CF417792
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417792 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1) HSP 1 Score: 290.812 bits (743), Expect = 2.746e-78 Identity = 139/169 (82.25%), Postives = 146/169 (86.39%), Query Frame = 2 Query: 35 GRISMRKTGSKS--VSSXSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGXPSLIHAQXILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPL 535 GRI+MRKT +K S SPWYG DRV YLGPLSG PPSYLTGEFPGDYGWDT GLSADPETFAKNRELEVIHCRWA+ LGCVFPELLARNGVKFGE VWFKAG+QIFSEGGL + G PSL+HAQ ILAIWACQVVLMGAVEGY +AGG LGEV DPLY GGSFDPL Sbjct: 28 GRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPL 196
BLAST of CF417792 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1) HSP 1 Score: 286.574 bits (732), Expect = 5.179e-77 Identity = 133/167 (79.64%), Postives = 147/167 (88.02%), Query Frame = 2 Query: 35 GRISMRKTGSKSVSSXSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGXPSLIHAQXILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPL 535 GRI+MR+T + S WYG DR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLG P+L+HAQ ILAIWACQVVLMG VEGYR+ GGPLGE D +YPGG+FDPL Sbjct: 33 GRITMRRTVKSAPQSI--WYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPL 197
BLAST of CF417792 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1) HSP 1 Score: 285.034 bits (728), Expect = 1.507e-76 Identity = 134/168 (79.76%), Postives = 147/168 (87.50%), Query Frame = 2 Query: 32 GGRISMRKTGSKSVSSXSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGXPSLIHAQXILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPL 535 GGRI+MR+T + S WYGPDR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLG P+L+HAQ ILAIWA QVVLMG VEGYR+ GGPLGE D +YPGG+FDPL Sbjct: 30 GGRITMRRTVKSAPQSI--WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPL 195
BLAST of CF417792 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1) HSP 1 Score: 285.034 bits (728), Expect = 1.507e-76 Identity = 134/168 (79.76%), Postives = 147/168 (87.50%), Query Frame = 2 Query: 32 GGRISMRKTGSKSVSSXSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGXPSLIHAQXILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPL 535 GGRI+MR+T + S WYGPDR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLG P+L+HAQ ILAIWA QVVLMG VEGYR+ GGPLGE D +YPGG+FDPL Sbjct: 30 GGRITMRRTVKSAPQSI--WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPL 195
BLAST of CF417792 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1) HSP 1 Score: 283.108 bits (723), Expect = 5.726e-76 Identity = 131/168 (77.98%), Postives = 146/168 (86.90%), Query Frame = 2 Query: 32 GGRISMRKTGSKSVSSXSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGXPSLIHAQXILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPL 535 GGR +MR+T + S WYG DR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLG P+LIHAQ ILA+WA QVVLMG +EGYR+ GGPLGE D +YPGG+FDPL Sbjct: 32 GGRATMRRTVKSAPQSI--WYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPL 197
BLAST of CF417792 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1) HSP 1 Score: 282.722 bits (722), Expect = 7.478e-76 Identity = 132/168 (78.57%), Postives = 146/168 (86.90%), Query Frame = 2 Query: 32 GGRISMRKTGSKSVSSXSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGXPSLIHAQXILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPL 535 GGR++MR+T + S WYG DR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKAG+QIFSEGGLDYLG P+LIHAQ ILAIWA QVVLMG VEGYR+ GGPLGE D +YPGG+FDPL Sbjct: 4 GGRVTMRRTVKSAPQSI--WYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPL 169
BLAST of CF417792 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1) HSP 1 Score: 281.567 bits (719), Expect = 1.666e-75 Identity = 132/168 (78.57%), Postives = 145/168 (86.31%), Query Frame = 2 Query: 32 GGRISMRKTGSKSVSSXSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGXPSLIHAQXILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPL 535 GGR +MR+T + S WYG DR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKAG+QIFSEGGLDYLG P+LIHAQ ILAIWA QVVLMG VEGYR+ GGPLGE D +YPGG+FDPL Sbjct: 32 GGRATMRRTVKSAPQSI--WYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPL 197
BLAST of CF417792 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1) HSP 1 Score: 281.182 bits (718), Expect = 2.176e-75 Identity = 133/166 (80.12%), Postives = 143/166 (86.14%), Query Frame = 2 Query: 38 RISMRKTGSKSVSSXSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGXPSLIHAQXILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPL 535 RI+MR+T + S WYGPDR KYLGP S PSYLTGEFPGDYGWDTA +SADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NG+KFGEAVWFKAGAQIFSEGGLDY G P+LIHAQ ILAIWACQVVLMG +EGYR+ GG LGE DPL PGG+FDPL Sbjct: 35 RITMRRTVRSAPESI--WYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPL 198
BLAST of CF417792 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1) HSP 1 Score: 281.182 bits (718), Expect = 2.176e-75 Identity = 134/167 (80.24%), Postives = 147/167 (88.02%), Query Frame = 2 Query: 35 GRISMRKTGSKSVSSXSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGXPSLIHAQXILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPL 535 GR SMR+T K+V S WYG DR K+LGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC+FPELL++NGV+FGEAVWFKAGAQIFSEGGLDYLG P+L+HAQ ILAIWA QVVLMG +EGYR+ GGPLGE DPLYPGG+FDPL Sbjct: 32 GRFSMRRT-VKAVPQ-SIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPL 196
BLAST of CF417792 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1) HSP 1 Score: 278.87 bits (712), Expect = 1.080e-74 Identity = 132/166 (79.52%), Postives = 143/166 (86.14%), Query Frame = 2 Query: 38 RISMRKTGSKSVSSXSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGXPSLIHAQXILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPL 535 R +MR+T + S WYGPDR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGC FPELL +NGVKFGEAVWFKAG+QIF+EGGLDYLG P+LIHAQ ILAIWA QVVLMG VEGYR+ GGPLGE DPLYPGG+FDPL Sbjct: 34 RFTMRRTVKSAPESI--WYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPL 197 The following BLAST results are available for this feature:
BLAST of CF417792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 72
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417792 ID=CF417792; Name=CF417792; organism=Citrus sinensis; type=EST; length=536bpback to top |