CF417607
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP220_ARATH (Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 4.535e-22 Identity = 59/144 (40.97%), Postives = 79/144 (54.86%), Query Frame = 2 Query: 173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYV-PD 601 C GR G LQEA IE + P +W +LL CRIHG+ +A+++ EL + VLLSN YA+ G WE A RK++RD+GVKK G SW++ R H F AGD+ H +I LE+L + M+ V PD Sbjct: 875 CMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKVMRDRGVKKVPGYSWIDVEQRTHIFAAGDKSHSEIGKIEMFLEDLYDLMKDDAVVNPD 1018
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PPR75_ARATH (Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 5.923e-22 Identity = 52/140 (37.14%), Postives = 83/140 (59.29%), Query Frame = 2 Query: 191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVA-GDRCHVRTREIYQKLEELGEEMEKAGYVPDTS 607 GR G L+EA ++IE+MP+ PT VWGAL C +H + EL YAA RV +L G LL+N Y+ + W++ A+ RK ++DQ V K G SW+E ++ F+A D+ + + ++Y+ L+ +G +M + D + Sbjct: 454 GRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVKGKLCEFIAFDDKKPLESDDLYKTLDTVGVQMRLPDELEDVT 593
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PPR70_ARATH (Pentatricopeptide repeat-containing protein At1g33350 OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.251e-21 Identity = 49/125 (39.20%), Postives = 72/125 (57.60%), Query Frame = 2 Query: 191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEEL 565 GRAG+ EA+ V+ M + E++WG+LL C+IHG+ +LA A + L + G +++N Y G WE+A +ARKM++ Q K G S +E N VH F + D+ H T EIY L+ L Sbjct: 411 GRAGRFDEALEVMSTMKMKADEAIWGSLLNACKIHGHLDLAEVAVKNLVALNPNNGGYVAMMANLYGEMGNWEEARRARKMIKHQNAYKPPGWSRIEIDNEVHQFYSLDKSHPETEEIYMILDSL 535
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP205_ARATH (Putative pentatricopeptide repeat-containing protein At3g01580 OS=Arabidopsis thaliana GN=PCMP-E87 PE=3 SV=2) HSP 1 Score: 102.064 bits (253), Expect = 2.940e-21 Identity = 51/131 (38.93%), Postives = 72/131 (54.96%), Query Frame = 2 Query: 191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEK 583 GR G L AI + ++MP +PT + G LL CRIH N E+A A ++FEL G +L+SN Y G WE+ K R ++ +G+KK S +E +VH FVA D H +Y L+EL M++ Sbjct: 515 GRVGDLDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAETVAKKLFELESNHAGYYMLMSNVYGVKGEWENVEKLRNSVKQRGIKKGLAESLIEIRRKVHRFVADDELHPEKEPVYGLLKELDLHMKE 645
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP192_ARATH (Pentatricopeptide repeat-containing protein At2g37320 OS=Arabidopsis thaliana GN=PCMP-E50 PE=2 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.940e-21 Identity = 53/130 (40.77%), Postives = 74/130 (56.92%), Query Frame = 2 Query: 191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEME 580 GR G LQEA+ +IE MP+ P +WG+LL CR+HG+ AA+ L +V L+N YA+ G W++AA RK+++D+G+K G SW+E N V F A D + R EI L L + ME Sbjct: 369 GRFGLLQEALELIENMPMKPNSVIWGSLLFSCRVHGDVWTGIRAAEERLMLEPDCAATHVQLANLYASVGYWKEAATVRKLMKDKGLKTNPGCSWIEINNYVFMFKAEDGSNCRMLEIVHVLHCLIDHME 498
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP165_ARATH (Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.839e-21 Identity = 48/108 (44.44%), Postives = 69/108 (63.89%), Query Frame = 2 Query: 194 RAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGD 517 RAGKL+ A+ + + MP+ P +WG+LL+ CR GN ++A A D + EL G VLL+N YA G+WED ++ RKM+R++ +KK G S +E N V FV+GD Sbjct: 390 RAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVNNIVQEFVSGD 497
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP207_ARATH (Pentatricopeptide repeat-containing protein At3g02330 OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2) HSP 1 Score: 100.908 bits (250), Expect = 6.549e-21 Identity = 58/153 (37.91%), Postives = 86/153 (56.21%), Query Frame = 2 Query: 191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIH-GNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQ 646 G++GK++ A+ +I +MP + +W LL C IH N E+A A + L LLSN YA AG WE + R+ +R +KKE G SWVE + +H F+ GD+ H R EIY++L + EM+ D+SFV R V+ +E++Q Sbjct: 751 GKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEIYEELGLIYSEMKP---FDDSSFV-RGVEVEEEDQ 899
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP345_ARATH (Pentatricopeptide repeat-containing protein At4g32430, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20 Identity = 52/146 (35.62%), Postives = 82/146 (56.16%), Query Frame = 2 Query: 173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGN-----RVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYV 595 C GRAG+L+EA ++ ++P P ES+ ++L CR+HGN ++ A A+ E+ G V + N YA W+ AA+ RK +R + V KE G SW++ G+ + F +GD+ H ++ EIY+ +E +G EM G V Sbjct: 616 CMVDMLGRAGRLKEAEELMSEVPGGPGESMLQSMLGSCRLHGNVKMGAKVAELAMEMKPELSGSYVQMYNIYAEKEEWDKAAEIRKAMRKKNVSKEAGFSWIDVGDTEGSLTMQGFSSGDKSHPKSDEIYRMVEIIGLEMNLEGKV 761
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP167_ARATH (Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20 Identity = 53/133 (39.85%), Postives = 73/133 (54.89%), Query Frame = 2 Query: 191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVA--GDRCHVRTREIYQKLEELGEEMEK 583 GRAG +E + IE+MP P + +W A+L CRIHGN EL AAD + +L S +LLS+ YA G+WE K R +++ + V KE +SW+E +V F G H R EIY L L +E+ Sbjct: 460 GRAGCFKELMRKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAADELIKLDPESSAPYILLSSIYADHGKWELVEKLRGVMKKRRVNKEKAVSWIEIEKKVEAFTVSDGSHAHARKEEIYFILHNLAAVIEE 592
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP414_ARATH (Pentatricopeptide repeat-containing protein At5g42450, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E102 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.250e-20 Identity = 47/137 (34.31%), Postives = 79/137 (57.66%), Query Frame = 2 Query: 173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEK 583 C R+G+ +EA +I+ MP+ P W ALL GC+IH N LA AA ++ EL V+LSNAY+A W++ + R+ +++ G+K+ TG SW+E +++ FV D+ + E+Y+ L + + +E+ Sbjct: 374 CMVDMLSRSGRFKEAEELIKSMPLDPGIGFWKALLGGCQIHSNKRLAKLAASKILELDPRDVSSYVMLSNAYSAMENWQNVSLIRRKMKETGLKRFTGCSWIEVRDQIRVFVNADKNNELKDEVYRMLALVSQHLEE 510 The following BLAST results are available for this feature:
BLAST of CF417607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 166
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417607 ID=CF417607; Name=CF417607; organism=Citrus sinensis; type=EST; length=683bpback to top |