CF417667

Overview
NameCF417667
Unique NameCF417667
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417667 vs. ExPASy Swiss-Prot
Match: PORA_WHEAT (Protochlorophyllide reductase A, chloroplastic OS=Triticum aestivum GN=PORA PE=3 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.194e-75
Identity = 136/159 (85.53%), Postives = 150/159 (94.34%), Query Frame = 1
Query:    1 ANLGDLRGFAGGLNGLNSSSMIDGGD-FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 474
            A+LGDLRG AGGL+G + S+MIDG + FDGAKAYKDSKVCNMLTMQEFHRR+HEETGI F+SLYPGCIATTGLFREHIPLFR LFPPFQK++TKG+VSE E+GKRLAQVV++PSLTKSGVYWSWNKDSASFENQLSQEASD EKARKVWE+SEKLVGLA
Sbjct:  230 ASLGDLRGLAGGLSGASGSAMIDGDESFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFSSLYPGCIATTGLFREHIPLFRTLFPPFQKFVTKGFVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 388          
BLAST of CF417667 vs. ExPASy Swiss-Prot
Match: PORA_HORVU (Protochlorophyllide reductase A, chloroplastic OS=Hordeum vulgare GN=PORA PE=1 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 5.925e-75
Identity = 135/159 (84.91%), Postives = 149/159 (93.71%), Query Frame = 1
Query:    1 ANLGDLRGFAGGLNGLNSSSMIDGGD-FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 474
            A+LGDLRG AGGL+G + S+MIDG + FDGAKAYKDSKVCNMLTMQEFHRR+HEETGI F+SLYPGCIATTGLFREHIPLFR LFPPFQK++TKG+VSE E+GKRLAQVV++P LTKSGVYWSWNKDSASFENQLSQEASD EKARKVWE+SEKLVGLA
Sbjct:  230 ASLGDLRGLAGGLSGASGSAMIDGDESFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFSSLYPGCIATTGLFREHIPLFRTLFPPFQKFVTKGFVSEAESGKRLAQVVAEPVLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 388          
BLAST of CF417667 vs. ExPASy Swiss-Prot
Match: POR_MARPA (Protochlorophyllide reductase, chloroplastic OS=Marchantia paleacea GN=PORA PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.459e-73
Identity = 128/157 (81.53%), Postives = 144/157 (91.72%), Query Frame = 1
Query:    1 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGL 471
            ANLG LRG AGGLNG+NSSSMIDGG+FDGAKAYKDSKVCNM TMQEFHRR+H ETGI F+SLYPGCIA TGLFR H+ LFR LFPPFQKYITKGYVSE+EAGKR+AQVVSDP L+KSGVYWSWNKDS SFEN+LS+EAS+ EKA+++WE+SE+L GL
Sbjct:  301 ANLGHLRGLAGGLNGVNSSSMIDGGEFDGAKAYKDSKVCNMFTMQEFHRRYHAETGITFSSLYPGCIAETGLFRNHVTLFRTLFPPFQKYITKGYVSEEEAGKRMAQVVSDPKLSKSGVYWSWNKDSGSFENELSEEASNPEKAKRLWELSERLSGL 457          
BLAST of CF417667 vs. ExPASy Swiss-Prot
Match: POR_CHLRE (Protochlorophyllide reductase, chloroplastic OS=Chlamydomonas reinhardtii GN=PORA PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.262e-58
Identity = 105/158 (66.46%), Postives = 129/158 (81.65%), Query Frame = 1
Query:    1 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 474
            ANLGDL G A G+   N   M+DG +F+GAKAYKDSKV  M+T+++ H+RFH+ TGI FASLYPGCIA TGLFREH+PLF+ LFPPFQKYITKGYVSE+EAG+RLA V+SDP L KSG YWSW+  + SF+NQ+S+E +D  KA K+W+IS KLVGL+
Sbjct:  241 ANLGDLSGLAAGVPAANP--MMDGQEFNGAKAYKDSKVACMMTVRQMHQRFHDATGITFASLYPGCIAETGLFREHVPLFKTLFPPFQKYITKGYVSEEEAGRRLAAVISDPKLNKSGAYWSWSSTTGSFDNQVSEEVADDSKASKLWDISAKLVGLS 396          
BLAST of CF417667 vs. ExPASy Swiss-Prot
Match: POR_PLEBO (Light-dependent protochlorophyllide reductase OS=Plectonema boryanum GN=por PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.141e-44
Identity = 87/162 (53.70%), Postives = 115/162 (70.99%), Query Frame = 1
Query:    1 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW----NKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 474
            A+LGDL G   G       +MIDG  F   KAYKDSK+CNM+T +E HRR+H+ TGI F +LYPGC+A T LFR  +P+F+ +FP FQK IT GYVS++ AG+R AQVV+DP   +SGV+WSW     +   SF  +LS++ +D  KA+++WE+SEKLVGLA
Sbjct:  163 ADLGDLSGLEAGFKA--PIAMIDGKPFKAGKAYKDSKLCNMITSRELHRRYHDSTGIVFNTLYPGCVADTPLFRNSLPVFQKVFPWFQKNITGGYVSQELAGERTAQVVADPEFKQSGVHWSWGNRQKEGRESFVQELSEKVTDDAKAKRMWELSEKLVGLA 322          
BLAST of CF417667 vs. ExPASy Swiss-Prot
Match: POR_SYNY3 (Light-dependent protochlorophyllide reductase OS=Synechocystis sp. (strain PCC 6803) GN=por PE=3 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 7.064e-44
Identity = 87/160 (54.37%), Postives = 114/160 (71.25%), Query Frame = 1
Query:    4 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW-NKDSA---SFENQLSQEASDVEKARKVWEISEKLVGL 471
            +LG+  GF  G       +MI+   F   KAYKDSK+CNMLT +E HRRFH+ETGI F SLYPGC+A T LFR H  LFR +FP FQK +TKGYVS++ AG+R+A VV+D     SGV+WSW N+  A   +F  +LS++ SD +KA+++W++SEKLVGL
Sbjct:  164 DLGNFEGFEAGFK--KPIAMINNKKFKSGKAYKDSKLCNMLTTRELHRRFHQETGIVFNSLYPGCVADTPLFRNHYSLFRTIFPWFQKNVTKGYVSQELAGERVAMVVADDKFKDSGVHWSWGNRQQAGREAFVQELSEQGSDAQKAQRMWDLSEKLVGL 321          
The following BLAST results are available for this feature:
BLAST of CF417667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PORA_WHEAT1.194e-7585.53Protochlorophyllide reductase A, chloroplastic OS=... [more]
PORA_HORVU5.925e-7584.91Protochlorophyllide reductase A, chloroplastic OS=... [more]
POR_MARPA1.459e-7381.53Protochlorophyllide reductase, chloroplastic OS=Ma... [more]
POR_CHLRE2.262e-5866.46Protochlorophyllide reductase, chloroplastic OS=Ch... [more]
POR_PLEBO4.141e-4453.70Light-dependent protochlorophyllide reductase OS=P... [more]
POR_SYNY37.064e-4454.38Light-dependent protochlorophyllide reductase OS=S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-597 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417667 ID=CF417667; Name=CF417667; organism=Citrus sinensis; type=EST; length=675bp
GCCAACCTTGGGGACTTAAGGGGATTTGCTGGAGGCTTAAATGGGCTAAA
CAGCTCATCCATGATTGACGGTGGAGATTTTGACGGTGCCAAGGCCTACA
AGGACAGCAAAGTCTGCAACATGCTTACCATGCAAGAGTTTCACAGGCGG
TTCCACGAGGAAACTGGCATCGCATTCGCTTCCCTTTACCCTGGCTGCAT
TGCCACAACAGGCTTGTTCAGGGAGCACATTCCCTTGTTCAGACTTCTCT
TCCCCCCATTCCAAAAGTACATCACCAAGGGTTATGTCTCTGAAGATGAA
GCTGGAAAAAGACTTGCTCAGGTTGTGAGCGATCCAAGCTTGACAAAATC
AGGTGTTTACTGGAGCTGGAACAAGGACTCAGCTTCATTTGAGAATCAGT
TGTCTCAGGAAGCTAGTGACGTTGAGAAGGCACGTAAAGTCTGGGAGATA
AGTGAGAAACTTGTTGGTTTGGCCTAATTCAAAACCTGGAGATTCAGATC
TACCAGTTTATGTTATGGGAGGGTTTTATGAGCTTGAAGGTTTGTTAGGT
AGCGGAGGGTTTTATGAGCTTGAAGGTTTGTTAGGTAGCGGAGTTTGGAA
TTGTGGTCAGCTTTTCNATTGTAGATGTAGATGGCTTGTGGAAAAAAAAT
GTCAATAAATCACTCACTCCTGTTG
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