CF417607

Overview
NameCF417607
Unique NameCF417607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP220_ARATH (Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.535e-22
Identity = 59/144 (40.97%), Postives = 79/144 (54.86%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYV-PD 601
            C     GR G LQEA   IE   + P   +W +LL  CRIHG+      +A+++ EL   +    VLLSN YA+ G WE A   RK++RD+GVKK  G SW++   R H F AGD+ H    +I   LE+L + M+    V PD
Sbjct:  875 CMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKVMRDRGVKKVPGYSWIDVEQRTHIFAAGDKSHSEIGKIEMFLEDLYDLMKDDAVVNPD 1018          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PPR75_ARATH (Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.923e-22
Identity = 52/140 (37.14%), Postives = 83/140 (59.29%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVA-GDRCHVRTREIYQKLEELGEEMEKAGYVPDTS 607
            GR G L+EA ++IE+MP+ PT  VWGAL   C +H + EL  YAA RV +L     G   LL+N Y+ +  W++ A+ RK ++DQ V K  G SW+E   ++  F+A  D+  + + ++Y+ L+ +G +M     + D +
Sbjct:  454 GRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVKGKLCEFIAFDDKKPLESDDLYKTLDTVGVQMRLPDELEDVT 593          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PPR70_ARATH (Pentatricopeptide repeat-containing protein At1g33350 OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.251e-21
Identity = 49/125 (39.20%), Postives = 72/125 (57.60%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEEL 565
            GRAG+  EA+ V+  M +   E++WG+LL  C+IHG+ +LA  A   +  L   + G   +++N Y   G WE+A +ARKM++ Q   K  G S +E  N VH F + D+ H  T EIY  L+ L
Sbjct:  411 GRAGRFDEALEVMSTMKMKADEAIWGSLLNACKIHGHLDLAEVAVKNLVALNPNNGGYVAMMANLYGEMGNWEEARRARKMIKHQNAYKPPGWSRIEIDNEVHQFYSLDKSHPETEEIYMILDSL 535          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP205_ARATH (Putative pentatricopeptide repeat-containing protein At3g01580 OS=Arabidopsis thaliana GN=PCMP-E87 PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.940e-21
Identity = 51/131 (38.93%), Postives = 72/131 (54.96%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEK 583
            GR G L  AI + ++MP +PT  + G LL  CRIH N E+A   A ++FEL     G  +L+SN Y   G WE+  K R  ++ +G+KK    S +E   +VH FVA D  H     +Y  L+EL   M++
Sbjct:  515 GRVGDLDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAETVAKKLFELESNHAGYYMLMSNVYGVKGEWENVEKLRNSVKQRGIKKGLAESLIEIRRKVHRFVADDELHPEKEPVYGLLKELDLHMKE 645          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP192_ARATH (Pentatricopeptide repeat-containing protein At2g37320 OS=Arabidopsis thaliana GN=PCMP-E50 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.940e-21
Identity = 53/130 (40.77%), Postives = 74/130 (56.92%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEME 580
            GR G LQEA+ +IE MP+ P   +WG+LL  CR+HG+      AA+    L       +V L+N YA+ G W++AA  RK+++D+G+K   G SW+E  N V  F A D  + R  EI   L  L + ME
Sbjct:  369 GRFGLLQEALELIENMPMKPNSVIWGSLLFSCRVHGDVWTGIRAAEERLMLEPDCAATHVQLANLYASVGYWKEAATVRKLMKDKGLKTNPGCSWIEINNYVFMFKAEDGSNCRMLEIVHVLHCLIDHME 498          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP165_ARATH (Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.839e-21
Identity = 48/108 (44.44%), Postives = 69/108 (63.89%), Query Frame = 2
Query:  194 RAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGD 517
            RAGKL+ A+ + + MP+ P   +WG+LL+ CR  GN ++A  A D + EL     G  VLL+N YA  G+WED ++ RKM+R++ +KK  G S +E  N V  FV+GD
Sbjct:  390 RAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVNNIVQEFVSGD 497          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP207_ARATH (Pentatricopeptide repeat-containing protein At3g02330 OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.549e-21
Identity = 58/153 (37.91%), Postives = 86/153 (56.21%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIH-GNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQ 646
            G++GK++ A+ +I +MP    + +W  LL  C IH  N E+A  A   +  L         LLSN YA AG WE  +  R+ +R   +KKE G SWVE  + +H F+ GD+ H R  EIY++L  +  EM+      D+SFV R V+ +E++Q
Sbjct:  751 GKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEIYEELGLIYSEMKP---FDDSSFV-RGVEVEEEDQ 899          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP345_ARATH (Pentatricopeptide repeat-containing protein At4g32430, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20
Identity = 52/146 (35.62%), Postives = 82/146 (56.16%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGN-----RVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYV 595
            C     GRAG+L+EA  ++ ++P  P ES+  ++L  CR+HGN ++ A  A+   E+     G  V + N YA    W+ AA+ RK +R + V KE G SW++ G+      +  F +GD+ H ++ EIY+ +E +G EM   G V
Sbjct:  616 CMVDMLGRAGRLKEAEELMSEVPGGPGESMLQSMLGSCRLHGNVKMGAKVAELAMEMKPELSGSYVQMYNIYAEKEEWDKAAEIRKAMRKKNVSKEAGFSWIDVGDTEGSLTMQGFSSGDKSHPKSDEIYRMVEIIGLEMNLEGKV 761          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP167_ARATH (Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20
Identity = 53/133 (39.85%), Postives = 73/133 (54.89%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVA--GDRCHVRTREIYQKLEELGEEMEK 583
            GRAG  +E +  IE+MP  P + +W A+L  CRIHGN EL   AAD + +L   S    +LLS+ YA  G+WE   K R +++ + V KE  +SW+E   +V  F    G   H R  EIY  L  L   +E+
Sbjct:  460 GRAGCFKELMRKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAADELIKLDPESSAPYILLSSIYADHGKWELVEKLRGVMKKRRVNKEKAVSWIEIEKKVEAFTVSDGSHAHARKEEIYFILHNLAAVIEE 592          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP414_ARATH (Pentatricopeptide repeat-containing protein At5g42450, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E102 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.250e-20
Identity = 47/137 (34.31%), Postives = 79/137 (57.66%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEK 583
            C      R+G+ +EA  +I+ MP+ P    W ALL GC+IH N  LA  AA ++ EL        V+LSNAY+A   W++ +  R+ +++ G+K+ TG SW+E  +++  FV  D+ +    E+Y+ L  + + +E+
Sbjct:  374 CMVDMLSRSGRFKEAEELIKSMPLDPGIGFWKALLGGCQIHSNKRLAKLAASKILELDPRDVSSYVMLSNAYSAMENWQNVSLIRRKMKETGLKRFTGCSWIEVRDQIRVFVNADKNNELKDEVYRMLALVSQHLEE 510          
The following BLAST results are available for this feature:
BLAST of CF417607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
PP220_ARATH4.535e-2240.97Pentatricopeptide repeat-containing protein At3g09... [more]
PPR75_ARATH5.923e-2237.14Pentatricopeptide repeat-containing protein At1g50... [more]
PPR70_ARATH2.251e-2139.20Pentatricopeptide repeat-containing protein At1g33... [more]
PP205_ARATH2.940e-2138.93Putative pentatricopeptide repeat-containing prote... [more]
PP192_ARATH2.940e-2140.77Pentatricopeptide repeat-containing protein At2g37... [more]
PP165_ARATH3.839e-2144.44Pentatricopeptide repeat-containing protein At2g20... [more]
PP207_ARATH6.549e-2137.91Pentatricopeptide repeat-containing protein At3g02... [more]
PP345_ARATH2.489e-2035.62Pentatricopeptide repeat-containing protein At4g32... [more]
PP167_ARATH2.489e-2039.85Pentatricopeptide repeat-containing protein At2g21... [more]
PP414_ARATH3.250e-2034.31Pentatricopeptide repeat-containing protein At5g42... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-537 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417607 ID=CF417607; Name=CF417607; organism=Citrus sinensis; type=EST; length=683bp
TTTGACTCATCAAGCTTTGTAGGCAGTTCTCTGATTTCATTGTATTCTAA
GTGCGGAGTAATTGAACCGGCTTATCGGGTTTTTGAGGAAGTGCGCGTTA
GGAATCTTGGAATGTGGAATGCAATGCTGATTGCCTGCGCCCAGCACTCG
CATATGAACAAAGTGTTTGATTTGTTCAAAGAAATGGAAAGGTCGAGCGG
GGAAATTGCAGGAAGCAATTTCAGTTATTGAGAAAATGCCCATTGCACCT
ACAGAATCTGTTTGGGGAGCCTTGTTGACAGGTTGCCGAATTCATGGAAA
CACTGAATTGGCAGCCTATGCTGCAGATAGGGTCTTTGAGTTGGGCATCG
TGAGCCCAGGCATGAATGTTTTGTTATCTAATGCTTATGCTGCTGCTGGA
AGGTGGGAAGATGCAGCCAAAGCTAGGAAGATGCTTAGGGACCAAGGGGT
AAAGAAGGAAACAGGTTTGAGTTGGGTCGAGGAGGGAAATAGAGTTCATA
CTTTTGTTGCAGGAGATAGGTGCCATGTAAGAACCAGAGAGATTTATCAG
AAGTTAGAAGAGTTAGGGGAAGAAATGGAGAAAGCTGGTTATGTTCCTGA
TACNAGTTTTGTGTTGAGAAAGGTTGATGGCGATGAGAAGAATCAAACAA
TTAGGTATCATAGTGAGAGACTGGCCATTGCTT
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