CF417740 | Citrus Genome Database

Overview


Name	CF417740
Unique Name	CF417740
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	676

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of CF417740 vs. ExPASy Swiss-Prot
Match: LIS1_PONAB (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Pongo abelii GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 5.216e-23
Identity = 69/231 (29.87%), Postives = 109/231 (47.19%), Query Frame = 3

Query:   12 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD-WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP----------TGSGTNNPNQQ-LILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIVKT 668
            TL  H   I  + ++  G  L + S D T  +WD +  E  +    H      V    N     ++S D  I + ++     +KTF GH+  V  V+ +  G+L+ASCS+D T ++W +   +   +LREH   +  I W+P          TGS T    +    L S S D T+K+WDV  G  L +L GH   V  + F   G+++ S + DK++ +W  K  + +KT
Sbjct:  145 TLKGHTDSIQDIPFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT 375

HSP 2 Score: 90.5077 bits (223), Expect = 8.618e-18
Identity = 48/144 (33.33%), Postives = 81/144 (56.25%), Query Frame = 3

Query:  249 RPIKTFA--GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIVKTYT 674
            RP + +A  GH+  V  V + P  S++ S S+D T K+W+ +   +   L+ H+  I  I +  +G          +LAS S D T+KLWD +  + + +++GH   V S+A  PNG+++ S S DK++ +W ++ G  VKT+T
Sbjct:   97 RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSIQDIPFDHSGK---------LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT 231

[Close]

BLAST of CF417740 vs. ExPASy Swiss-Prot
Match: LIS1_PANTR (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Pan troglodytes GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 5.216e-23
Identity = 68/231 (29.44%), Postives = 109/231 (47.19%), Query Frame = 3

Query:   12 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD-WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP----------TGSGTNNPNQQ-LILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIVKT 668
            TL  H   +  + ++  G  L + S D T  +WD +  E  +    H      V    N     ++S D  I + ++     +KTF GH+  V  V+ +  G+L+ASCS+D T ++W +   +   +LREH   +  I W+P          TGS T    +    L S S D T+K+WDV  G  L +L GH   V  + F   G+++ S + DK++ +W  K  + +KT
Sbjct:  145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT 375

HSP 2 Score: 90.5077 bits (223), Expect = 8.618e-18
Identity = 47/144 (32.64%), Postives = 81/144 (56.25%), Query Frame = 3

Query:  249 RPIKTFA--GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIVKTYT 674
            RP + +A  GH+  V  V + P  S++ S S+D T K+W+ +   +   L+ H+  +  I +  +G          +LAS S D T+KLWD +  + + +++GH   V S+A  PNG+++ S S DK++ +W ++ G  VKT+T
Sbjct:   97 RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK---------LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT 231

[Close]

BLAST of CF417740 vs. ExPASy Swiss-Prot
Match: LIS1_MOUSE (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Mus musculus GN=Pafah1b1 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.216e-23
Identity = 68/231 (29.44%), Postives = 109/231 (47.19%), Query Frame = 3

Query:   12 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD-WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP----------TGSGTNNPNQQ-LILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIVKT 668
            TL  H   +  + ++  G  L + S D T  +WD +  E  +    H      V    N     ++S D  I + ++     +KTF GH+  V  V+ +  G+L+ASCS+D T ++W +   +   +LREH   +  I W+P          TGS T    +    L S S D T+K+WDV  G  L +L GH   V  + F   G+++ S + DK++ +W  K  + +KT
Sbjct:  145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT 375

HSP 2 Score: 90.5077 bits (223), Expect = 8.618e-18
Identity = 47/144 (32.64%), Postives = 81/144 (56.25%), Query Frame = 3

Query:  249 RPIKTFA--GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIVKTYT 674
            RP + +A  GH+  V  V + P  S++ S S+D T K+W+ +   +   L+ H+  +  I +  +G          +LAS S D T+KLWD +  + + +++GH   V S+A  PNG+++ S S DK++ +W ++ G  VKT+T
Sbjct:   97 RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK---------LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT 231

[Close]

BLAST of CF417740 vs. ExPASy Swiss-Prot
Match: LIS1_MACFA (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Macaca fascicularis GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 5.216e-23
Identity = 68/231 (29.44%), Postives = 109/231 (47.19%), Query Frame = 3

Query:   12 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD-WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP----------TGSGTNNPNQQ-LILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIVKT 668
            TL  H   +  + ++  G  L + S D T  +WD +  E  +    H      V    N     ++S D  I + ++     +KTF GH+  V  V+ +  G+L+ASCS+D T ++W +   +   +LREH   +  I W+P          TGS T    +    L S S D T+K+WDV  G  L +L GH   V  + F   G+++ S + DK++ +W  K  + +KT
Sbjct:  145 TLKGHTDSVQDISFDHSGKLLTSCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHLVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT 375

HSP 2 Score: 89.7373 bits (221), Expect = 1.470e-17
Identity = 47/144 (32.64%), Postives = 80/144 (55.56%), Query Frame = 3

Query:  249 RPIKTFA--GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIVKTYT 674
            RP + +A  GH+  V  V + P  S++ S S+D T K+W+ +   +   L+ H+  +  I +  +G          +L S S D T+KLWD +  + + +++GH   V S+A  PNG++L S S DK++ +W ++ G  VKT+T
Sbjct:   97 RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK---------LLTSCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHLVSASRDKTIKMWEVQTGYCVKTFT 231

[Close]

BLAST of CF417740 vs. ExPASy Swiss-Prot
Match: LIS1_HUMAN (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Homo sapiens GN=PAFAH1B1 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.216e-23
Identity = 68/231 (29.44%), Postives = 109/231 (47.19%), Query Frame = 3

Query:   12 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD-WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP----------TGSGTNNPNQQ-LILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIVKT 668
            TL  H   +  + ++  G  L + S D T  +WD +  E  +    H      V    N     ++S D  I + ++     +KTF GH+  V  V+ +  G+L+ASCS+D T ++W +   +   +LREH   +  I W+P          TGS T    +    L S S D T+K+WDV  G  L +L GH   V  + F   G+++ S + DK++ +W  K  + +KT
Sbjct:  145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT 375

HSP 2 Score: 90.5077 bits (223), Expect = 8.618e-18
Identity = 47/144 (32.64%), Postives = 81/144 (56.25%), Query Frame = 3

Query:  249 RPIKTFA--GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIVKTYT 674
            RP + +A  GH+  V  V + P  S++ S S+D T K+W+ +   +   L+ H+  +  I +  +G          +LAS S D T+KLWD +  + + +++GH   V S+A  PNG+++ S S DK++ +W ++ G  VKT+T
Sbjct:   97 RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK---------LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT 231

[Close]

BLAST of CF417740 vs. ExPASy Swiss-Prot
Match: LIS1_DROME (Lissencephaly-1 homolog OS=Drosophila melanogaster GN=Lis-1 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.216e-23
Identity = 68/232 (29.31%), Postives = 113/232 (48.71%), Query Frame = 3

Query:   12 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVDWRNNVSFATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS--------GTNNP---NQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIVKT 668
            +L  H   +  + ++ +G  L + S D +  +WD +   E  +    H      V +     +  S S D  I + ++     +KT+ GH+  V  V+    GS+ A+CS+D T ++W         +LR+H   +  I W+P  +        G +N    +Q   LAS S D T+++WDV +G  L +L+GH   V  LAF P G+YL S S DK++ +W L+  + +KT
Sbjct:  145 SLKGHTDSVQDVAFDAQGKLLASCSADLSIKLWDFQQSYECIKTMHGHDHNVSSVAFVPAGDYVLSASRDRTIKMWEVATGYCVKTYTGHREWVRMVRVHIEGSIFATCSNDQTIRVWLTNSKDCKVELRDHEHTVECIAWAPEAAASAINEAAGADNKKGHHQGPFLASGSRDKTIRIWDVSVGLCLLTLSGHDNWVRGLAFHPGGKYLVSASDDKTIRVWDLRNKRCMKT 376

HSP 2 Score: 86.6557 bits (213), Expect = 1.244e-16
Identity = 46/145 (31.72%), Postives = 80/145 (55.17%), Query Frame = 3

Query:  249 RPIKTFA--GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIVKTYT 674
            RP + F+  GH+  +  V + P  +L+ S S+D T +IW+ +  +Y   L+ H+  +  + +   G          +LAS S D ++KLWD +   + + +++GH   V S+AF P G+Y+ S S D+++ +W +  G  VKTYT
Sbjct:   97 RPPEKFSLTGHRASITRVIFHPIFALMVSASEDATIRIWDFETGEYERSLKGHTDSVQDVAFDAQGK---------LLASCSADLSIKLWDFQQSYECIKTMHGHDHNVSSVAFVPAGDYVLSASRDRTIKMWEVATGYCVKTYT 232

HSP 3 Score: 75.8702 bits (185), Expect = 2.197e-13
Identity = 59/242 (24.38%), Postives = 96/242 (39.67%), Query Frame = 3

Query:   12 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT----------EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--------------------GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLK 647
            T+  H   + S+ +   GDY+L+ S D+T  +W+V T           EW +    H   ++         FAT S D  I V              H+  V C+ W P                     G  LAS S D T +IW++     +  L  H   +  + + P G           L SAS D T+++WD+   + + +L  H+    S+ F     Y+ SGS+D+++ +W  +
Sbjct:  188 TMHGHDHNVSSVAFVPAGDYVLSASRDRTIKMWEVATGYCVKTYTGHREWVRMVRVHIEGSI---------FATCSNDQTIRVWLTNSKDCKVELRDHEHTVECIAWAPEAAASAINEAAGADNKKGHHQGPFLASGSRDKTIRIWDVSVGLCLLTLSGHDNWVRGLAFHPGGK---------YLVSASDDKTIRVWDLRNKRCMKTLYAHQHFCTSIDFHKAHPYVISGSVDQTVKVWECR 411

HSP 4 Score: 70.8626 bits (172), Expect = 7.066e-12
Identity = 41/147 (27.89%), Postives = 71/147 (48.30%), Query Frame = 3

Query:  201 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIW 638
            ++S D  I +         ++  GH   V  V +D  G LLASCS D++ K+W+ +Q  + +  +  H   + ++ + P G           + SAS D T+K+W+V  G  + +  GHRE V  +     G   A+ S D+++ +W
Sbjct:  125 SASEDATIRIWDFETGEYERSLKGHTDSVQDVAFDAQGKLLASCSADLSIKLWDFQQSYECIKTMHGHDHNVSSVAFVPAGD---------YVLSASRDRTIKMWEVATGYCVKTYTGHREWVRMVRVHIEGSIFATCSNDQTIRVW 262

[Close]

BLAST of CF417740 vs. ExPASy Swiss-Prot
Match: LIS1_BOVIN (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Bos taurus GN=PAFAH1B1 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.216e-23
Identity = 68/231 (29.44%), Postives = 109/231 (47.19%), Query Frame = 3

Query:   12 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD-WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP----------TGSGTNNPNQQ-LILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIVKT 668
            TL  H   +  + ++  G  L + S D T  +WD +  E  +    H      V    N     ++S D  I + ++     +KTF GH+  V  V+ +  G+L+ASCS+D T ++W +   +   +LREH   +  I W+P          TGS T    +    L S S D T+K+WDV  G  L +L GH   V  + F   G+++ S + DK++ +W  K  + +KT
Sbjct:  145 TLKGHTDSVEDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT 375

HSP 2 Score: 90.1225 bits (222), Expect = 1.126e-17
Identity = 47/144 (32.64%), Postives = 81/144 (56.25%), Query Frame = 3

Query:  249 RPIKTFA--GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIVKTYT 674
            RP + +A  GH+  V  V + P  S++ S S+D T K+W+ +   +   L+ H+  +  I +  +G          +LAS S D T+KLWD +  + + +++GH   V S+A  PNG+++ S S DK++ +W ++ G  VKT+T
Sbjct:   97 RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVEDISFDHSGK---------LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT 231

[Close]

BLAST of CF417740 vs. ExPASy Swiss-Prot
Match: LIS1A_DANRE (Lissencephaly-1 homolog A OS=Danio rerio GN=pafah1b1a PE=2 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 5.216e-23
Identity = 69/231 (29.87%), Postives = 108/231 (46.75%), Query Frame = 3

Query:   12 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD-WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP----------TGSGTNNPNQQ-LILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIVKT 668
            TL  H   +  + ++  G  L + S D T  +WD +  E  +    H      V    N     ++S D  I + ++     +KTF GH+  V  V+ +  G+L+AS S+D T ++W +   +   +LREH   +  I W+P          TGS T    +    L S S D T+K+WDV +G  L +L GH   V  +   P G+Y+ S + DK++ IW  K  +  KT
Sbjct:  145 TLKGHTDSVQDISFDHTGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVATGYCVKTFTGHREWVRMVRPNQDGTLIASSSNDQTVRVWVVATKECKAELREHEHVVECISWAPESAHPTILEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSIGMCLMTLVGHDNWVRGVLVHPGGKYIVSCADDKTLRIWDYKNKRCTKT 375

HSP 2 Score: 90.8929 bits (224), Expect = 6.599e-18
Identity = 48/144 (33.33%), Postives = 80/144 (55.56%), Query Frame = 3

Query:  249 RPIKTFA--GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIVKTYT 674
            RP + +A  GH+  V  V + P  S++ S S+D T K+W+ +   +   L+ H+  +  I +  TG          +LAS S D T+KLWD +  + + +++GH   V S+A  PNG+++ S S DK++ +W +  G  VKT+T
Sbjct:   97 RPPEKYALSGHRSPVTRVIFHPVFSVIVSASEDATIKVWDHETGDFERTLKGHTDSVQDISFDHTGK---------LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVATGYCVKTFT 231

[Close]

BLAST of CF417740 vs. ExPASy Swiss-Prot
Match: PKWA_THECU (Probable serine/threonine-protein kinase pkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.813e-23
Identity = 68/212 (32.08%), Postives = 110/212 (51.89%), Query Frame = 3

Query:   12 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF-ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSL 644
            TL  H   + ++ ++  G  L +GS D T  +WDV   E +  FE H+   LD+ +  + S  A+ S D    +  +          GH   V  V + P GS++AS S D T ++W++   K    L+  ++ + ++ +SP GS        L+  S   DSTV LWDV  G+ L++  GH + V ++AFSP+G  LASGS D+++ +W +
Sbjct:  496 TLEGHTDWVRAVAFSPDGALLASGSDDATVRLWDVAAAEERAVFEGHTHYVLDIAFSPDGSMVASGSRDGTARLWNVATGTEHAVLKGHTDYVYAVAFSPDGSMVASGSRDGTIRLWDVATGKERDVLQAPAENVVSLAFSPDGS-------MLVHGS---DSTVHLWDVASGEALHTFEGHTDWVRAVAFSPDGALLASGSDDRTIRLWDV 697

HSP 2 Score: 97.0561 bits (240), Expect = 9.208e-20
Identity = 54/153 (35.29%), Postives = 81/153 (52.94%), Query Frame = 3

Query:  198 ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGK 656
            A  S D +I+V  +     + T  GH   V  V + P G+LLAS SDD T ++W++   +       H+  +  I +SP GS         ++AS S D T +LW+V  G     L GH + VY++AFSP+G  +ASGS D ++ +W +  GK
Sbjct:  475 AGGSGDKLIHVWDVASGDELHTLEGHTDWVRAVAFSPDGALLASGSDDATVRLWDVAAAEERAVFEGHTHYVLDIAFSPDGS---------MVASGSRDGTARLWNVATGTEHAVLKGHTDYVYAVAFSPDGSMVASGSRDGTIRLWDVATGK 618

HSP 3 Score: 79.7221 bits (195), Expect = 1.521e-14
Identity = 42/168 (25.00%), Postives = 85/168 (50.60%), Query Frame = 3

Query:   15 LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 518
            L  H   ++++ ++  G  + +GS D T  +WDV T + +   +  +   + + +  + S     +D+ +++  +     + TF GH   V  V + P G+LLAS SDD T ++W++   +    L  H++ ++++ + P G+          LASAS D T+++W +
Sbjct:  581 LKGHTDYVYAVAFSPDGSMVASGSRDGTIRLWDVATGKERDVLQAPAENVVSLAFSPDGSMLVHGSDSTVHLWDVASGEALHTFEGHTDWVRAVAFSPDGALLASGSDDRTIRLWDVAAQEEHTTLEGHTEPVHSVAFHPEGT---------TLASASEDGTIRIWPI 739

HSP 4 Score: 78.1814 bits (191), Expect = 4.426e-14
Identity = 43/124 (34.68%), Postives = 64/124 (51.61%), Query Frame = 3

Query:  282 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEG 653
            E   V + P GSLLA  S D    +W++     +H L  H+  +  + +SP G+         +LAS S D+TV+LWDV   +      GH   V  +AFSP+G  +ASGS D +  +W++  G
Sbjct:  461 EAVAVAFSPGGSLLAGGSGDKLIHVWDVASGDELHTLEGHTDWVRAVAFSPDGA---------LLASGSDDATVRLWDVAAAEERAVFEGHTHYVLDIAFSPDGSMVASGSRDGTARLWNVATG 575

[Close]

BLAST of CF417740 vs. ExPASy Swiss-Prot
Match: LIS1_CHICK (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Gallus gallus GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 6.813e-23
Identity = 67/231 (29.00%), Postives = 109/231 (47.19%), Query Frame = 3

Query:   12 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD-WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP----------TGSGTNNPNQQ-LILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIVKT 668
            TL  H   +  + ++  G  L + S D T  +WD +  E  +    H      V    N     ++S D  I + ++     +KTF GH+  V  V+ +  G+L+ASCS+D T ++W +   +   +LREH   +  I W+P          TGS T    +    L S S D T+K+WD+  G  L +L GH   V  + F   G+++ S + DK++ +W  K  + +KT
Sbjct:  145 TLKGHTDSVQDISFDHTGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSTISEATGSETKKSGKPGPFLLSGSRDKTIKMWDISTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDFKNKRCMKT 375

HSP 2 Score: 92.0485 bits (227), Expect = 2.962e-18
Identity = 48/144 (33.33%), Postives = 81/144 (56.25%), Query Frame = 3

Query:  249 RPIKTFA--GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIVKTYT 674
            RP + +A  GH+  V  V + P  S++ S S+D T K+W+ +   +   L+ H+  +  I +  TG          +LAS S D T+KLWD +  + + +++GH   V S+A  PNG+++ S S DK++ +W ++ G  VKT+T
Sbjct:   97 RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHTGK---------LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT 231

The following BLAST results are available for this feature:

BLAST of CF417740 vs. ExPASy Swiss-Prot

BLAST of CF417740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 466


Match Name	E-value	Identity	Description
LIS1_PONAB	5.216e-23	29.87	Platelet-activating factor acetylhydrolase IB subu...	[more]
LIS1_PANTR	5.216e-23	29.44	Platelet-activating factor acetylhydrolase IB subu...	[more]
LIS1_MOUSE	5.216e-23	29.44	Platelet-activating factor acetylhydrolase IB subu...	[more]
LIS1_MACFA	5.216e-23	29.44	Platelet-activating factor acetylhydrolase IB subu...	[more]
LIS1_HUMAN	5.216e-23	29.44	Platelet-activating factor acetylhydrolase IB subu...	[more]
LIS1_DROME	5.216e-23	29.31	Lissencephaly-1 homolog OS=Drosophila melanogaster...	[more]
LIS1_BOVIN	5.216e-23	29.44	Platelet-activating factor acetylhydrolase IB subu...	[more]
LIS1A_DANRE	5.216e-23	29.87	Lissencephaly-1 homolog A OS=Danio rerio GN=pafah1...	[more]
PKWA_THECU	6.813e-23	32.08	Probable serine/threonine-protein kinase pkwA OS=T...	[more]
LIS1_CHICK	6.813e-23	29.00	Platelet-activating factor acetylhydrolase IB subu...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_115000-670 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_F07 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417740 ID=CF417740; Name=CF417740; organism=Citrus sinensis; type=EST; length=676bp
ATCTGAAGTGTACCTTGAGTAAACATAAAGGACCCATATTTTCCCTTAAG
TGGAACAAGAAGGGTGATTACCTTCTCACCGGAAGCTGTGATAAAACTGC
AATAGTATGGGATGTGAAGACAGAGGAATGGAAACAGCAATTTGAATTTC
ATTCAGGTCCAACGCTTGATGTTGACTGGCGCAATAATGTTTCATTTGCC
ACAAGCTCGACAGACAACATGATATATGTGTGTAAAATTGGGGAAAACCG
CCCTATTAAAACTTTTGCAGGGCATCAGGGTGAGGTTAACTGTGTTAAAT
GGGATCCAACAGGTTCGTTGTTGGCCTCTTGCTCAGATGACGTCACTGCC
AAGATATGGAACATGAAGCAGGACAAGTATGTTCATGATTTGAGAGAGCA
TTCCAAGGAGATATATACTATCAGATGGAGTCCTACAGGATCAGGGACGA
ATAATCCTAACCAGCAATTGATCCTAGCGAGTGCTTCTTTCGACTCTACA
GTAAAGCTTTGGGATGTAGAGCTAGGGAAACTCCTCTACAGTTTGAATGG
ACACAGGGAACCTGTGTACTCGCTCGCATTTAGCCCTAATGGGGAGTATT
TAGCAAGTGGATCTCTTGATAAATCCATGCACATCTGGTCACTGAAGGAA
GGAAAGATTGTGAAGACGTACACTGG