CF417793

Overview
NameCF417793
Unique NameCF417793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA1B_HUMAN (Tubulin alpha-1B chain OS=Homo sapiens GN=TUBA1B PE=1 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 2.800e-88
Identity = 148/175 (84.57%), Postives = 167/175 (95.43%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            +SS+TASLRFDGALN D+TEF TNLVPYPRIHF L++YAPVISAEKA+HEQLSVAEITN+ FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKR+IQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYV
Sbjct:  235 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA1B_CRIGR (Tubulin alpha-1B chain OS=Cricetulus griseus GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 2.800e-88
Identity = 148/175 (84.57%), Postives = 167/175 (95.43%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            +SS+TASLRFDGALN D+TEF TNLVPYPRIHF L++YAPVISAEKA+HEQLSVAEITN+ FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKR+IQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYV
Sbjct:  235 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA1B_BOVIN (Tubulin alpha-1B chain OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 323.939 bits (829), Expect = 2.800e-88
Identity = 148/175 (84.57%), Postives = 167/175 (95.43%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            +SS+TASLRFDGALN D+TEF TNLVPYPRIHF L++YAPVISAEKA+HEQLSVAEITN+ FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKR+IQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYV
Sbjct:  235 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA_BOMMO (Tubulin alpha chain OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 3.657e-88
Identity = 148/175 (84.57%), Postives = 166/175 (94.86%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            +SS+TASLRFDGALN D+TEF TNLVPYPRIHF L +YAPVISAEKA+HEQLSVAEITN+ FEP++ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYV
Sbjct:  235 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA1_DROME (Tubulin alpha-1 chain OS=Drosophila melanogaster GN=alphaTub84B PE=2 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 3.657e-88
Identity = 148/175 (84.57%), Postives = 166/175 (94.86%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            +SS+TASLRFDGALN D+TEF TNLVPYPRIHF L +YAPVISAEKA+HEQLSVAEITN+ FEP++ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYV
Sbjct:  235 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA1_APLCA (Tubulin alpha-1 chain OS=Aplysia californica PE=2 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 3.657e-88
Identity = 147/175 (84.00%), Postives = 167/175 (95.43%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            +SS+TASLRFDGALN D+TEF TNLVPYPRIHF L++YAPVISAEKA+HEQLSVAEITN+ FEP++ + KCDPRHGKYMACC++YRGDVVPKDVNAA+ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYV
Sbjct:  235 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQLVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA1_PARLI (Tubulin alpha-1 chain OS=Paracentrotus lividus PE=2 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 4.776e-88
Identity = 147/175 (84.00%), Postives = 167/175 (95.43%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            +SS+TASLRFDGALN D+TEF TNLVPYPRIHF L++YAPVISAEKA+HEQL+V+EITN+ FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYV
Sbjct:  235 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA1C_RAT (Tubulin alpha-1C chain OS=Rattus norvegicus GN=Tuba1c PE=1 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 4.776e-88
Identity = 147/175 (84.00%), Postives = 167/175 (95.43%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            +SS+TASLRFDGALN D+TEF TNLVPYPRIHF L++YAPVISAEKA+HEQL+VAEITN+ FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYV
Sbjct:  235 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLARVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA_TORMA (Tubulin alpha chain OS=Torpedo marmorata PE=2 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 6.237e-88
Identity = 147/175 (84.00%), Postives = 167/175 (95.43%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            +SS+TASLRFDGALN D+TEF TNLVPYPRIHF L++YAPVISAEKA+HEQLSV+EITN+ FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKR+IQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYV
Sbjct:  235 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA3_BOVIN (Tubulin alpha-3 chain OS=Bos taurus GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 8.146e-88
Identity = 147/175 (84.00%), Postives = 166/175 (94.86%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            +SS+TASLRFDGALN D+TEF TNLVPYPRIHF L++YAPVISAEKA+HEQLSVAEITN+ FEP++ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHK DLMYAKRAFVHWYV
Sbjct:  235 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKLDLMYAKRAFVHWYV 409
The following BLAST results are available for this feature:
BLAST of CF417793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
TBA1B_HUMAN2.800e-8884.57Tubulin alpha-1B chain OS=Homo sapiens GN=TUBA1B P... [more]
TBA1B_CRIGR2.800e-8884.57Tubulin alpha-1B chain OS=Cricetulus griseus GN=TU... [more]
TBA1B_BOVIN2.800e-8884.57Tubulin alpha-1B chain OS=Bos taurus PE=1 SV=2[more]
TBA_BOMMO3.657e-8884.57Tubulin alpha chain OS=Bombyx mori PE=2 SV=1[more]
TBA1_DROME3.657e-8884.57Tubulin alpha-1 chain OS=Drosophila melanogaster G... [more]
TBA1_APLCA3.657e-8884.00Tubulin alpha-1 chain OS=Aplysia californica PE=2 ... [more]
TBA1_PARLI4.776e-8884.00Tubulin alpha-1 chain OS=Paracentrotus lividus PE=... [more]
TBA1C_RAT4.776e-8884.00Tubulin alpha-1C chain OS=Rattus norvegicus GN=Tub... [more]
TBA_TORMA6.237e-8884.00Tubulin alpha chain OS=Torpedo marmorata PE=2 SV=1[more]
TBA3_BOVIN8.146e-8884.00Tubulin alpha-3 chain OS=Bos taurus GN=TUBA3 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-723 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417793 ID=CF417793; Name=CF417793; organism=Citrus sinensis; type=EST; length=529bp
TGATCTCATCCCTTACTGCTTCTTTGAGGTTTGATGGAGCTCTGAATGNG
GATGTGACTGAGTTCCANACCAATTTGGTTCCCTATCCAAGGATCCATTT
CATGCTCTCCTCTTATGCCCCAGTTATCTCTGCTGAGAAGGCATTCCATG
AGCAACTTTCAGTTGCTGAGATCACCAACAGTGCTTTTGAGCCATCATCC
ATGATGGCCAAATGTGACCCTCGTCATGGCAAGTACATGGCCTGCTGCTT
GATGTATCGTGGTGATGTTGTGCCTAAGGATGTGAATGCAGCTGTGGCCA
CCATCAAGACCAAGCGCACAATTCAGTTTGTTGACTGGTGCCCTACTGGA
TTCAAGTGCGGTATCAACTATCAGCCACCAACTGTGGTCCCTGGTGGTGA
CCTTGCCAAGGTGCAGAGGGCTGTCTGCATGATTTCCAACTCCACCAGCG
TTGCTGAAGTGTTTTCTCGCATTGATCACAAGTTTGACCTAATGTATGCC
AAGCGTGCTTTTGTGCACTGGTATGTTGG
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