CF417792

Overview
NameCF417792
Unique NameCF417792
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length536
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417792 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 2.746e-78
Identity = 139/169 (82.25%), Postives = 146/169 (86.39%), Query Frame = 2
Query:   35 GRISMRKTGSKS--VSSXSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGXPSLIHAQXILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPL 535
            GRI+MRKT +K     S SPWYG DRV YLGPLSG PPSYLTGEFPGDYGWDT GLSADPETFAKNRELEVIHCRWA+   LGCVFPELLARNGVKFGE VWFKAG+QIFSEGGL + G PSL+HAQ ILAIWACQVVLMGAVEGY +AGG LGEV DPLY GGSFDPL
Sbjct:   28 GRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPL 196          
BLAST of CF417792 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 5.179e-77
Identity = 133/167 (79.64%), Postives = 147/167 (88.02%), Query Frame = 2
Query:   35 GRISMRKTGSKSVSSXSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGXPSLIHAQXILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPL 535
            GRI+MR+T   +  S   WYG DR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLG P+L+HAQ ILAIWACQVVLMG VEGYR+ GGPLGE  D +YPGG+FDPL
Sbjct:   33 GRITMRRTVKSAPQSI--WYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPL 197          
BLAST of CF417792 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 1.507e-76
Identity = 134/168 (79.76%), Postives = 147/168 (87.50%), Query Frame = 2
Query:   32 GGRISMRKTGSKSVSSXSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGXPSLIHAQXILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPL 535
            GGRI+MR+T   +  S   WYGPDR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLG P+L+HAQ ILAIWA QVVLMG VEGYR+ GGPLGE  D +YPGG+FDPL
Sbjct:   30 GGRITMRRTVKSAPQSI--WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPL 195          
BLAST of CF417792 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 1.507e-76
Identity = 134/168 (79.76%), Postives = 147/168 (87.50%), Query Frame = 2
Query:   32 GGRISMRKTGSKSVSSXSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGXPSLIHAQXILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPL 535
            GGRI+MR+T   +  S   WYGPDR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLG P+L+HAQ ILAIWA QVVLMG VEGYR+ GGPLGE  D +YPGG+FDPL
Sbjct:   30 GGRITMRRTVKSAPQSI--WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPL 195          
BLAST of CF417792 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 5.726e-76
Identity = 131/168 (77.98%), Postives = 146/168 (86.90%), Query Frame = 2
Query:   32 GGRISMRKTGSKSVSSXSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGXPSLIHAQXILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPL 535
            GGR +MR+T   +  S   WYG DR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLG P+LIHAQ ILA+WA QVVLMG +EGYR+ GGPLGE  D +YPGG+FDPL
Sbjct:   32 GGRATMRRTVKSAPQSI--WYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPL 197          
BLAST of CF417792 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 7.478e-76
Identity = 132/168 (78.57%), Postives = 146/168 (86.90%), Query Frame = 2
Query:   32 GGRISMRKTGSKSVSSXSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGXPSLIHAQXILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPL 535
            GGR++MR+T   +  S   WYG DR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKAG+QIFSEGGLDYLG P+LIHAQ ILAIWA QVVLMG VEGYR+ GGPLGE  D +YPGG+FDPL
Sbjct:    4 GGRVTMRRTVKSAPQSI--WYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPL 169          
BLAST of CF417792 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 1.666e-75
Identity = 132/168 (78.57%), Postives = 145/168 (86.31%), Query Frame = 2
Query:   32 GGRISMRKTGSKSVSSXSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGXPSLIHAQXILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPL 535
            GGR +MR+T   +  S   WYG DR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKAG+QIFSEGGLDYLG P+LIHAQ ILAIWA QVVLMG VEGYR+ GGPLGE  D +YPGG+FDPL
Sbjct:   32 GGRATMRRTVKSAPQSI--WYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPL 197          
BLAST of CF417792 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 2.176e-75
Identity = 133/166 (80.12%), Postives = 143/166 (86.14%), Query Frame = 2
Query:   38 RISMRKTGSKSVSSXSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGXPSLIHAQXILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPL 535
            RI+MR+T   +  S   WYGPDR KYLGP S   PSYLTGEFPGDYGWDTA +SADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NG+KFGEAVWFKAGAQIFSEGGLDY G P+LIHAQ ILAIWACQVVLMG +EGYR+ GG LGE  DPL PGG+FDPL
Sbjct:   35 RITMRRTVRSAPESI--WYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPL 198          
BLAST of CF417792 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 2.176e-75
Identity = 134/167 (80.24%), Postives = 147/167 (88.02%), Query Frame = 2
Query:   35 GRISMRKTGSKSVSSXSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGXPSLIHAQXILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPL 535
            GR SMR+T  K+V   S WYG DR K+LGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC+FPELL++NGV+FGEAVWFKAGAQIFSEGGLDYLG P+L+HAQ ILAIWA QVVLMG +EGYR+ GGPLGE  DPLYPGG+FDPL
Sbjct:   32 GRFSMRRT-VKAVPQ-SIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPL 196          
BLAST of CF417792 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 1.080e-74
Identity = 132/166 (79.52%), Postives = 143/166 (86.14%), Query Frame = 2
Query:   38 RISMRKTGSKSVSSXSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGXPSLIHAQXILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPL 535
            R +MR+T   +  S   WYGPDR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGC FPELL +NGVKFGEAVWFKAG+QIF+EGGLDYLG P+LIHAQ ILAIWA QVVLMG VEGYR+ GGPLGE  DPLYPGG+FDPL
Sbjct:   34 RFTMRRTVKSAPESI--WYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPL 197          
The following BLAST results are available for this feature:
BLAST of CF417792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB48_MAIZE2.746e-7882.25Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB24_SOLLC5.179e-7779.64Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_ORYSJ1.507e-7679.76Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.507e-7679.76Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_TOBAC5.726e-7677.98Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB25_SOLLC7.478e-7678.57Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB26_PETSP1.666e-7578.57Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB21_PINTH2.176e-7580.12Chlorophyll a-b binding protein type I, chloroplas... [more]
CB21_LEMGI2.176e-7580.24Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB215_PEA1.080e-7479.52Chlorophyll a-b binding protein 215, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-722 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417792 ID=CF417792; Name=CF417792; organism=Citrus sinensis; type=EST; length=536bp
CTCGCCCCTTCAGGCAATGAGTCTGAGCANTGGTGGCCGCATCTCCATGC
GTAAAACCGGGAGCAAGTCTGTTTCTTCANGTAGCCCGTGGTACGGCCCG
GACAGAGTCAAGTACTTGGGCCCACTCTCTGGCGAGCCCCCAAGCTACTT
GACTGGTGAGTTCCCTGGCGACTACGGTTGGGACACTGCCGGGCTTTCAG
CTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGC
AGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGC
CCGCAACGGAGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCGGGAGCTC
AGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGAAANCCAAGCTTGATC
CACGCCCAGANCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGG
AGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTG
ACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGG
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