CF417793

Overview
NameCF417793
Unique NameCF417793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA13_NAEGR (Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUBA13 PE=2 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 3.088e-95
Identity = 167/175 (95.43%), Postives = 171/175 (97.71%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            ISSLTASLRFDGALN DVTEF TNLVPYPRIHFML SYAPVISAEKA+HEQLSVAEITNSAFEP+SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDW PTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNST++AEVFSRIDHKFDLMYAKRAFVHWYV
Sbjct:  235 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLCSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWSPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA_EUGGR (Tubulin alpha chain OS=Euglena gracilis GN=TUBA PE=2 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 6.880e-95
Identity = 162/175 (92.57%), Postives = 173/175 (98.86%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            ISSLTASLRFDGALN D+TEF TNLVPYPRIHF+LSSYAP+ISAEKA+HEQLSVAEITN+AFEP+SMMAKCDPRHGKYMACCLMYRGDVVPKDVNA+VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNST++AEVF+RIDHKFDLMY+KRAFVHWYV
Sbjct:  235 ISSLTASLRFDGALNVDITEFQTNLVPYPRIHFVLSSYAPIISAEKAYHEQLSVAEITNAAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNASVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFARIDHKFDLMYSKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA_DAUCA (Tubulin alpha chain OS=Daucus carota GN=TBA PE=2 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 6.880e-95
Identity = 168/175 (96.00%), Postives = 170/175 (97.14%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            ISSLTASLRFDGALN DVTEF TNLVPYPRIHFMLSSYAPVISAEKA+HEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAV TIKTKRTIQFVDWCPTGFKCGINYQ PTVVPGGDLAKVQRAVCMISNSTSVAEVFSRID KFDLMY+KRAFVHWYV
Sbjct:  235 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQAPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDTKFDLMYSKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA1_CHLRE (Tubulin alpha-1 chain OS=Chlamydomonas reinhardtii GN=TUBA1 PE=1 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 8.986e-95
Identity = 161/175 (92.00%), Postives = 171/175 (97.71%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            ISSLTASLRFDGALN D+TEF TNLVPYPRIHFMLSSYAP+ISAEKA+HEQLSVAEITN+AFEP+SMM KCDPRHGKYMACCLMYRGDVVPKDVNA+VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNST++ E+FSR+DHKFDLMYAKRAFVHWYV
Sbjct:  235 ISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNAAFEPASMMVKCDPRHGKYMACCLMYRGDVVPKDVNASVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIGEIFSRLDHKFDLMYAKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA_EUPOC (Tubulin alpha chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 345.125 bits (884), Expect = 1.174e-94
Identity = 165/175 (94.29%), Postives = 171/175 (97.71%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            ISSLTASLRFDGALN DVTEF TNLVPYPRIHFMLSSYAPVISAEKA+HEQLSVAEITNS+FEP+SMMAKCDPRHGKYMACC+MYRGDVVPKDVNAAVATIKTKRTIQFVDW PTGFKCGINYQPPTVVPGGDLAKV RAVCMISNST++AEVFSRIDHKFDLMYAKRAFVHWYV
Sbjct:  235 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSSFEPASMMAKCDPRHGKYMACCMMYRGDVVPKDVNAAVATIKTKRTIQFVDWSPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA2_ORYSJ (Tubulin alpha-2 chain OS=Oryza sativa subsp. japonica GN=TUBA PE=2 SV=1)

HSP 1 Score: 345.125 bits (884), Expect = 1.174e-94
Identity = 167/175 (95.43%), Postives = 170/175 (97.14%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            ISSLTASLRFDGALN DV EF TNLVPYPRIHFMLSSYAPVISAEKA+HEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISNSTSV EVFSRID KFDLMY+KRAFVHWYV
Sbjct:  235 ISSLTASLRFDGALNVDVNEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDIKFDLMYSKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA6_MAIZE (Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 2.002e-94
Identity = 163/175 (93.14%), Postives = 170/175 (97.14%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            ISSLT SLRFDGA+N DVTEF TNLVPYPRIHFMLSSYAPVISAEKA+HEQLSV EITN+ FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRT+QFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISN+T+VAEVFSRIDHKFDLMYAKRAFVHWYV
Sbjct:  235 ISSLTTSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA5_MAIZE (Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 2.002e-94
Identity = 163/175 (93.14%), Postives = 170/175 (97.14%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            ISSLT SLRFDGA+N DVTEF TNLVPYPRIHFMLSSYAPVISAEKA+HEQLSV EITN+ FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRT+QFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISN+T+VAEVFSRIDHKFDLMYAKRAFVHWYV
Sbjct:  235 ISSLTTSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA3_ELEIN (Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 2.002e-94
Identity = 163/175 (93.14%), Postives = 170/175 (97.14%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            ISSLT SLRFDGA+N DVTEF TNLVPYPRIHFMLSSYAPVISAEKA+HEQLSV EITN+ FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRT+QFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISN+T+VAEVFSRIDHKFDLMYAKRAFVHWYV
Sbjct:  235 ISSLTTSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA1_ORYSJ (Tubulin alpha-1 chain OS=Oryza sativa subsp. japonica GN=TUBA1 PE=1 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 2.002e-94
Identity = 163/175 (93.14%), Postives = 170/175 (97.14%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            ISSLT SLRFDGA+N DVTEF TNLVPYPRIHFMLSSYAPVISAEKA+HEQLSV EITN+ FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRT+QFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISN+T+VAEVFSRIDHKFDLMYAKRAFVHWYV
Sbjct:  235 ISSLTTSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYV 409
The following BLAST results are available for this feature:
BLAST of CF417793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
TBA13_NAEGR3.088e-9595.43Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUB... [more]
TBA_EUGGR6.880e-9592.57Tubulin alpha chain OS=Euglena gracilis GN=TUBA PE... [more]
TBA_DAUCA6.880e-9596.00Tubulin alpha chain OS=Daucus carota GN=TBA PE=2 S... [more]
TBA1_CHLRE8.986e-9592.00Tubulin alpha-1 chain OS=Chlamydomonas reinhardtii... [more]
TBA_EUPOC1.174e-9494.29Tubulin alpha chain OS=Euplotes octocarinatus PE=3... [more]
TBA2_ORYSJ1.174e-9495.43Tubulin alpha-2 chain OS=Oryza sativa subsp. japon... [more]
TBA6_MAIZE2.002e-9493.14Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV... [more]
TBA5_MAIZE2.002e-9493.14Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV... [more]
TBA3_ELEIN2.002e-9493.14Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 ... [more]
TBA1_ORYSJ2.002e-9493.14Tubulin alpha-1 chain OS=Oryza sativa subsp. japon... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-723 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417793 ID=CF417793; Name=CF417793; organism=Citrus sinensis; type=EST; length=529bp
TGATCTCATCCCTTACTGCTTCTTTGAGGTTTGATGGAGCTCTGAATGNG
GATGTGACTGAGTTCCANACCAATTTGGTTCCCTATCCAAGGATCCATTT
CATGCTCTCCTCTTATGCCCCAGTTATCTCTGCTGAGAAGGCATTCCATG
AGCAACTTTCAGTTGCTGAGATCACCAACAGTGCTTTTGAGCCATCATCC
ATGATGGCCAAATGTGACCCTCGTCATGGCAAGTACATGGCCTGCTGCTT
GATGTATCGTGGTGATGTTGTGCCTAAGGATGTGAATGCAGCTGTGGCCA
CCATCAAGACCAAGCGCACAATTCAGTTTGTTGACTGGTGCCCTACTGGA
TTCAAGTGCGGTATCAACTATCAGCCACCAACTGTGGTCCCTGGTGGTGA
CCTTGCCAAGGTGCAGAGGGCTGTCTGCATGATTTCCAACTCCACCAGCG
TTGCTGAAGTGTTTTCTCGCATTGATCACAAGTTTGACCTAATGTATGCC
AAGCGTGCTTTTGTGCACTGGTATGTTGG
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