CF417675

Overview
NameCF417675
Unique NameCF417675
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length562
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417675 vs. ExPASy Swiss-Prot
Match: AQP1_PIG (Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 2.717e-18
Identity = 51/97 (52.58%), Postives = 63/97 (64.95%), Query Frame = 1
Query:    4 EIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 294
            EIIGT  LV  V + TD +R  RD  +   APL IGF+V + HL  I  TG GINPARSFG+AVI +N   + DHW+FWVGPF+G   A   + +IL
Sbjct:  144 EIIGTLQLVLCVLATTDRRR--RD--LGGSAPLAIGFSVALGHLLAIDYTGCGINPARSFGSAVITHN---FQDHWVFWVGPFIGGALAVLIYDFIL 233          
BLAST of CF417675 vs. ExPASy Swiss-Prot
Match: AQP1_SHEEP (Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 3.549e-18
Identity = 51/97 (52.58%), Postives = 63/97 (64.95%), Query Frame = 1
Query:    4 EIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 294
            EIIGT  LV  V + TD +R  RD  +    PL IGF+V + HL  I  TG GINPARSFG++VI +N   + DHWIFWVGPF+GA  A   + +IL
Sbjct:  144 EIIGTLQLVLCVLATTD-RRRRRD--LGDSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHN---FQDHWIFWVGPFIGAALAVLIYDFIL 234          
BLAST of CF417675 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.635e-18
Identity = 46/96 (47.92%), Postives = 63/96 (65.62%), Query Frame = 1
Query:    4 EIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 291
            E+I TF LV+T+F++ D KR+     V     L IGF+V + HL  I  TG  +NPARSFG AVI  N   W++HWI+WVGP +GA+ A A ++Y+
Sbjct:  163 ELIITFQLVFTIFASCDSKRTDVTGSVA----LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYV 251          
BLAST of CF417675 vs. ExPASy Swiss-Prot
Match: AQP1_BOVIN (Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 4.635e-18
Identity = 51/97 (52.58%), Postives = 63/97 (64.95%), Query Frame = 1
Query:    4 EIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 294
            EIIGT  LV  V + TD +R  RD  +    PL IGF+V + HL  I  TG GINPARSFG++VI +N   + DHWIFWVGPF+GA  A   + +IL
Sbjct:  144 EIIGTLQLVLCVLATTDRRR--RD--LGGSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHN---FQDHWIFWVGPFIGAALAVLIYDFIL 233          
BLAST of CF417675 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.053e-18
Identity = 45/96 (46.88%), Postives = 63/96 (65.62%), Query Frame = 1
Query:    4 EIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 291
            E+I TF LV+T+F++ D KR+     +     L IGF+V + HL  I  TG  +NPARSFG AVI  N   W++HWI+WVGP +GA+ A A ++Y+
Sbjct:  166 ELIITFQLVFTIFASCDSKRTDVTGSIA----LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYV 254          
BLAST of CF417675 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.761e-17
Identity = 44/96 (45.83%), Postives = 62/96 (64.58%), Query Frame = 1
Query:    4 EIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 291
            E+I TF LV+T+F++ D KR+     +     L IGF+V + HL  I  TG  +NPARSFG AVI  N   W++HWI+WVGP +GA+ A   ++Y+
Sbjct:  163 ELIITFQLVFTIFASCDSKRTDVTGSIA----LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGGLYEYV 251          
BLAST of CF417675 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.761e-17
Identity = 44/96 (45.83%), Postives = 62/96 (64.58%), Query Frame = 1
Query:    4 EIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 291
            E+I TF LV+T+F++ D KR+     +     L IGF+V + HL  I  TG  +NPARSFG AVI  N   W++HWI+WVGP +GA+ A   ++Y+
Sbjct:  163 ELIITFQLVFTIFASCDSKRTDVTGSIA----LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGGLYEYV 251          
BLAST of CF417675 vs. ExPASy Swiss-Prot
Match: AQP4_MOUSE (Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 3.004e-17
Identity = 45/96 (46.88%), Postives = 62/96 (64.58%), Query Frame = 1
Query:    4 EIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 291
            E+I TF LV+T+F++ D KR+     +     L IGF+V + HL  I  TG  +NPARSFG AVI  N   W +HWI+WVGP +GA+ A A ++Y+
Sbjct:  163 ELIITFQLVFTIFASCDSKRTDVTGSIA----LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WANHWIYWVGPIMGAVLAGALYEYV 251          
BLAST of CF417675 vs. ExPASy Swiss-Prot
Match: AQP1_PONAB (Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 3.924e-17
Identity = 50/97 (51.55%), Postives = 62/97 (63.92%), Query Frame = 1
Query:    4 EIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 294
            EIIGT  LV  V + TD +R  RD  +   APL IG +V + HL  I  TG GINPARSFG+AVI +N   + +HWIFWVGPF+G   A   + +IL
Sbjct:  142 EIIGTLQLVLCVLATTDRRR--RD--LGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHN---FSNHWIFWVGPFIGGALAVLIYDFIL 231          
BLAST of CF417675 vs. ExPASy Swiss-Prot
Match: AQP1_HUMAN (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 3.924e-17
Identity = 50/97 (51.55%), Postives = 62/97 (63.92%), Query Frame = 1
Query:    4 EIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 294
            EIIGT  LV  V + TD +R  RD  +   APL IG +V + HL  I  TG GINPARSFG+AVI +N   + +HWIFWVGPF+G   A   + +IL
Sbjct:  142 EIIGTLQLVLCVLATTDRRR--RD--LGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHN---FSNHWIFWVGPFIGGALAVLIYDFIL 231          
The following BLAST results are available for this feature:
BLAST of CF417675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
AQP1_PIG2.717e-1852.58Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3[more]
AQP1_SHEEP3.549e-1852.58Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3[more]
AQP4_RAT4.635e-1847.92Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]
AQP1_BOVIN4.635e-1852.58Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3[more]
AQP4_NOTAL6.053e-1846.88Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
AQP4_HUMAN1.761e-1745.83Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
AQP4_DIPME1.761e-1745.83Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]
AQP4_MOUSE3.004e-1746.88Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2[more]
AQP1_PONAB3.924e-1751.55Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3[more]
AQP1_HUMAN3.924e-1751.55Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-605 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417675 ID=CF417675; Name=CF417675; organism=Citrus sinensis; type=EST; length=562bp
GCTGAGATTATTGGTACCTTCGTGCTTGTTTACACAGTCTTCTCGGCCAC
AGACCCCAAGAGAAGCGCTCGTGACTCTCACGTGCCCGTTTTGGCTCCAC
TTCCAATTGGATTTGCTGTGTTCATGGTTCACTTGGCCACCATCCCCATC
ACTGGAACGGGCATCAACCCTGCTAGGAGCTTTGGTGCTGCTGTTATCTA
CAACAATGACAAGGCCTGGGATGACCATTGGATCTTCTGGGTTGGTCCTT
TCGTTGGAGCATTGGCTGCAGCGGCATACCACCAGTACATCTTGAGGGCT
GCTGCTATCAAGGCTTTGGGATCATTCCGCAGCAACCCTTCAAACTAAGA
AAGCAAATTATGATGAATATGAACCACCAACCAGAATAGCTTTATTTATC
TCTTTTTCCTTTCTCTCTTTCTGTTATTTGTTCGCTTGTGTCTATTATGA
GATGATGTTTGCTATGATAATTATGACCCTTCTCTTTATTTTTCCATTTC
ATATTTTGATTGAGTAGCTATAGCTTTGTCTCCGTGAATCATTGTTAATG
AGTAGTGGTGAT
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