CF417784 | Citrus Genome Database

Overview


Name	CF417784
Unique Name	CF417784
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	651

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CF417784 vs. ExPASy Swiss-Prot
Match: METK_BACC7 (S-adenosylmethionine synthetase OS=Bacillus cereus (strain AH187) GN=metK PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.217e-54
Identity = 58/107 (54.21%), Postives = 79/107 (73.83%), Query Frame = 2

Query:  284 HGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHF 604
            HGGGAFSGKD TKVDRS AY  R  AK+IVA GLA +  VQ++YAIGV +P+S+ VD++GTGK+ +  ++++V+ +FD RP  +   LDL+R     + +TAAYGHF
Sbjct:  272 HGGGAFSGKDATKVDRSAAYAARYVAKNIVAAGLAEKAEVQLAYAIGVAQPVSISVDTFGTGKVSEDVLVELVRNNFDLRPAGIIKMLDLRR---PIYKQTAAYGHF 375

HSP 2 Score: 115.161 bits (287), Expect = 2.217e-54
Identity = 59/92 (64.13%), Postives = 72/92 (78.26%), Query Frame = 1

Query:    1 QVTVEYYNDNGAMVPVRGHXVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGW 276
            QVTVEY ++NG   PVR   ++ISTQH   VT +EI  DLKEHVIK V+P + +D +T F +NP+GRFVIGGP GDAGLTGRKII+DTYGG+
Sbjct:  181 QVTVEY-DENGK--PVRVDTIVISTQHHPDVTWEEIDRDLKEHVIKAVVPAELIDGETKFFINPTGRFVIGGPQGDAGLTGRKIIVDTYGGY 269

BLAST of CF417784 vs. ExPASy Swiss-Prot
Match: METK_BACC4 (S-adenosylmethionine synthetase OS=Bacillus cereus (strain B4264) GN=metK PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.217e-54
Identity = 58/107 (54.21%), Postives = 79/107 (73.83%), Query Frame = 2

Query:  284 HGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHF 604
            HGGGAFSGKD TKVDRS AY  R  AK+IVA GLA +  VQ++YAIGV +P+S+ VD++GTGK+ +  ++++V+ +FD RP  +   LDL+R     + +TAAYGHF
Sbjct:  272 HGGGAFSGKDATKVDRSAAYAARYVAKNIVAAGLAEKAEVQLAYAIGVAQPVSISVDTFGTGKVSEDVLVELVRNNFDLRPAGIIKMLDLRR---PIYKQTAAYGHF 375

HSP 2 Score: 115.161 bits (287), Expect = 2.217e-54
Identity = 59/92 (64.13%), Postives = 72/92 (78.26%), Query Frame = 1

Query:    1 QVTVEYYNDNGAMVPVRGHXVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGW 276
            QVTVEY ++NG   PVR   ++ISTQH   VT +EI  DLKEHVIK V+P + +D +T F +NP+GRFVIGGP GDAGLTGRKII+DTYGG+
Sbjct:  181 QVTVEY-DENGK--PVRVDTIVISTQHHPDVTWEEIDRDLKEHVIKAVVPAELMDGETKFFINPTGRFVIGGPQGDAGLTGRKIIVDTYGGY 269

BLAST of CF417784 vs. ExPASy Swiss-Prot
Match: METK_BACC3 (S-adenosylmethionine synthetase OS=Bacillus cereus (strain 03BB102) GN=metK PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.217e-54
Identity = 58/107 (54.21%), Postives = 79/107 (73.83%), Query Frame = 2

Query:  284 HGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHF 604
            HGGGAFSGKD TKVDRS AY  R  AK+IVA GLA +  VQ++YAIGV +P+S+ VD++GTGK+ +  ++++V+ +FD RP  +   LDL+R     + +TAAYGHF
Sbjct:  272 HGGGAFSGKDATKVDRSAAYAARYVAKNIVAAGLAEKAEVQLAYAIGVAQPVSISVDTFGTGKVSEDVLVELVRNNFDLRPAGIIKMLDLRR---PIYKQTAAYGHF 375

HSP 2 Score: 115.161 bits (287), Expect = 2.217e-54
Identity = 59/92 (64.13%), Postives = 72/92 (78.26%), Query Frame = 1

Query:    1 QVTVEYYNDNGAMVPVRGHXVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGW 276
            QVTVEY ++NG   PVR   ++ISTQH   VT +EI  DLKEHVIK V+P + +D +T F +NP+GRFVIGGP GDAGLTGRKII+DTYGG+
Sbjct:  181 QVTVEY-DENGK--PVRVDTIVISTQHHPDVTWEEIDRDLKEHVIKAVVPAELIDGETKFFINPTGRFVIGGPQGDAGLTGRKIIVDTYGGY 269

BLAST of CF417784 vs. ExPASy Swiss-Prot
Match: METK_BACC1 (S-adenosylmethionine synthetase OS=Bacillus cereus (strain ATCC 10987) GN=metK PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.217e-54
Identity = 58/107 (54.21%), Postives = 79/107 (73.83%), Query Frame = 2

Query:  284 HGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHF 604
            HGGGAFSGKD TKVDRS AY  R  AK+IVA GLA +  VQ++YAIGV +P+S+ VD++GTGK+ +  ++++V+ +FD RP  +   LDL+R     + +TAAYGHF
Sbjct:  272 HGGGAFSGKDATKVDRSAAYAARYVAKNIVAAGLAEKAEVQLAYAIGVAQPVSISVDTFGTGKVSEDVLVELVRNNFDLRPAGIIKMLDLRR---PIYKQTAAYGHF 375

HSP 2 Score: 115.161 bits (287), Expect = 2.217e-54
Identity = 59/92 (64.13%), Postives = 72/92 (78.26%), Query Frame = 1

Query:    1 QVTVEYYNDNGAMVPVRGHXVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGW 276
            QVTVEY ++NG   PVR   ++ISTQH   VT +EI  DLKEHVIK V+P + +D +T F +NP+GRFVIGGP GDAGLTGRKII+DTYGG+
Sbjct:  181 QVTVEY-DENGK--PVRVDTIVISTQHHPDVTWEEIDRDLKEHVIKAVVPAELIDGETKFFINPTGRFVIGGPQGDAGLTGRKIIVDTYGGY 269

BLAST of CF417784 vs. ExPASy Swiss-Prot
Match: METK_BACC0 (S-adenosylmethionine synthetase OS=Bacillus cereus (strain AH820) GN=metK PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.217e-54
Identity = 58/107 (54.21%), Postives = 79/107 (73.83%), Query Frame = 2

Query:  284 HGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHF 604
            HGGGAFSGKD TKVDRS AY  R  AK+IVA GLA +  VQ++YAIGV +P+S+ VD++GTGK+ +  ++++V+ +FD RP  +   LDL+R     + +TAAYGHF
Sbjct:  272 HGGGAFSGKDATKVDRSAAYAARYVAKNIVAAGLAEKAEVQLAYAIGVAQPVSISVDTFGTGKVSEDVLVELVRNNFDLRPAGIIKMLDLRR---PIYKQTAAYGHF 375

HSP 2 Score: 115.161 bits (287), Expect = 2.217e-54
Identity = 59/92 (64.13%), Postives = 72/92 (78.26%), Query Frame = 1

Query:    1 QVTVEYYNDNGAMVPVRGHXVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGW 276
            QVTVEY ++NG   PVR   ++ISTQH   VT +EI  DLKEHVIK V+P + +D +T F +NP+GRFVIGGP GDAGLTGRKII+DTYGG+
Sbjct:  181 QVTVEY-DENGK--PVRVDTIVISTQHHPDVTWEEIDRDLKEHVIKAVVPAELIDGETKFFINPTGRFVIGGPQGDAGLTGRKIIVDTYGGY 269

BLAST of CF417784 vs. ExPASy Swiss-Prot
Match: METK_BACAN (S-adenosylmethionine synthetase OS=Bacillus anthracis GN=metK PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.217e-54
Identity = 58/107 (54.21%), Postives = 79/107 (73.83%), Query Frame = 2

Query:  284 HGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHF 604
            HGGGAFSGKD TKVDRS AY  R  AK+IVA GLA +  VQ++YAIGV +P+S+ VD++GTGK+ +  ++++V+ +FD RP  +   LDL+R     + +TAAYGHF
Sbjct:  272 HGGGAFSGKDATKVDRSAAYAARYVAKNIVAAGLAEKAEVQLAYAIGVAQPVSISVDTFGTGKVSEDVLVELVRNNFDLRPAGIIKMLDLRR---PIYKQTAAYGHF 375

HSP 2 Score: 115.161 bits (287), Expect = 2.217e-54
Identity = 59/92 (64.13%), Postives = 72/92 (78.26%), Query Frame = 1

Query:    1 QVTVEYYNDNGAMVPVRGHXVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGW 276
            QVTVEY ++NG   PVR   ++ISTQH   VT +EI  DLKEHVIK V+P + +D +T F +NP+GRFVIGGP GDAGLTGRKII+DTYGG+
Sbjct:  181 QVTVEY-DENGK--PVRVDTIVISTQHHPDVTWEEIDRDLKEHVIKAVVPAELIDGETKFFINPTGRFVIGGPQGDAGLTGRKIIVDTYGGY 269

BLAST of CF417784 vs. ExPASy Swiss-Prot
Match: METK_BACAH (S-adenosylmethionine synthetase OS=Bacillus thuringiensis (strain Al Hakam) GN=metK PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.217e-54
Identity = 58/107 (54.21%), Postives = 79/107 (73.83%), Query Frame = 2

Query:  284 HGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHF 604
            HGGGAFSGKD TKVDRS AY  R  AK+IVA GLA +  VQ++YAIGV +P+S+ VD++GTGK+ +  ++++V+ +FD RP  +   LDL+R     + +TAAYGHF
Sbjct:  272 HGGGAFSGKDATKVDRSAAYAARYVAKNIVAAGLAEKAEVQLAYAIGVAQPVSISVDTFGTGKVSEDVLVELVRNNFDLRPAGIIKMLDLRR---PIYKQTAAYGHF 375

HSP 2 Score: 115.161 bits (287), Expect = 2.217e-54
Identity = 59/92 (64.13%), Postives = 72/92 (78.26%), Query Frame = 1

Query:    1 QVTVEYYNDNGAMVPVRGHXVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGW 276
            QVTVEY ++NG   PVR   ++ISTQH   VT +EI  DLKEHVIK V+P + +D +T F +NP+GRFVIGGP GDAGLTGRKII+DTYGG+
Sbjct:  181 QVTVEY-DENGK--PVRVDTIVISTQHHPDVTWEEIDRDLKEHVIKAVVPAELIDGETKFFINPTGRFVIGGPQGDAGLTGRKIIVDTYGGY 269

BLAST of CF417784 vs. ExPASy Swiss-Prot
Match: METK_BACAC (S-adenosylmethionine synthetase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=metK PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.217e-54
Identity = 58/107 (54.21%), Postives = 79/107 (73.83%), Query Frame = 2

Query:  284 HGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHF 604
            HGGGAFSGKD TKVDRS AY  R  AK+IVA GLA +  VQ++YAIGV +P+S+ VD++GTGK+ +  ++++V+ +FD RP  +   LDL+R     + +TAAYGHF
Sbjct:  272 HGGGAFSGKDATKVDRSAAYAARYVAKNIVAAGLAEKAEVQLAYAIGVAQPVSISVDTFGTGKVSEDVLVELVRNNFDLRPAGIIKMLDLRR---PIYKQTAAYGHF 375

HSP 2 Score: 115.161 bits (287), Expect = 2.217e-54
Identity = 59/92 (64.13%), Postives = 72/92 (78.26%), Query Frame = 1

Query:    1 QVTVEYYNDNGAMVPVRGHXVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGW 276
            QVTVEY ++NG   PVR   ++ISTQH   VT +EI  DLKEHVIK V+P + +D +T F +NP+GRFVIGGP GDAGLTGRKII+DTYGG+
Sbjct:  181 QVTVEY-DENGK--PVRVDTIVISTQHHPDVTWEEIDRDLKEHVIKAVVPAELIDGETKFFINPTGRFVIGGPQGDAGLTGRKIIVDTYGGY 269

BLAST of CF417784 vs. ExPASy Swiss-Prot
Match: METK_BACAA (S-adenosylmethionine synthetase OS=Bacillus anthracis (strain A0248) GN=metK PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.217e-54
Identity = 58/107 (54.21%), Postives = 79/107 (73.83%), Query Frame = 2

Query:  284 HGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHF 604
            HGGGAFSGKD TKVDRS AY  R  AK+IVA GLA +  VQ++YAIGV +P+S+ VD++GTGK+ +  ++++V+ +FD RP  +   LDL+R     + +TAAYGHF
Sbjct:  272 HGGGAFSGKDATKVDRSAAYAARYVAKNIVAAGLAEKAEVQLAYAIGVAQPVSISVDTFGTGKVSEDVLVELVRNNFDLRPAGIIKMLDLRR---PIYKQTAAYGHF 375

HSP 2 Score: 115.161 bits (287), Expect = 2.217e-54
Identity = 59/92 (64.13%), Postives = 72/92 (78.26%), Query Frame = 1

Query:    1 QVTVEYYNDNGAMVPVRGHXVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGW 276
            QVTVEY ++NG   PVR   ++ISTQH   VT +EI  DLKEHVIK V+P + +D +T F +NP+GRFVIGGP GDAGLTGRKII+DTYGG+
Sbjct:  181 QVTVEY-DENGK--PVRVDTIVISTQHHPDVTWEEIDRDLKEHVIKAVVPAELIDGETKFFINPTGRFVIGGPQGDAGLTGRKIIVDTYGGY 269

BLAST of CF417784 vs. ExPASy Swiss-Prot
Match: METK_BACLD (S-adenosylmethionine synthetase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=metK PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.890e-54
Identity = 58/107 (54.21%), Postives = 80/107 (74.77%), Query Frame = 2

Query:  284 HGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHF 604
            HGGGAFSGKD TKVDRS AY  R  AK+IVA GLA  C VQ++YAIGV +P+S+ +D++GTGK  ++ ++++V+++FD RP  +   LDL+R     + +TAAYGHF
Sbjct:  272 HGGGAFSGKDATKVDRSAAYAARYVAKNIVAAGLADSCEVQLAYAIGVAQPVSISIDTFGTGKASEETLIEVVRKNFDLRPAGIIKMLDLRR---PIYKQTAAYGHF 375

HSP 2 Score: 112.849 bits (281), Expect = 2.890e-54
Identity = 53/92 (57.61%), Postives = 71/92 (77.17%), Query Frame = 1

Query:    1 QVTVEYYNDNGAMVPVRGHXVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGW 276
            QVTVEY  +N    P+R   ++ISTQH   ++ ++I  +LKEHVI PV+P++ +DE T + +NP+GRFVIGGP GDAGLTGRKII+DTYGG+
Sbjct:  181 QVTVEYDENNK---PIRIDTIVISTQHHPEISLEQIQRNLKEHVINPVVPKELIDENTKYFINPTGRFVIGGPQGDAGLTGRKIIVDTYGGY 269

The following BLAST results are available for this feature:

BLAST of CF417784 vs. ExPASy Swiss-Prot

BLAST of CF417784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
METK_BACC7	2.217e-54	54.21	S-adenosylmethionine synthetase OS=Bacillus cereus...	[more]
METK_BACC4	2.217e-54	54.21	S-adenosylmethionine synthetase OS=Bacillus cereus...	[more]
METK_BACC3	2.217e-54	54.21	S-adenosylmethionine synthetase OS=Bacillus cereus...	[more]
METK_BACC1	2.217e-54	54.21	S-adenosylmethionine synthetase OS=Bacillus cereus...	[more]
METK_BACC0	2.217e-54	54.21	S-adenosylmethionine synthetase OS=Bacillus cereus...	[more]
METK_BACAN	2.217e-54	54.21	S-adenosylmethionine synthetase OS=Bacillus anthra...	[more]
METK_BACAH	2.217e-54	54.21	S-adenosylmethionine synthetase OS=Bacillus thurin...	[more]
METK_BACAC	2.217e-54	54.21	S-adenosylmethionine synthetase OS=Bacillus anthra...	[more]
METK_BACAA	2.217e-54	54.21	S-adenosylmethionine synthetase OS=Bacillus anthra...	[more]
METK_BACLD	2.890e-54	54.21	S-adenosylmethionine synthetase OS=Bacillus lichen...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_115000-714 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_B05 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417784 ID=CF417784; Name=CF417784; organism=Citrus sinensis; type=EST; length=651bp
CAGGTCACTGTTGAGTACTACAATGACAATGGTGCCATGGTCCCAGTCCG
NGGCCACANGGTCCTCATTTCAACCCAGCATGATGAGACTGTCACAAATG
ATGAAATTGCTGCTGACCTTAAGGAGCACGTCATTAAGCCTGTCATCCCC
GAGAAGTACCTTGATGAGAAGACCATCTTCCACCTTAATCCATCAGGTCG
TTTTGTCATTGGTGGGCCTCATGGTGATGCTGGTCTCACTGGACGTAAGA
TCATCATCGACACTTATGGTGGCTGGGGAGCCCCATGGTGGCGGTGCTTT
CTCTGGAAAAGACCCTACTAAGGTGGATAGGAGTGGTGCATACATTGTTA
GGCAGGCTGCTAAGAGCATTGTTGCAAACGGGCTTGCTCGCAGGTGCATT
GTCCAAGTCTCCTATGCCATTGGTGTGCCTGAGCCATTGTCTGTTTTTGT
GGACTCATATGGAACCGGCAAGATTCCTGACAAGGAGATCCTCAAAATTG
TGAAGGAAAGCTTTGATTTCAGGCCAGGAATGATGACCATCAATTTGGAT
CTCAAAAGGGGCGGTAATGGCAGGTTCTTGAAGACTGCTGCCTATGGACA
CTTTTGGCAGGGATGACCCAGACTTCACTTGGGGAAGTTGTGAAGCCCCT
C