CF417741

Overview
NameCF417741
Unique NameCF417741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417741 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.255e-45
Identity = 83/92 (90.22%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:  409 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG 684
            +GPD  KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEG
Sbjct:   13 HGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEG 104
[Close]
BLAST of CF417741 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.945e-45
Identity = 82/92 (89.13%), Postives = 87/92 (94.57%), Query Frame = 1 
Query:  409 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG 684
            YGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+ ++NGVKFGEAVWFKAG+QIFSEG
Sbjct:   51 YGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEG 142
[Close]
BLAST of CF417741 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.568e-45
Identity = 82/92 (89.13%), Postives = 87/92 (94.57%), Query Frame = 1 
Query:  409 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG 684
            YGPDR KYLGPFS + PSYLTGEFPGDYGWDTA LSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEG
Sbjct:   52 YGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEG 143
[Close]
BLAST of CF417741 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.568e-45
Identity = 81/92 (88.04%), Postives = 86/92 (93.48%), Query Frame = 1 
Query:  409 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG 684
            YGPDR KYLGPFS + PSYLTGEFP DYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+ ++NG+KFGEAVWFKAGAQIFSEG
Sbjct:   52 YGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEG 143
[Close]
BLAST of CF417741 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.568e-45
Identity = 81/92 (88.04%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:  409 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG 684
            YG DR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFS+G
Sbjct:   51 YGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDG 142
[Close]
BLAST of CF417741 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.568e-45
Identity = 81/92 (88.04%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:  409 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG 684
            YG DR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFS+G
Sbjct:   51 YGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDG 142
[Close]
BLAST of CF417741 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.119e-44
Identity = 82/92 (89.13%), Postives = 87/92 (94.57%), Query Frame = 1 
Query:  409 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG 684
            YGPDR  YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEG
Sbjct:   50 YGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEG 141
[Close]
BLAST of CF417741 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.462e-44
Identity = 82/92 (89.13%), Postives = 86/92 (93.48%), Query Frame = 1 
Query:  409 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG 684
            YGPDR  YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEG
Sbjct:   59 YGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEG 150
[Close]
BLAST of CF417741 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.462e-44
Identity = 81/92 (88.04%), Postives = 86/92 (93.48%), Query Frame = 1 
Query:  409 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG 684
            YGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+ ++NGVKFGEAVW KAG+QIFSEG
Sbjct:   52 YGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEG 143
[Close]
BLAST of CF417741 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.909e-44
Identity = 80/92 (86.96%), Postives = 88/92 (95.65%), Query Frame = 1 
Query:  409 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG 684
            YGP+R KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFK G+QIFS+G
Sbjct:   52 YGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQG 143
The following BLAST results are available for this feature:
BLAST of CF417741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
CB21_PEA2.255e-4590.22Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB24_PETSP2.945e-4589.13Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB25_PETSP8.568e-4589.13Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB23_PETSP8.568e-4588.04Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB22_ARATH8.568e-4588.04Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH8.568e-4588.04Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB29_MAIZE1.119e-4489.13Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB2B_PINSY1.462e-4489.13Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB22_PETSP1.462e-4488.04Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB23_NICPL1.909e-4486.96Chlorophyll a-b binding protein C, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-671 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417741 ID=CF417741; Name=CF417741; organism=Citrus sinensis; type=EST; length=686bp
TTTCGCATAAGAACATATGGCAACCTCTGCTATCCAACAATCAGCATTTG
CTGGCCAGACCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGA
GTTGCTGACGGTGGCCGTATCACCATGAGGAGGACTGTCAAATCCACTCC
CCAGAGCATCTGGTAACTACATTTTACACATTCTTAGTTGCTAAGCTTGC
TTGTGTTATTGCTTCTTTATCAAGCGTGGCATGCATGTTTGATTTTGGTT
ACCGATATGCCATTAGTTTTCAGCTTATGTAAAAATAAATAAAGAGATCA
GACATAACTTCAATTTAAAACAAAAAGCTCTAGGCGCAAGAAAAATTGTA
ATTCTAGCGTAAGCAGTCTCAAGTATCTGATCAAAGAAACCTGTAATCGA
CAAACAGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAG
CAAACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGA
TACCGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGC
TAGAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTC
TTCCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTG
GTTCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGG
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