G R +Y++L+ L +++ GYVP+ + ++ +E+ + + +HSE+LA+A Sbjct: 515 RAERFAEAEEVIKQMPMDPDAVVWIALLGSCRKHGNTRLGKLAADKLKELVEPTNSMSYIQMSNIYNAEGSFNEANLSIKEMETWRVRKEPDLSWTEIGNKVHEFASGGRHRPDKEAVYRELKRLISWLKEMGYVPEMRSASQDIEDEEQEEDNLLHHSEKLALA 679
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP116_ARATH (Pentatricopeptide repeat-containing protein At1g71490 OS=Arabidopsis thaliana GN=PCMP-E67 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23 Identity = 54/141 (38.30%), Postives = 79/141 (56.03%), Query Frame = 2 Query: 173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEM-EKAGY 592 C GRAG L +A +I MP P+ + W LL C IHGNT++ +AA+++ E+ +PG VL++N YAAAG W A+ R ++RD GVKK+ G +W++ + F GD Y L+ L + M + AGY Sbjct: 524 CMVDLYGRAGFLAKAKDIIHNMPYKPSGATWATLLNACHIHGNTQIGKWAAEKLLEMKPENPGYYVLIANMYAAAGSWSKLAEVRTIMRDLGVKKDPGCAWIDTDSGFSLFSVGDTSSPEACNTYPLLDGLNQLMKDNAGY 664
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PPR85_ARATH (Pentatricopeptide repeat-containing protein At1g59720, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2 SV=2) HSP 1 Score: 107.457 bits (267), Expect = 6.997e-23 Identity = 62/173 (35.84%), Postives = 93/173 (53.76%), Query Frame = 2 Query: 194 RAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHG-NTELAAYAADRVFELGIVSPGMN-------VLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSF--VLRKVDGDEKNQTIRYHSERLAIA 682 RAG + EAI ++ MP+ P +W +LL C G + EL+ A + + N VLLS YA+A RW D RK++ + G++KE G S +E H F AGD H +T++IYQ+L+ + + + GY+PD S ++ + K ++R HSERLAIA Sbjct: 405 RAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIA 577
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP261_ARATH (Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.036e-22 Identity = 53/127 (41.73%), Postives = 74/127 (58.27%), Query Frame = 2 Query: 191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGE 571 GR G+L+EAI V++ MP+ P +WGALL CR+H ++A D + +L PG LLSN YAAA WE A R ++ GV+K +G S VE + +H F D+ H ++ +IYQ L L E Sbjct: 463 GRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDGIHEFTVFDKSHPKSDQIYQMLGSLIE 589
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP315_ARATH (Pentatricopeptide repeat-containing protein At4g16470 OS=Arabidopsis thaliana GN=PCMP-E12 PE=2 SV=2) HSP 1 Score: 105.531 bits (262), Expect = 2.659e-22 Identity = 55/137 (40.15%), Postives = 76/137 (55.47%), Query Frame = 2 Query: 191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPD 601 GRAG+LQEA + K P VWG+LL CRIHGN +L AA + EL + G V+ +N YA+ G E A+K R+ + + GVKK+ G S +E VH F+ D H + +IY+K+ E+ Y PD Sbjct: 357 GRAGRLQEAYEFVMKSPCKEHPPVWGSLLGACRIHGNVKLLELAATKFLELDPTNGGNYVVFANGYASCGLREAASKVRRKMENAGVKKDPGYSQIELQGEVHRFMKDDTSHRLSEKIYKKVHEMTSFFMDIDYYPD 493
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP350_ARATH (Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=2 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.473e-22 Identity = 57/163 (34.97%), Postives = 90/163 (55.21%), Query Frame = 2 Query: 191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEM-EKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLA 676 GR G A +E+MP PT +WG+LL R H + +A +AA+++F++ + G VLL N YA AGRWED + + ++ +G+ + + S VE + H F GDR HV T +IY+ L+ + + E+ YV S + + ++ + R HS RLA Sbjct: 579 GRTGNFSAAKRFLEEMPFVPTARIWGSLLNASRNHKDITIAEFAAEQIFKMEHDNTGCYVLLLNMYAEAGRWEDVNRIKLLMESKGISRTSSRSTVEAKGKSHVFTNGDRSHVATNKIYEVLDVVSRMVGEEDIYVHCVSRLRPETLVKSRSNSPRRHSVRLA 741
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PPR13_ARATH (Pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 4.535e-22 Identity = 54/138 (39.13%), Postives = 83/138 (60.14%), Query Frame = 2 Query: 194 RAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNT-ELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDT 604 RAG+L++A+ +++ MP+ P E V G+LL C HGN LA + +L + S V+LSN YAA G+WE A+K R+ ++ G+KK+ G S +E + +H F+AGD HV T I + LE + ++ G V +T Sbjct: 355 RAGRLEDALKLVQSMPMKPNEVVIGSLLAACSNHGNNIVLAERLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEIDDCMHVFMAGDNAHVETTYIREVLELISSDLRLQGCVVET 492 The following BLAST results are available for this feature:
BLAST of CF417607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 166
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417607 ID=CF417607; Name=CF417607; organism=Citrus sinensis; type=EST; length=683bpback to top |