CF417675

Overview
NameCF417675
Unique NameCF417675
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length562
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417675 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.800e-12
Identity = 42/97 (43.30%), Postives = 58/97 (59.79%), Query Frame = 1
Query:    4 EIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 291
            EII TF LVYTV++ A DPK+ +    +  +AP+ IGF V    L   P +G  +NPARSFG AV   +   + + WI+WVGP VG   A   ++Y+
Sbjct:  145 EIIVTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILVAGPFSGGSMNPARSFGPAVASGD---YTNIWIYWVGPLVGGGLAGLVYRYV 234          
BLAST of CF417675 vs. ExPASy Swiss-Prot
Match: TIP21_ORYSJ (Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.800e-12
Identity = 42/94 (44.68%), Postives = 57/94 (60.64%), Query Frame = 1
Query:    4 EIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFV-GALAAAAY 279
            EI+ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARSFG AV   N   +  +W++WVGP + G LA   Y
Sbjct:  145 EIVITFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGN---FAGNWVYWVGPLIGGGLAGLVY 231          
BLAST of CF417675 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.800e-12
Identity = 43/94 (45.74%), Postives = 56/94 (59.57%), Query Frame = 1
Query:    4 EIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFV-GALAAAAY 279
            EII TF LVYTV++ A DPK+ +    +  +APL IG  V    LA  P +G  +NPARSFG AV   +   +  HW++WVGP + G LA   Y
Sbjct:  146 EIIITFALVYTVYATAADPKKGS----LGTIAPLAIGLIVGANILAAGPFSGGSMNPARSFGPAVAAGD---FSGHWVYWVGPLIGGGLAGLIY 232          
BLAST of CF417675 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.483e-12
Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = 1
Query:    4 EIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVG 258
            EII TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARSFG AV+  +   +  +WI+W GP +G
Sbjct:  146 EIIITFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGD---FSQNWIYWAGPLIG 224          
BLAST of CF417675 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.483e-12
Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = 1
Query:    4 EIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVG 258
            EII TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARSFG AV+  +   +  +WI+W GP +G
Sbjct:  146 EIIITFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGD---FSQNWIYWAGPLIG 224          
BLAST of CF417675 vs. ExPASy Swiss-Prot
Match: TIP21_MAIZE (Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.444e-11
Identity = 41/94 (43.62%), Postives = 57/94 (60.64%), Query Frame = 1
Query:    4 EIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFV-GALAAAAY 279
            E++ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARSFG AV   +   +  +W++WVGP V G LA   Y
Sbjct:  145 EVVITFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGD---FAGNWVYWVGPLVGGGLAGLVY 231          
BLAST of CF417675 vs. ExPASy Swiss-Prot
Match: AQPZ_SYNY3 (Aquaporin Z OS=Synechocystis sp. (strain PCC 6803) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.444e-11
Identity = 36/97 (37.11%), Postives = 49/97 (50.52%), Query Frame = 1
Query:    4 EIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAA-AYHQYI 291
            E + TF+ +  +   TD    A        AP  IG A+ ++HL +IPIT T +NPARS G A+   N       W+FW+ P  GAL A   YH  +
Sbjct:  146 EFVLTFIFLIVILGVTDKTAPAG------FAPAAIGLALTLIHLISIPITNTSVNPARSTGVALFCGNPALIGQLWLFWLAPIAGALLAGFVYHNVL 236          
BLAST of CF417675 vs. ExPASy Swiss-Prot
Match: AQPZ_GLOVI (Aquaporin Z OS=Gloeobacter violaceus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.444e-11
Identity = 36/97 (37.11%), Postives = 60/97 (61.86%), Query Frame = 1
Query:    4 EIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVG-ALAAAAYHQYI 291
            E++ TF+ +  +  +TD +R+ +       AP+ IG ++ ++HL +IP+T T +NPARS G A ++  D A  + W+FW+ P VG ALA   YH ++
Sbjct:  139 EVVMTFMFLMIILGSTD-RRAPKG-----FAPIAIGLSLTLIHLISIPVTNTSVNPARSTGPA-LFVGDWAIAELWLFWLAPIVGAALAGLFYHAFL 228          
BLAST of CF417675 vs. ExPASy Swiss-Prot
Match: AQPZ_BORPA (Aquaporin Z OS=Bordetella parapertussis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.444e-11
Identity = 35/96 (36.46%), Postives = 55/96 (57.29%), Query Frame = 1
Query:    4 EIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 291
            EI+ +   V+ +  ATD +  A        AP+PIG A+ ++HL +IP+T T +NPARS G A ++    A +  W+FW+ P  GAL  A  ++ +
Sbjct:  141 EIVLSAGFVFVILGATDKRAPAG------FAPIPIGLALTLIHLISIPVTNTSVNPARSTGPA-LFVGGWALEQLWLFWLAPIAGALVGALAYRLV 229          
BLAST of CF417675 vs. ExPASy Swiss-Prot
Match: AQPZ_BORBR (Aquaporin Z OS=Bordetella bronchiseptica GN=aqpZ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.444e-11
Identity = 35/96 (36.46%), Postives = 55/96 (57.29%), Query Frame = 1
Query:    4 EIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 291
            EI+ +   V+ +  ATD +  A        AP+PIG A+ ++HL +IP+T T +NPARS G A ++    A +  W+FW+ P  GAL  A  ++ +
Sbjct:  141 EIVLSAGFVFVILGATDKRAPAG------FAPIPIGLALTLIHLISIPVTNTSVNPARSTGPA-LFVGGWALEQLWLFWLAPIAGALVGALAYRLV 229          
The following BLAST results are available for this feature:
BLAST of CF417675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
TIP22_ORYSJ3.800e-1243.30Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
TIP21_ORYSJ3.800e-1244.68Probable aquaporin TIP2-1 OS=Oryza sativa subsp. j... [more]
TIP21_ARATH3.800e-1245.74Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
TIP2_TOBAC6.483e-1245.35Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]
TIP1_TOBAC6.483e-1245.35Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]
TIP21_MAIZE1.444e-1143.62Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1[more]
AQPZ_SYNY31.444e-1137.11Aquaporin Z OS=Synechocystis sp. (strain PCC 6803)... [more]
AQPZ_GLOVI1.444e-1137.11Aquaporin Z OS=Gloeobacter violaceus GN=aqpZ PE=3 ... [more]
AQPZ_BORPA1.444e-1136.46Aquaporin Z OS=Bordetella parapertussis GN=aqpZ PE... [more]
AQPZ_BORBR1.444e-1136.46Aquaporin Z OS=Bordetella bronchiseptica GN=aqpZ P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-605 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417675 ID=CF417675; Name=CF417675; organism=Citrus sinensis; type=EST; length=562bp
GCTGAGATTATTGGTACCTTCGTGCTTGTTTACACAGTCTTCTCGGCCAC
AGACCCCAAGAGAAGCGCTCGTGACTCTCACGTGCCCGTTTTGGCTCCAC
TTCCAATTGGATTTGCTGTGTTCATGGTTCACTTGGCCACCATCCCCATC
ACTGGAACGGGCATCAACCCTGCTAGGAGCTTTGGTGCTGCTGTTATCTA
CAACAATGACAAGGCCTGGGATGACCATTGGATCTTCTGGGTTGGTCCTT
TCGTTGGAGCATTGGCTGCAGCGGCATACCACCAGTACATCTTGAGGGCT
GCTGCTATCAAGGCTTTGGGATCATTCCGCAGCAACCCTTCAAACTAAGA
AAGCAAATTATGATGAATATGAACCACCAACCAGAATAGCTTTATTTATC
TCTTTTTCCTTTCTCTCTTTCTGTTATTTGTTCGCTTGTGTCTATTATGA
GATGATGTTTGCTATGATAATTATGACCCTTCTCTTTATTTTTCCATTTC
ATATTTTGATTGAGTAGCTATAGCTTTGTCTCCGTGAATCATTGTTAATG
AGTAGTGGTGAT
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