CF417793

Overview
NameCF417793
Unique NameCF417793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA2_PATVU (Tubulin alpha-2/alpha-4 chain OS=Patella vulgata GN=TUB2 PE=2 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 8.146e-88
Identity = 146/175 (83.43%), Postives = 167/175 (95.43%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            +SS+TASLRFDGALN D+TEF TNLVPYPRIHF L++YAPVISAEKA+HEQL+VAEITN+ FEP++ M KCDPRHGKYM+CC++YRGDVVPKDVNAA+ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYV
Sbjct:  235 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMSCCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA1A_PIG (Tubulin alpha-1A chain OS=Sus scrofa GN=TUBA1A PE=1 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 8.146e-88
Identity = 147/175 (84.00%), Postives = 166/175 (94.86%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            +SS+TASLRFDGALN D+TEF TNLVPYPR HF L++YAPVISAEKA+HEQLSVAEITN+ FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKRTIQFVDWCPTGFK GINY+PPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYV
Sbjct:  235 VSSITASLRFDGALNVDLTEFQTNLVPYPRAHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA4A_RAT (Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tuba4a PE=2 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 1.064e-87
Identity = 147/175 (84.00%), Postives = 166/175 (94.86%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            +SS+TASLRFDGALN D+TEF TNLVPYPRIHF L++YAPVISAEKA+HEQLSVAEITN+ FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTKR+IQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYV
Sbjct:  235 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA4A_MOUSE (Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a PE=1 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 1.064e-87
Identity = 147/175 (84.00%), Postives = 166/175 (94.86%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            +SS+TASLRFDGALN D+TEF TNLVPYPRIHF L++YAPVISAEKA+HEQLSVAEITN+ FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTKR+IQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYV
Sbjct:  235 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA4A_MACFA (Tubulin alpha-4A chain OS=Macaca fascicularis GN=TUBA4A PE=2 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 1.064e-87
Identity = 147/175 (84.00%), Postives = 166/175 (94.86%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            +SS+TASLRFDGALN D+TEF TNLVPYPRIHF L++YAPVISAEKA+HEQLSVAEITN+ FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTKR+IQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYV
Sbjct:  235 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA4A_HUMAN (Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A PE=1 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 1.064e-87
Identity = 147/175 (84.00%), Postives = 166/175 (94.86%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            +SS+TASLRFDGALN D+TEF TNLVPYPRIHF L++YAPVISAEKA+HEQLSVAEITN+ FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTKR+IQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYV
Sbjct:  235 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA4A_BOVIN (Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=1 SV=2)

HSP 1 Score: 322.013 bits (824), Expect = 1.064e-87
Identity = 147/175 (84.00%), Postives = 166/175 (94.86%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            +SS+TASLRFDGALN D+TEF TNLVPYPRIHF L++YAPVISAEKA+HEQLSVAEITN+ FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTKR+IQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYV
Sbjct:  235 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA_XENLA (Tubulin alpha chain OS=Xenopus laevis GN=tuba PE=2 SV=2)

HSP 1 Score: 321.627 bits (823), Expect = 1.390e-87
Identity = 146/175 (83.43%), Postives = 167/175 (95.43%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            +SS+TASLRFDGALN D+TEF TNLVPYPRIHF L++YAPVISAEKA+HEQL+VA+ITN+ FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKR+IQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYV
Sbjct:  235 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVADITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBAT_ONCMY (Tubulin alpha chain, testis-specific OS=Oncorhynchus mykiss PE=2 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 1.390e-87
Identity = 147/175 (84.00%), Postives = 165/175 (94.29%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            +SS+TASLRFDGALN D+TEF TNLVPYPRIHF L +YAPVISAEKA+HE LSVAEITN+ FEP++ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYV
Sbjct:  235 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEMLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA_XENTR (Tubulin alpha chain OS=Xenopus tropicalis GN=tuba PE=2 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 2.370e-87
Identity = 146/175 (83.43%), Postives = 165/175 (94.29%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            +SS+TASLRFDGALN D+TEF TNLVPYPRIHF L++YAPVISAEKA+HEQLSV+EITN+ FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTKRTIQFVDWCPTGFK GINYQPPT VPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYV
Sbjct:  235 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 409
The following BLAST results are available for this feature:
BLAST of CF417793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
TBA2_PATVU8.146e-8883.43Tubulin alpha-2/alpha-4 chain OS=Patella vulgata G... [more]
TBA1A_PIG8.146e-8884.00Tubulin alpha-1A chain OS=Sus scrofa GN=TUBA1A PE=... [more]
TBA4A_RAT1.064e-8784.00Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tub... [more]
TBA4A_MOUSE1.064e-8784.00Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a P... [more]
TBA4A_MACFA1.064e-8784.00Tubulin alpha-4A chain OS=Macaca fascicularis GN=T... [more]
TBA4A_HUMAN1.064e-8784.00Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A P... [more]
TBA4A_BOVIN1.064e-8784.00Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=... [more]
TBA_XENLA1.390e-8783.43Tubulin alpha chain OS=Xenopus laevis GN=tuba PE=2... [more]
TBAT_ONCMY1.390e-8784.00Tubulin alpha chain, testis-specific OS=Oncorhynch... [more]
TBA_XENTR2.370e-8783.43Tubulin alpha chain OS=Xenopus tropicalis GN=tuba ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-723 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417793 ID=CF417793; Name=CF417793; organism=Citrus sinensis; type=EST; length=529bp
TGATCTCATCCCTTACTGCTTCTTTGAGGTTTGATGGAGCTCTGAATGNG
GATGTGACTGAGTTCCANACCAATTTGGTTCCCTATCCAAGGATCCATTT
CATGCTCTCCTCTTATGCCCCAGTTATCTCTGCTGAGAAGGCATTCCATG
AGCAACTTTCAGTTGCTGAGATCACCAACAGTGCTTTTGAGCCATCATCC
ATGATGGCCAAATGTGACCCTCGTCATGGCAAGTACATGGCCTGCTGCTT
GATGTATCGTGGTGATGTTGTGCCTAAGGATGTGAATGCAGCTGTGGCCA
CCATCAAGACCAAGCGCACAATTCAGTTTGTTGACTGGTGCCCTACTGGA
TTCAAGTGCGGTATCAACTATCAGCCACCAACTGTGGTCCCTGGTGGTGA
CCTTGCCAAGGTGCAGAGGGCTGTCTGCATGATTTCCAACTCCACCAGCG
TTGCTGAAGTGTTTTCTCGCATTGATCACAAGTTTGACCTAATGTATGCC
AAGCGTGCTTTTGTGCACTGGTATGTTGG
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