CF417695

Overview
NameCF417695
Unique NameCF417695
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417695 vs. ExPASy Swiss-Prot
Match: 2AD1_SCHPO (Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta 1 isoform OS=Schizosaccharomyces pombe GN=par1 PE=1 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 9.397e-13
Identity = 25/49 (51.02%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:  256 QVAERALYLWNNDHIENLIRQNRKVILPIIFPALEKNGCNHWNQVVQKL 402
            QVAERALY +NND+  +L+ +N  +ILPII+PAL +   +HWN+V+  +
Sbjct:  420 QVAERALYFFNNDYFVHLVEENVDIILPIIYPALFEISKSHWNRVIHSM 468

HSP 2 Score: 35.039 bits (79), Expect = 9.397e-13
Identity = 18/52 (34.62%), Postives = 28/52 (53.85%), Query Frame = 2 
Query:  389 WSR---NLTVNVRKIFSEIDPELFDECLQKFKESEAKVEEIRTQCDASWEAL 535
            W+R   ++  NV K+F +I+P LFDE   ++ ES  K E+     +  W  L
Sbjct:  461 WNRVIHSMVCNVLKLFMDINPSLFDEVDAEYSESRRKKEDEEIIREERWTIL 512
[Close]
BLAST of CF417695 vs. ExPASy Swiss-Prot
Match: 2A5A_ARATH (Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform OS=Arabidopsis thaliana GN=B'ALPHA PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.363e-12
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:  256 QVAERALYLWNNDHIENLIRQNRKVILPIIFPALEKNGCNHWNQVVQKLDS 408
            QVAERAL+LWNN+H+  LI QNR VILPIIF +LEKN  +HWNQ V  L +
Sbjct:  387 QVAERALFLWNNEHVVGLIAQNRGVILPIIFASLEKNIESHWNQAVHGLSA 437
The following BLAST results are available for this feature:
BLAST of CF417695 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
2AD1_SCHPO9.397e-1351.02Serine/threonine-protein phosphatase 2A 56 kDa reg... [more]
2A5A_ARATH2.363e-1266.67Serine/threonine protein phosphatase 2A 57 kDa reg... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-625 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417695 ID=CF417695; Name=CF417695; organism=Citrus sinensis; type=EST; length=665bp
TCCCCATGGTAAGTTCTTGGTTAGTACTTAGTAACTGGAAAAATCTGTTC
CAGTCATTTCAAGTTTGAGTCAGTCAACTGTCAAAAAGTCTCCAATGCCG
TTTCACATATGGGCAGATGTTTTTTTATTTAATTCAAGTTCCCTGAATGA
GGTTCCCATTTTAGAGTCTATGCGGAATATTCTCTTTCTGTTTGCTGGTA
TAAAAATCCTTGTCTGTTTATAAATTAAATTTTGGCCACTTTATGATTGC
TTTTACAGGTGGCCGAGAGGGCTTTGTATCTGTGGAACAATGATCACATT
GAGAATTTAATCAGACAAAACAGGAAAGTTATTCTGCCCATTATCTTTCC
TGCCTTGGAAAAAAATGGTTGTAACCACTGGAATCAGGTGGTCCAGAAAC
TTGACAGTTAATGTCCGCAAGATATTCTCTGAAATTGATCCTGAGCTATT
TGATGAGTGTTTGCAAAAATTCAAAGAGAGTGAAGCAAAAGTGGAGGAGA
TCAGAACCCAATGTGATGCCTCATGGGAAGCGCTTGGAAGAGATTGCTGC
TGCAAATTCTACCAAGTAGTGAAGCAGTTATTGTACGCTCCATGATACCT
AAGCAAACATCTTCAAGCAAGTGATATGAAGACATTTTTTGTGCAGTTAA
GGGTTGCAATTTTAC
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