CF417793 | Citrus Genome Database

Overview


Name	CF417793
Unique Name	CF417793
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	529

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA_AVESA (Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 1.435e-92
Identity = 161/175 (92.00%), Postives = 168/175 (96.00%), Query Frame = 3

Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            ISSLT SLRFDGA+N DVTEF TNLVPYPRIHFMLSSYAPVISAEKA+HEQLSV EITN+ FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAV TIKTKRT+QFVD CPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISN+T+VAEVFSRIDHKFDLMYAKRAFVHWYV
Sbjct:  235 ISSLTTSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVVTIKTKRTVQFVDXCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYV 409

[Close]

BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA1_PELFA (Tubulin alpha-1 chain OS=Pelvetia fastigiata GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 2.447e-92
Identity = 157/175 (89.71%), Postives = 167/175 (95.43%), Query Frame = 3

Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            ISSLTASLRFDGALN DVTEF TNLVPYPRIHFML+SYAP+ISAEKA+HEQLSVAEITNS FEP+ MM KCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPT VPGGDLA+VQRAVCM++N+T++AE  SRIDHKFDLMYAKRAFVHWYV
Sbjct:  235 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLTSYAPIISAEKAYHEQLSVAEITNSVFEPAGMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTAVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYV 409

[Close]

BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA2_PELFA (Tubulin alpha-2 chain OS=Pelvetia fastigiata GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 3.196e-92
Identity = 157/175 (89.71%), Postives = 167/175 (95.43%), Query Frame = 3

Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            ISSLTASLRFDGALN DVTEF TNLVPYPRIHFML+SYAP+ISAEKA+HEQLSVAEITNS FEP+ MM  CDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLA+VQRAVCM++N+T++AE  SRIDHKFDLMYAKRAFVHWYV
Sbjct:  235 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLTSYAPIISAEKAYHEQLSVAEITNSVFEPAGMMTNCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYV 409

[Close]

BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBAN_PHYPO (Tubulin alpha-1B chain OS=Physarum polycephalum GN=ALTBN PE=2 SV=2)

HSP 1 Score: 335.495 bits (859), Expect = 9.299e-92
Identity = 158/175 (90.29%), Postives = 167/175 (95.43%), Query Frame = 3

Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            ISSLT SLRFDGALN D+ EF TNLVPYPRIHFML+SYAPVISAEKAFHEQLSVAE+TN+ FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDV AAVA IKTKRTIQFVDWCPTGFKCGINYQ P+VVPGGDLAKVQRA+CMISN+T++AEVFSRIDHKFDLMYAKRAFVHWYV
Sbjct:  235 ISSLTTSLRFDGALNVDINEFQTNLVPYPRIHFMLASYAPVISAEKAFHEQLSVAELTNTVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVTAAVAVIKTKRTIQFVDWCPTGFKCGINYQAPSVVPGGDLAKVQRALCMISNTTAIAEVFSRIDHKFDLMYAKRAFVHWYV 409

[Close]

BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA_TETPY (Tubulin alpha chain OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 1.214e-91
Identity = 158/175 (90.29%), Postives = 169/175 (96.57%), Query Frame = 3

Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            ISSLTASLRFDGALN D+TEF TNLVPYPRIHFMLSSYAP+ISAEKA+HEQLSVAEITNSAFEP++MMAKCDPRHGKYMAC +MYRGDVVPKDVNA++ATIKTKRTIQFVDWCPTGFK GINYQP TVVPGGDLAKV RAVCMISNST++AEVFSR+DHKFDLMYAKRAFVHWYV
Sbjct:  235 ISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACSMMYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPSTVVPGGDLAKVMRAVCMISNSTAIAEVFSRLDHKFDLMYAKRAFVHWYV 409

[Close]

BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA_TRYBR (Tubulin alpha chain OS=Trypanosoma brucei rhodesiense PE=3 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 2.072e-91
Identity = 156/175 (89.14%), Postives = 170/175 (97.14%), Query Frame = 3

Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            +SSLTASLRFDGALN D+TEF TNLVPYPRIHF+L+SYAPVISAEKA+HEQLSV+EI+N+ FEP+SMM KCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDW PTGFKCGINYQPPTVVPGGDLAKVQRAVCMI+NST++AEVF+RIDHKFDLMY+KRAFVHWYV
Sbjct:  235 VSSLTASLRFDGALNVDLTEFQTNLVPYPRIHFVLTSYAPVISAEKAYHEQLSVSEISNAVFEPASMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWSPTGFKCGINYQPPTVVPGGDLAKVQRAVCMIANSTAIAEVFARIDHKFDLMYSKRAFVHWYV 409

[Close]

BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA3_MAIZE (Tubulin alpha-3 chain OS=Zea mays GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 2.072e-91
Identity = 162/175 (92.57%), Postives = 166/175 (94.86%), Query Frame = 3

Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            ISSLTASLRFDGALN DV EF TNLVPYPRIHFMLSSYAPVIS+ KAFHEQLSVAEIT+SAFEP+SMM KCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQ PTVVPG DLAKVQRAVCMISNSTSV EVFSRI+ KFDLMYAKRAFVHWYV
Sbjct:  235 ISSLTASLRFDGALNVDVNEFQTNLVPYPRIHFMLSSYAPVISSAKAFHEQLSVAEITSSAFEPASMMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQAPTVVPGADLAKVQRAVCMISNSTSVVEVFSRINSKFDLMYAKRAFVHWYV 409

[Close]

BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA_TRYCR (Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 1.028e-90
Identity = 154/175 (88.00%), Postives = 170/175 (97.14%), Query Frame = 3

Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            +S+LTASLRFDGALN D+TEF TNLVPYPRIHF+L++YAPVISAEKA+HEQLSV+EI+N+ FEP+SMM KCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDW PTGFKCGINYQPPTVVPGGDLAKVQRAVCMI+NST++AEVF+RIDHKFDLMY+KRAFVHWYV
Sbjct:  235 VSALTASLRFDGALNVDLTEFQTNLVPYPRIHFVLTTYAPVISAEKAYHEQLSVSEISNAVFEPASMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWSPTGFKCGINYQPPTVVPGGDLAKVQRAVCMIANSTAIAEVFARIDHKFDLMYSKRAFVHWYV 409

[Close]

BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA_EUPVA (Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 1.754e-90
Identity = 160/175 (91.43%), Postives = 168/175 (96.00%), Query Frame = 3

Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            ISSLTASLRFDGALN D+TEF TNLVPYPRIHFMLSSY PVISAEKA+HEQLSVAEITNS+FEP+SMMAKCDPRHGKYMACC+M+RGDVVPKDVNAAVATIKTKRTIQFVDW P GFK GINYQPPTVVPGGDLAKV RAVCMISNST++AEVFSRIDHKFDLMYAKRAFVHWYV
Sbjct:  235 ISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYGPVISAEKAYHEQLSVAEITNSSFEPASMMAKCDPRHGKYMACCMMFRGDVVPKDVNAAVATIKTKRTIQFVDWSP-GFKVGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYV 408

[Close]

BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA2_ELEIN (Tubulin alpha-2 chain OS=Eleusine indica GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 2.991e-90
Identity = 156/175 (89.14%), Postives = 165/175 (94.29%), Query Frame = 3

Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            ISSLT SLRFDGA+N D+TEF TNLVPYPRIHFMLSSYAP+IS EKA+HEQ SV EITNS FE SS+MAKCDPRHGKYMACCLMYRGDVVPKDVNAAV +IKTKRT+QFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISN+T+VAEVFSRID KFDLMYAKRAFVHWYV
Sbjct:  235 ISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPIISVEKAYHEQHSVPEITNSVFESSSVMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVHSIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDRKFDLMYAKRAFVHWYV 409

The following BLAST results are available for this feature:

BLAST of CF417793 vs. ExPASy Swiss-Prot

BLAST of CF417793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412


Match Name	E-value	Identity	Description
TBA_AVESA	1.435e-92	92.00	Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 S...	[more]
TBA1_PELFA	2.447e-92	89.71	Tubulin alpha-1 chain OS=Pelvetia fastigiata GN=TU...	[more]
TBA2_PELFA	3.196e-92	89.71	Tubulin alpha-2 chain OS=Pelvetia fastigiata GN=TU...	[more]
TBAN_PHYPO	9.299e-92	90.29	Tubulin alpha-1B chain OS=Physarum polycephalum GN...	[more]
TBA_TETPY	1.214e-91	90.29	Tubulin alpha chain OS=Tetrahymena pyriformis PE=3...	[more]
TBA_TRYBR	2.072e-91	89.14	Tubulin alpha chain OS=Trypanosoma brucei rhodesie...	[more]
TBA3_MAIZE	2.072e-91	92.57	Tubulin alpha-3 chain OS=Zea mays GN=TUBA3 PE=2 SV...	[more]
TBA_TRYCR	1.028e-90	88.00	Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1	[more]
TBA_EUPVA	1.754e-90	91.43	Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1	[more]
TBA2_ELEIN	2.991e-90	89.14	Tubulin alpha-2 chain OS=Eleusine indica GN=TUBA2 ...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-723 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_C02 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417793 ID=CF417793; Name=CF417793; organism=Citrus sinensis; type=EST; length=529bp
TGATCTCATCCCTTACTGCTTCTTTGAGGTTTGATGGAGCTCTGAATGNG
GATGTGACTGAGTTCCANACCAATTTGGTTCCCTATCCAAGGATCCATTT
CATGCTCTCCTCTTATGCCCCAGTTATCTCTGCTGAGAAGGCATTCCATG
AGCAACTTTCAGTTGCTGAGATCACCAACAGTGCTTTTGAGCCATCATCC
ATGATGGCCAAATGTGACCCTCGTCATGGCAAGTACATGGCCTGCTGCTT
GATGTATCGTGGTGATGTTGTGCCTAAGGATGTGAATGCAGCTGTGGCCA
CCATCAAGACCAAGCGCACAATTCAGTTTGTTGACTGGTGCCCTACTGGA
TTCAAGTGCGGTATCAACTATCAGCCACCAACTGTGGTCCCTGGTGGTGA
CCTTGCCAAGGTGCAGAGGGCTGTCTGCATGATTTCCAACTCCACCAGCG
TTGCTGAAGTGTTTTCTCGCATTGATCACAAGTTTGACCTAATGTATGCC
AAGCGTGCTTTTGTGCACTGGTATGTTGG