CF417690

Overview
NameCF417690
Unique NameCF417690
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length588
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417690 vs. ExPASy Swiss-Prot
Match: YAB2_ORYSJ (Protein YABBY 2 OS=Oryza sativa subsp. japonica GN=YAB2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.048e-23
Identity = 51/63 (80.95%), Postives = 56/63 (88.89%), Query Frame = 3
Query:   33 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGLVPDHQPVKK 221
            RPPEKRQRVPSAYNRFIK+EI+RIKA NPDI+HREAFS AAKNWAHFP+IHFGL   H+  KK
Sbjct:  108 RPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGL-GSHESSKK 169          
BLAST of CF417690 vs. ExPASy Swiss-Prot
Match: YAB1_ORYSJ (Protein YABBY 1 OS=Oryza sativa subsp. japonica GN=YAB1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.507e-22
Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 3
Query:   33 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGL 194
            RPPEKRQRVPSAYNRFIK+EIQRIK  NP+I+HREAFSAAAKNWAH P +HFGL
Sbjct:  104 RPPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGL 157          
BLAST of CF417690 vs. ExPASy Swiss-Prot
Match: CRC_ARATH (Protein CRABS CLAW OS=Arabidopsis thaliana GN=CRC PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 8.589e-18
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 3
Query:   12 PRPPATSRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHF 173
            P PP   +PPEK+QR+PSAYNRF++DEIQRIK+ NP+I HREAFSAAAKNWA +
Sbjct:  103 PSPPFVVKPPEKKQRLPSAYNRFMRDEIQRIKSANPEIPHREAFSAAAKNWAKY 156          
BLAST of CF417690 vs. ExPASy Swiss-Prot
Match: YAB4_ARATH (Axial regulator YABBY 4 OS=Arabidopsis thaliana GN=YAB4 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.116e-16
Identity = 37/52 (71.15%), Postives = 44/52 (84.62%), Query Frame = 3
Query:   30 SRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIH 185
            ++PPEKRQR PSAYN FIK+EI+R+KA NP + H+EAFS AAKNWAHFP  H
Sbjct:  129 NKPPEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPAH 180          
BLAST of CF417690 vs. ExPASy Swiss-Prot
Match: YABDL_ORYSJ (Protein DROOPING LEAF OS=Oryza sativa subsp. japonica GN=DL PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.039e-16
Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = 3
Query:   12 PRPPATSRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWA 167
            PR P   +PPEK+ R+PSAYNRF+++EIQRIKA  PDI HREAFS AAKNWA
Sbjct:   93 PRAPFVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWA 144          
BLAST of CF417690 vs. ExPASy Swiss-Prot
Match: YAB7_ORYSJ (Protein YABBY 7 OS=Oryza sativa subsp. japonica GN=YAB7 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.806e-15
Identity = 36/63 (57.14%), Postives = 48/63 (76.19%), Query Frame = 3
Query:    3 DELPRPPATS---RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHI 182
            D+ P P A +   +PP ++QR PSAYN F+K+EI+RIK+  P+ITH++AFS AAKNWAH P I
Sbjct:   98 DDAPAPAAAAVANKPPGRKQRTPSAYNCFVKEEIKRIKSMEPNITHKQAFSTAAKNWAHLPRI 160          
The following BLAST results are available for this feature:
BLAST of CF417690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
YAB2_ORYSJ3.048e-2380.95Protein YABBY 2 OS=Oryza sativa subsp. japonica GN... [more]
YAB1_ORYSJ7.507e-2285.19Protein YABBY 1 OS=Oryza sativa subsp. japonica GN... [more]
CRC_ARATH8.589e-1872.22Protein CRABS CLAW OS=Arabidopsis thaliana GN=CRC ... [more]
YAB4_ARATH2.116e-1671.15Axial regulator YABBY 4 OS=Arabidopsis thaliana GN... [more]
YABDL_ORYSJ8.039e-1671.15Protein DROOPING LEAF OS=Oryza sativa subsp. japon... [more]
YAB7_ORYSJ6.806e-1557.14Protein YABBY 7 OS=Oryza sativa subsp. japonica GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-620 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417690 ID=CF417690; Name=CF417690; organism=Citrus sinensis; type=EST; length=588bp
TTGATGAGCTTCCAAGGCCTCCAGCTACCAGCAGACCACCAGAGAAGAGA
CAAAGAGTCCCCTCTGCGTACAACCGATTCATCAAGGACGAGATCCAACG
CATTAAGGCTGGAAACCCTGATATAACCCACAGAGAAGCCTTCAGTGCGG
CTGCTAAGAATTGGGCCCACTTCCCACACATTCACTTTGGTCTTGTGCCT
GACCATCAGCCGGTCAAGAAGGCTAACGTGCGCCAGCAGGAAGGAGAAGA
TGTTCTGATGAAAGATGGTTTTTTCGCTTCAGCAAACGTGGGTGTCTCGC
CTTATTAAGAATGGCATGCCATTGCATATTGCTGGTTGTTTTAAATCTAA
GTTATGTCCTTTGTTATCTGTGGACTGTGTCGTCCTTTATCGCTGCAGTA
GATTCTAGCTAGTGGTTGAGTTTAACAACACTCTGTTTAATTAAGTACTT
TAATTTAATCCAATCTGTGCTTTTCAAGGTCGTTTTCATGTTTATAGTTC
TCGTCTAGTGTGTTAGTTGCCTTAATTACATATGTCTACTTTTAGACTTT
CTTATGAATTTTGCAAGCTAATCGGGCAGCTTATTGCT
back to top