CF417771 | Citrus Genome Database

Overview


Name	CF417771
Unique Name	CF417771
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	685

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF417771 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.568e-23
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 2

Query:  560 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAEL 685
            MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAEL
Sbjct:  170 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAEL 211

HSP 2 Score: 40.4318 bits (93), Expect = 4.568e-23
Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 1

Query:  505 SLIHAQSILAIWACQVVLDGS 567
            SL+HAQSILAIWACQVVL G+
Sbjct:  152 SLVHAQSILAIWACQVVLMGA 172

[Close]

BLAST of CF417771 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.568e-23
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 2

Query:  560 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAEL 685
            MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAEL
Sbjct:  170 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAEL 211

HSP 2 Score: 40.4318 bits (93), Expect = 4.568e-23
Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 1

Query:  505 SLIHAQSILAIWACQVVLDGS 567
            SL+HAQSILAIWACQVVL G+
Sbjct:  152 SLVHAQSILAIWACQVVLMGA 172

[Close]

BLAST of CF417771 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.569e-23
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 2

Query:  560 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAEL 685
            MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAEL
Sbjct:  168 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAEL 209

HSP 2 Score: 40.4318 bits (93), Expect = 4.569e-23
Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 1

Query:  505 SLIHAQSILAIWACQVVLDGS 567
            SL+HAQSILAIWACQVVL G+
Sbjct:  150 SLVHAQSILAIWACQVVLMGA 170

[Close]

BLAST of CF417771 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.569e-23
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 2

Query:  560 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAEL 685
            MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAEL
Sbjct:  168 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAEL 209

HSP 2 Score: 40.4318 bits (93), Expect = 4.569e-23
Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 1

Query:  505 SLIHAQSILAIWACQVVLDGS 567
            SL+HAQSILAIWACQVVL G+
Sbjct:  150 SLVHAQSILAIWACQVVLMGA 170

[Close]

BLAST of CF417771 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.775e-23
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 2

Query:  560 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAEL 685
            MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAEL
Sbjct:   19 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAEL 60

HSP 2 Score: 40.4318 bits (93), Expect = 4.775e-23
Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 1

Query:  505 SLIHAQSILAIWACQVVLDGS 567
            SL+HAQSILAIWACQVVL G+
Sbjct:    1 SLVHAQSILAIWACQVVLMGA 21

[Close]

BLAST of CF417771 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.018e-21
Identity = 34/43 (79.07%), Postives = 35/43 (81.40%), Query Frame = 2

Query:  560 MGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAEL 685
            MGAVEGYR+AG GPLGE  D LYPGGSFDPL    DPEAFAEL
Sbjct:   26 MGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAEL 68

HSP 2 Score: 51.6026 bits (122), Expect = 7.018e-21
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 1

Query:  484 LDYLGNPSLIHAQSILAIWACQVVLDGS 567
            LDYLGNPSL+HAQSILAIWA QV+L G+
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGA 28

[Close]

BLAST of CF417771 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 1.407e-12
Identity = 33/79 (41.77%), Postives = 41/79 (51.90%), Query Frame = 1

Query:  271 SSLVDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNP 504
            SS  D+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP
Sbjct:   61 SSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP 132

HSP 2 Score: 35.8094 bits (81), Expect = 1.407e-12
Identity = 14/21 (66.67%), Postives = 16/21 (76.19%), Query Frame = 2

Query:  623 YPGGSFDPLGLADDPEAFAEL 685
            YPGG+FDPLG + DP  F EL
Sbjct:  167 YPGGAFDPLGFSKDPAKFEEL 187

[Close]

BLAST of CF417771 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 2.489e-11
Identity = 30/75 (40.00%), Postives = 37/75 (49.33%), Query Frame = 1

Query:  283 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNP 504
            D+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG P
Sbjct:   66 DFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP 133

HSP 2 Score: 35.4242 bits (80), Expect = 2.489e-11
Identity = 14/21 (66.67%), Postives = 16/21 (76.19%), Query Frame = 2

Query:  623 YPGGSFDPLGLADDPEAFAEL 685
            YPGG+FDPLG + DP  F EL
Sbjct:  168 YPGGAFDPLGYSKDPAKFEEL 188

[Close]

BLAST of CF417771 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 2.602e-11
Identity = 31/45 (68.89%), Postives = 32/45 (71.11%), Query Frame = 2

Query:  560 MGAVEGYRI---AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAEL 685
            MGAVEGYR    A G  GE  D LYPGG FDPLGLADDP+ F EL
Sbjct:   22 MGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPEL 66

HSP 2 Score: 27.335 bits (59), Expect = 2.602e-11
Identity = 13/21 (61.90%), Postives = 18/21 (85.71%), Query Frame = 1

Query:  505 SLIHAQSILAIWACQVVLDGS 567
            +LIHA+S+LAI A QV+L G+
Sbjct:    4 ALIHAKSLLAILATQVLLMGA 24

[Close]

BLAST of CF417771 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 1

Query:  283 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 543
            D+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + +L  WA
Sbjct:   85 DFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWA 164

The following BLAST results are available for this feature:

BLAST of CF417771 vs. ExPASy Swiss-Prot

BLAST of CF417771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70


Match Name	E-value	Identity	Description
CB2F_SOLLC	4.568e-23	95.24	Chlorophyll a-b binding protein 3B, chloroplastic ...	[more]
CB2E_SOLLC	4.568e-23	95.24	Chlorophyll a-b binding protein 3A, chloroplastic ...	[more]
CB2C_SOLLC	4.569e-23	95.24	Chlorophyll a-b binding protein 1C, chloroplastic ...	[more]
CB2A_SOLLC	4.569e-23	95.24	Chlorophyll a-b binding protein 1A, chloroplastic ...	[more]
CB2D_SOLLC	4.775e-23	95.24	Chlorophyll a-b binding protein 1D (Fragment) OS=S...	[more]
CB21_RAPSA	7.018e-21	79.07	Chlorophyll a-b binding of LHCII type 1 protein (F...	[more]
CB121_HORVU	1.407e-12	41.77	Chlorophyll a-b binding protein 1B-21, chloroplast...	[more]
CB11_SOLLC	2.489e-11	40.00	Chlorophyll a-b binding protein 6A, chloroplastic ...	[more]
CB21_EUGGR	2.602e-11	68.89	Chlorophyll a-b binding protein of LHCII type 1 (F...	[more]
CB12_SOLLC	6.198e-11	37.93	Chlorophyll a-b binding protein 7, chloroplastic O...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-701 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_A03 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417771 ID=CF417771; Name=CF417771; organism=Citrus sinensis; type=EST; length=685bp
CTCTTGCTTACACAGCTTCTGTTGCTTACACAGCTTCTGCTTCTCAATTA
AATTCCTCAATGGCAACCTCGACCATGGNTCTCTCCTCATCATTCGTCGG
CAAGGCTGTGAACCTTGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGCC
GCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCG
TGGTACGGCCCGGACAGAGTCAAGTACTTGGGTCCATTCTCTGGCGAGCC
CCCAAGCTACTTGACTGGTGAGTTCCCTGGTGGACTACGGTTGGGACACT
GCTGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGA
AGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCC
CGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTC
AAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGGAA
CCCAAGCCTGATCCACGCTCAGAGCATCTTGGCCATCTGGGCTTGCCAGG
TGGTCTTGGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCT
CGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGG
GTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTC