CF417741

Overview
NameCF417741
Unique NameCF417741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF417741 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.511e-14
Identity = 37/85 (43.53%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:  415 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQ 669
            PDRP +        P +L G  PGD+G+D  GL++DPE+   N++ E++H RWAMLGA G   PE+L+K G+      W+ AG Q
Sbjct:   63 PDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQ 144
[Close]
BLAST of CF417741 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 1 
Query:  451 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQI 672
            + P+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PE+L       G+  WF+AG  +
Sbjct:  195 EPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV 261
The following BLAST results are available for this feature:
BLAST of CF417741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
CB12_SOLLC3.511e-1443.53Chlorophyll a-b binding protein 7, chloroplastic O... [more]
LH18_EUGGR1.249e-1143.24Light-harvesting complex I LH38 proteins (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-671 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417741 ID=CF417741; Name=CF417741; organism=Citrus sinensis; type=EST; length=686bp
TTTCGCATAAGAACATATGGCAACCTCTGCTATCCAACAATCAGCATTTG
CTGGCCAGACCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGA
GTTGCTGACGGTGGCCGTATCACCATGAGGAGGACTGTCAAATCCACTCC
CCAGAGCATCTGGTAACTACATTTTACACATTCTTAGTTGCTAAGCTTGC
TTGTGTTATTGCTTCTTTATCAAGCGTGGCATGCATGTTTGATTTTGGTT
ACCGATATGCCATTAGTTTTCAGCTTATGTAAAAATAAATAAAGAGATCA
GACATAACTTCAATTTAAAACAAAAAGCTCTAGGCGCAAGAAAAATTGTA
ATTCTAGCGTAAGCAGTCTCAAGTATCTGATCAAAGAAACCTGTAATCGA
CAAACAGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAG
CAAACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGA
TACCGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGC
TAGAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTC
TTCCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTG
GTTCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGG
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