CF417660

Overview
NameCF417660
Unique NameCF417660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417660 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 395.971 bits (1016), Expect = 9.109e-110
Identity = 195/217 (89.86%), Postives = 204/217 (94.01%), Query Frame = 3
Query:    3 VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGIXPRESPHLCPSLXSRGDNMIERSTNLDWYKGPTLLDALDNINEPK 653
            VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT+YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK+R++EIVKEVSSYLKKVG  P +   + P     GDNMI+RSTNLDWYKGPTLL+ALD I+EPK
Sbjct:   12 VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKSRFEEIVKEVSSYLKKVGYNPDKIAFI-PISGFEGDNMIDRSTNLDWYKGPTLLEALDQISEPK 227          
BLAST of CF417660 vs. ExPASy Swiss-Prot
Match: EF1A2_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare GN=BLT63 PE=1 SV=1)

HSP 1 Score: 395.586 bits (1015), Expect = 1.190e-109
Identity = 196/217 (90.32%), Postives = 202/217 (93.09%), Query Frame = 3
Query:    3 VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGIXPRESPHLCPSLXSRGDNMIERSTNLDWYKGPTLLDALDNINEPK 653
            VIGHVDSGKSTTTGHLIYKLGGIDKRVIE FEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT+Y CTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVK MICCCNKMDATTPKYSK+RYDEIVKEVSSYLKKVG  P + P + P     GDNMIERS+NLDWYKGPTLL+ALD INEPK
Sbjct:   12 VIGHVDSGKSTTTGHLIYKLGGIDKRVIESFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYSCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKHMICCCNKMDATTPKYSKSRYDEIVKEVSSYLKKVGYNPDKVPFV-PISGFEGDNMIERSSNLDWYKGPTLLEALDQINEPK 227          
BLAST of CF417660 vs. ExPASy Swiss-Prot
Match: EF1A1_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 395.201 bits (1014), Expect = 1.554e-109
Identity = 196/217 (90.32%), Postives = 203/217 (93.55%), Query Frame = 3
Query:    3 VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGIXPRESPHLCPSLXSRGDNMIERSTNLDWYKGPTLLDALDNINEPK 653
            VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT+Y CTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG F+AGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK+RYDEIVKEVSSYLKKVG  P + P + P     GDNMIERS+NLDWYKGPTLL+ALD INEPK
Sbjct:   12 VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYSCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGVFQAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKSRYDEIVKEVSSYLKKVGYNPDKVPFV-PISGFEGDNMIERSSNLDWYKGPTLLEALDQINEPK 227          
BLAST of CF417660 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 387.111 bits (993), Expect = 4.231e-107
Identity = 193/217 (88.94%), Postives = 201/217 (92.63%), Query Frame = 3
Query:    3 VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGIXPRESPHLCPSLXSRGDNMIERSTNLDWYKGPTLLDALDNINEPK 653
            VIGHVDSGKSTTT H+IYKLGGIDKRVIERFEKEA EMNKRSFKYAW+LDKLKAERERGITIDIAL KFETT+YY TV+DAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK RY+EIVKEVSSYLK+VG  P + P + P     GDNMIERSTNLDWYKGPTLLDALDNINEPK
Sbjct:   12 VIGHVDSGKSTTTVHVIYKLGGIDKRVIERFEKEADEMNKRSFKYAWLLDKLKAERERGITIDIALLKFETTKYYSTVMDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKGRYEEIVKEVSSYLKEVGYNPDKIPFV-PISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPK 227          
BLAST of CF417660 vs. ExPASy Swiss-Prot
Match: EF1A_DICDI (Elongation factor 1-alpha OS=Dictyostelium discoideum GN=eef1a1 PE=1 SV=2)

HSP 1 Score: 335.495 bits (859), Expect = 1.461e-91
Identity = 165/217 (76.04%), Postives = 187/217 (86.18%), Query Frame = 3
Query:    3 VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGIXPRESPHLCPSLXSRGDNMIERSTNLDWYKGPTLLDALDNINEPK 653
            VIGHVD+GKSTTTGHLIYK GGIDKRVIE++EKEA+EM K+SFKYAWV+DKLKAERERGITIDIALWKFET++YY T+IDAPGHRDFIKNMITGTSQADCAVL+I S TG FEAGI+K+GQTREHALLA+TLGVKQMI   NKMD  +  YS+ARYDEIVKEVSS++KK+G  P E     P     GDNM+ERS  ++WYKGPTLL+ALD I EPK
Sbjct:   12 VIGHVDAGKSTTTGHLIYKCGGIDKRVIEKYEKEASEMGKQSFKYAWVMDKLKAERERGITIDIALWKFETSKYYFTIIDAPGHRDFIKNMITGTSQADCAVLVIASPTGEFEAGIAKNGQTREHALLAYTLGVKQMIVAINKMDEKSTNYSQARYDEIVKEVSSFIKKIGYNP-EKVAFVPISGWNGDNMLERSDKMEWYKGPTLLEALDAIVEPK 227          
BLAST of CF417660 vs. ExPASy Swiss-Prot
Match: EF1A_EUGGR (Elongation factor 1-alpha OS=Euglena gracilis GN=TEF PE=2 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.047e-89
Identity = 167/217 (76.96%), Postives = 180/217 (82.95%), Query Frame = 3
Query:    3 VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGIXPRESPHLCPSLXSRGDNMIERSTNLDWYKGPTLLDALDNINEPK 653
            VIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA+EM K SFKYAWVLDKLKAERER ITIDIALWKFET +   T+IDAPGHRDFIKNMITGTSQAD AVL+IDSTTGGFEAGISKDGQTREHALLA+TLGVKQMI   NK D  T KYS+ARY+EI KEVS YLKKVG  P + P + P     GDNMIE S N+ WYKG TL+ ALDN+  PK
Sbjct:   12 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEASEMGKGSFKYAWVLDKLKAERERCITIDIALWKFETAKSVFTIIDAPGHRDFIKNMITGTSQADAAVLVIDSTTGGFEAGISKDGQTREHALLAYTLGVKQMIVATNKFDDKTVKYSQARYEEIKKEVSGYLKKVGYNPEKVPFI-PISGWNGDNMIEASENMGWYKGLTLIGALDNLEPPK 227          
BLAST of CF417660 vs. ExPASy Swiss-Prot
Match: EF1A_TETPY (Elongation factor 1-alpha OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 4.399e-88
Identity = 162/217 (74.65%), Postives = 178/217 (82.03%), Query Frame = 3
Query:    3 VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGIXPRESPHLCPSLXSRGDNMIERSTNLDWYKGPTLLDALDNINEPK 653
            VIGHVDSGKSTTTGHLIYK GGIDKRVIE+FEKE+AE  K SFKYAWVLDKLKAERERGITIDI+LWKFET +Y+ T+IDAPGHRDFIKNMITGTSQAD A+L+I S  G FEAGISKDGQTREHALLAFTLGVKQMI C NKMD  T  +S+ RY EI KE+S YLKKVG  P   P + P     GDNM+ERSTN  WYKGP L++ALD +  PK
Sbjct:   13 VIGHVDSGKSTTTGHLIYKCGGIDKRVIEKFEKESAEQGKGSFKYAWVLDKLKAERERGITIDISLWKFETAKYHFTIIDAPGHRDFIKNMITGTSQADVAILMIASPQGEFEAGISKDGQTREHALLAFTLGVKQMIVCLNKMDEKTVNFSEERYQEIKKELSDYLKKVGYKPDTIPFI-PISGFNGDNMLERSTNAPWYKGPILVEALDALEPPK 228          
BLAST of CF417660 vs. ExPASy Swiss-Prot
Match: EF1A_HYDAT (Elongation factor 1-alpha OS=Hydra attenuata PE=2 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 1.415e-86
Identity = 165/229 (72.05%), Postives = 183/229 (79.91%), Query Frame = 3
Query:    3 VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGIXPRESPHLCPSLXSRGDNMIERSTNLDWYK-------------GPTLLDALDNINEP 650
            VIGHVDSGKST+TGH+IYK GGIDKR IE+FEKEA EM K SFKYAWVLDKLKAERERGITIDIALWKFETT+Y  T+IDAPGHRDFIKNMITGTSQADCAVLI+ S+TG FEAGISK+GQTREHALLAFTLGVKQMI   NK+D T P YS+AR++EI KE+S+Y+KKVG  P+  P L P     GDNMIE S N+ WYK             G TLL+ALDNI  P
Sbjct:   13 VIGHVDSGKSTSTGHMIYKCGGIDKRQIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETTKYVVTIIDAPGHRDFIKNMITGTSQADCAVLIVASSTGEFEAGISKNGQTREHALLAFTLGVKQMIVAVNKIDNTEPPYSEARFNEIKKEISAYVKKVGYDPKTVPVL-PVSGWHGDNMIEPSPNMSWYKGWEVEYKDTGKHTGKTLLEALDNIPLP 240          
BLAST of CF417660 vs. ExPASy Swiss-Prot
Match: EF1A_TRYBB (Elongation factor 1-alpha OS=Trypanosoma brucei brucei GN=TEF1 PE=1 SV=3)

HSP 1 Score: 318.546 bits (815), Expect = 1.848e-86
Identity = 158/216 (73.15%), Postives = 176/216 (81.48%), Query Frame = 3
Query:    3 VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGIXPRESPHLCPSLXSRGDNMIERSTNLDWYKGPTLLDALDNINEP 650
            V+GHVD+GKST TGHLIYK GGIDKR IE+FEKEAA++ K SFKYAWVLDKLKAERERGITIDIALWKFE+ +   T+IDAPGHRDFIKNMITGTSQAD A+LII S  G FEAGISKDGQTREHALLAFTLGVKQM+ CCNKMD  T  Y + RYDEIVKEVS+Y+KKVG    E     P    +GDNMIE+S  + WYKGPTLL+ALD +  P
Sbjct:   12 VVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAADIGKASFKYAWVLDKLKAERERGITIDIALWKFESPKSVFTIIDAPGHRDFIKNMITGTSQADAAILIIASAQGEFEAGISKDGQTREHALLAFTLGVKQMVVCCNKMDDKTVNYGQERYDEIVKEVSAYIKKVGYNV-EKVRFVPISGWQGDNMIEKSEKMPWYKGPTLLEALDMLEPP 226          
BLAST of CF417660 vs. ExPASy Swiss-Prot
Match: EF1A2_RAT (Elongation factor 1-alpha 2 OS=Rattus norvegicus GN=Eef1a2 PE=2 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 4.118e-86
Identity = 162/228 (71.05%), Postives = 182/228 (79.82%), Query Frame = 3
Query:    3 VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGIXPRESPHLCPSLXSRGDNMIERSTNLDWYK------------GPTLLDALDNINEP 650
            VIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVLDKLKAERERGITIDI+LWKFETT+YY T+IDAPGHRDFIKNMITGTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RYDEIVKEVS+Y+KK+G  P   P + P     GDNM+E S N+ W+K            G +LL+ALD I  P
Sbjct:   12 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPAYSEKRYDEIVKEVSAYIKKIGYNPATVPFV-PISGWHGDNMLEPSPNMPWFKGWKVERKEGNASGVSLLEALDTILPP 238          
The following BLAST results are available for this feature:
BLAST of CF417660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A2_DAUCA9.109e-11089.86Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]
EF1A2_HORVU1.190e-10990.32Elongation factor 1-alpha OS=Hordeum vulgare GN=BL... [more]
EF1A1_HORVU1.554e-10990.32Elongation factor 1-alpha OS=Hordeum vulgare PE=1 ... [more]
EF1A_PEA4.231e-10788.94Elongation factor 1-alpha OS=Pisum sativum PE=2 SV... [more]
EF1A_DICDI1.461e-9176.04Elongation factor 1-alpha OS=Dictyostelium discoid... [more]
EF1A_EUGGR1.047e-8976.96Elongation factor 1-alpha OS=Euglena gracilis GN=T... [more]
EF1A_TETPY4.399e-8874.65Elongation factor 1-alpha OS=Tetrahymena pyriformi... [more]
EF1A_HYDAT1.415e-8672.05Elongation factor 1-alpha OS=Hydra attenuata PE=2 ... [more]
EF1A_TRYBB1.848e-8673.15Elongation factor 1-alpha OS=Trypanosoma brucei br... [more]
EF1A2_RAT4.118e-8671.05Elongation factor 1-alpha 2 OS=Rattus norvegicus G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-590 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417660 ID=CF417660; Name=CF417660; organism=Citrus sinensis; type=EST; length=653bp
TGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGACACTTG
ATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTTGAGAA
GGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGGTGCTCG
ACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTTG
TGGAAGTTCGAGACCACCAGGTACTACTGCACCGTCATTGATGCTCCTGG
ACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACAGGCTGACT
GTGCCGTCCTCATCATTGACTCCACCACCGGTGGTTTTGAAGCTGGTATC
TCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGG
TGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCCACCACCCCTA
AGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGGAAGTCTCTTCCTAC
CTGAAGAAGGTTGGGATACNACCCCGAGAAAGTCCCCATTTGTGCCCATC
TCTGGNTTCGAGGGGTGACAACATGATTGAGAGGTCTACCAACCTTGACT
GGTACAAGGGTCCAACCCTGCTGGATGCTCTTGACAATATCAATGAGCCG
AAA
back to top