CF417809

Overview
NameCF417809
Unique NameCF417809
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length537
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417809 vs. ExPASy Swiss-Prot
Match: MDH_SACD2 (Malate dehydrogenase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=mdh PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.748e-27
Identity = 55/82 (67.07%), Postives = 64/82 (78.05%), Query Frame = 1
Query:    1 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 246
            SA SAA++A  H+RDW LGTPE  WVSMGVYSDGSY +  GLIYSFP  C+NG+W IVQGL+IDEFSR K+  T  EL EE+
Sbjct:  237 SAASAANAAIFHMRDWALGTPENDWVSMGVYSDGSYGIEEGLIYSFPCVCKNGDWEIVQGLTIDEFSRAKMTATENELKEER 318          
BLAST of CF417809 vs. ExPASy Swiss-Prot
Match: MDH_CELJU (Malate dehydrogenase OS=Cellvibrio japonicus (strain Ueda107) GN=mdh PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.090e-26
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 1
Query:    1 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 246
            SA SAA++A +HIRDW LGTP   WVSMGVYSDGSY +  GLIYSFP  C+NG+W IVQGL I+EFSR K+  T +EL EE+
Sbjct:  237 SAASAANAAINHIRDWALGTPANDWVSMGVYSDGSYGIEKGLIYSFPCVCKNGDWEIVQGLDINEFSRAKMTATEKELQEER 318          
BLAST of CF417809 vs. ExPASy Swiss-Prot
Match: MDH_DEIDV (Malate dehydrogenase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=mdh PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.429e-26
Identity = 56/82 (68.29%), Postives = 65/82 (79.27%), Query Frame = 1
Query:    1 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 246
            SA SAAS+A DH+RDW LGT EG WVSMG+ SDGSY VP GLIY FPVT ++G++ IVQGL I EFSR K+D TA EL EE+
Sbjct:  239 SAASAASAAIDHMRDWALGTSEGEWVSMGIPSDGSYGVPEGLIYGFPVTVKDGKYQIVQGLEISEFSRGKMDATARELEEER 320          
BLAST of CF417809 vs. ExPASy Swiss-Prot
Match: MDHA_DICDI (Probable malate dehydrogenase 1 OS=Dictyostelium discoideum GN=mdhA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.429e-26
Identity = 55/87 (63.22%), Postives = 68/87 (78.16%), Query Frame = 1
Query:    1 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKALAYS 261
            SA SAA++   H+RDW+LGT +G  VSM VYSDGSYNVP GLI+SFPVTC NG+WTIVQGL I+  +++K+D T +EL EEK  A S
Sbjct:  302 SAASAANAIVGHVRDWLLGTKDGEHVSMAVYSDGSYNVPKGLIFSFPVTCHNGQWTIVQGLKINSSTQQKIDATIKELQEEKETAMS 388          
BLAST of CF417809 vs. ExPASy Swiss-Prot
Match: MDH_ALHEH (Malate dehydrogenase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.144e-26
Identity = 55/82 (67.07%), Postives = 64/82 (78.05%), Query Frame = 1
Query:    1 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 246
            SA SAASSA DHIRDWVLGTPEG W SM V SDGSY +  G+IYS+P  CRNG++ IVQ L IDEFSR+K+  T +EL EE+
Sbjct:  237 SAASAASSAIDHIRDWVLGTPEGEWTSMAVPSDGSYGIEKGIIYSYPCVCRNGDYEIVQDLEIDEFSREKMQATEKELVEER 318          
BLAST of CF417809 vs. ExPASy Swiss-Prot
Match: MDH_TERTT (Malate dehydrogenase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=mdh PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.412e-26
Identity = 53/82 (64.63%), Postives = 64/82 (78.05%), Query Frame = 1
Query:    1 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 246
            SA SAA++A  H+RDW LG+PEG WVSMGVYSDGSY +  GLIYSFP  C+NG+W IVQGLSIDEFS+ ++  T  EL  E+
Sbjct:  237 SAASAANAAIFHMRDWALGSPEGDWVSMGVYSDGSYGIEKGLIYSFPCVCKNGDWEIVQGLSIDEFSQARMTATETELQGER 318          
BLAST of CF417809 vs. ExPASy Swiss-Prot
Match: MDH_MYCPA (Malate dehydrogenase OS=Mycobacterium paratuberculosis GN=mdh PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.057e-25
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 1
Query:    1 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 246
            SA SAAS+  D  RDW+LGTP G WVSM V SDGSY VP GLI SFPVT ++G+WTIVQGL IDEFSR ++D T  EL++E+
Sbjct:  239 SAASAASATTDAARDWLLGTPAGDWVSMAVISDGSYGVPEGLISSFPVTTKDGDWTIVQGLEIDEFSRSRIDKTTAELADER 320          
BLAST of CF417809 vs. ExPASy Swiss-Prot
Match: MDH_MYCA1 (Malate dehydrogenase OS=Mycobacterium avium (strain 104) GN=mdh PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.057e-25
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 1
Query:    1 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 246
            SA SAAS+  D  RDW+LGTP G WVSM V SDGSY VP GLI SFPVT ++G+WTIVQGL IDEFSR ++D T  EL++E+
Sbjct:  239 SAASAASATTDAARDWLLGTPAGDWVSMAVISDGSYGVPEGLISSFPVTTKDGDWTIVQGLEIDEFSRSRIDKTTAELADER 320          
BLAST of CF417809 vs. ExPASy Swiss-Prot
Match: MDHC_DICDI (Probable malate dehydrogenase 3 OS=Dictyostelium discoideum GN=mdhC PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.581e-25
Identity = 54/85 (63.53%), Postives = 65/85 (76.47%), Query Frame = 1
Query:    1 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKALA 255
            SA SAA +  DH+ DWVLGT EG +VSMGVYSDGSY VP GLI+SFPV C NG++TIVQGL +D+ S+  ++LT EEL  EK  A
Sbjct:  243 SAASAAKAITDHMHDWVLGTAEGEYVSMGVYSDGSYGVPEGLIFSFPVKCANGKYTIVQGLQMDDLSKNLINLTTEELVAEKTTA 327          
BLAST of CF417809 vs. ExPASy Swiss-Prot
Match: MDH_BDEBA (Malate dehydrogenase OS=Bdellovibrio bacteriovorus GN=mdh PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 7.815e-25
Identity = 53/82 (64.63%), Postives = 68/82 (82.93%), Query Frame = 1
Query:    1 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 246
            SA SAAS+A DHIRDW LGT  G WV+MG+ SDGSY++P G++Y FPVTC+NGE+ IV+GL ID FSR+K++ T +EL+EEK
Sbjct:  248 SAASAASAAVDHIRDWWLGT-NGEWVTMGIPSDGSYDIPEGIMYGFPVTCKNGEYEIVKGLEIDAFSREKMNNTLKELNEEK 328          
The following BLAST results are available for this feature:
BLAST of CF417809 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
MDH_SACD23.748e-2767.07Malate dehydrogenase OS=Saccharophagus degradans (... [more]
MDH_CELJU1.090e-2665.85Malate dehydrogenase OS=Cellvibrio japonicus (stra... [more]
MDH_DEIDV2.429e-2668.29Malate dehydrogenase OS=Deinococcus deserti (strai... [more]
MDHA_DICDI2.429e-2663.22Probable malate dehydrogenase 1 OS=Dictyostelium d... [more]
MDH_ALHEH4.144e-2667.07Malate dehydrogenase OS=Alkalilimnicola ehrlichei ... [more]
MDH_TERTT5.412e-2664.63Malate dehydrogenase OS=Teredinibacter turnerae (s... [more]
MDH_MYCPA2.057e-2565.85Malate dehydrogenase OS=Mycobacterium paratubercul... [more]
MDH_MYCA12.057e-2565.85Malate dehydrogenase OS=Mycobacterium avium (strai... [more]
MDHC_DICDI4.581e-2563.53Probable malate dehydrogenase 3 OS=Dictyostelium d... [more]
MDH_BDEBA7.815e-2564.63Malate dehydrogenase OS=Bdellovibrio bacteriovorus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-739 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417809 ID=CF417809; Name=CF417809; organism=Citrus sinensis; type=EST; length=537bp
AGTGCTCTGTCTGCTGCTAGCTCTGCTTGTGACCATATCCGTGATTGGGT
TCTTGGAACTCCTGAGGGCACTTGGGTCTCCATGGGGGTATACTCTGATG
GTTCATACAATGTACCAGCTGGGCTCATTTACTCATTCCCAGTAACCTGC
CGCAACGGTGAATGGACAATTGTTCAAGGACTCAGCATTGATGAATTCTC
AAGGAAGAAGTTGGACTTGACAGCAGAGGAGCTCTCCGAGGAGAAGGCCC
TCGCATACTCATGTNTCTCTTAAATGCTTTCTTCCCTTCAATAGTGTGTT
ACCAAGGCCCTTAGCTTTGTCTGAGTAGTTGGTAGAGTTACAGTTTCGAA
TAAAACCATTGTTGAAACCTGGAGGAACCATTGATGATGGAGAAGCCTTT
CCATCTTATGTTGCTATTTCTGCATTTGAATATCGGGATTTTGGAGTTTT
GTTACTTTTCCTGGATAAATGGATATTAAATGCCCATTGTGATTTATGTA
TCAAACTATCAATAACAGTTTTTTTTTTTTTTTTAAA
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