CF417792

Overview
NameCF417792
Unique NameCF417792
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length536
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417792 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.175e-12
Identity = 49/137 (35.77%), Postives = 67/137 (48.91%), Query Frame = 2
Query:  131 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGXPSLIHAQXILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPL 535
            G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLG P  +    +  I A + + +   E  R       +     YPGG+FDPL
Sbjct:   51 GQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTME---KDPEKKKYPGGAFDPL 175          
BLAST of CF417792 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.423e-11
Identity = 30/74 (40.54%), Postives = 45/74 (60.81%), Query Frame = 2
Query:  134 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQI 355
            +PP++LTGE+P D G+D   ++ADP  +A+ R  EV H R +ML  +G + PELL       G+  WF+ G  +
Sbjct:  167 QPPAHLTGEYPADRGFDPLSVAADPTVYARMRVSEVFHARLSMLAIVGSIVPELL-------GKGAWFEVGNSV 233          
The following BLAST results are available for this feature:
BLAST of CF417792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB121_HORVU1.175e-1235.77Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
LH15_EUGGR8.423e-1140.54Light-harvesting complex I LH35 proteins (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-722 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417792 ID=CF417792; Name=CF417792; organism=Citrus sinensis; type=EST; length=536bp
CTCGCCCCTTCAGGCAATGAGTCTGAGCANTGGTGGCCGCATCTCCATGC
GTAAAACCGGGAGCAAGTCTGTTTCTTCANGTAGCCCGTGGTACGGCCCG
GACAGAGTCAAGTACTTGGGCCCACTCTCTGGCGAGCCCCCAAGCTACTT
GACTGGTGAGTTCCCTGGCGACTACGGTTGGGACACTGCCGGGCTTTCAG
CTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGC
AGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGC
CCGCAACGGAGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCGGGAGCTC
AGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGAAANCCAAGCTTGATC
CACGCCCAGANCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGG
AGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTG
ACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGG
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