CF417809

Overview
NameCF417809
Unique NameCF417809
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length537
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417809 vs. ExPASy Swiss-Prot
Match: MDH_ARTAT (Malate dehydrogenase OS=Arthrobacter aurescens (strain TC1) GN=mdh PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 7.815e-25
Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = 1
Query:    1 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 249
            SA SAAS+  D  RDW+LGTPEG WVSM V SDGSY VP GL+YS+PVT   G W IV+GL +++FSR+K+D TA EL +E+A
Sbjct:  238 SAASAASATIDAARDWLLGTPEGDWVSMAVASDGSYGVPEGLMYSYPVTTSGGNWEIVEGLEVNDFSRRKMDATAAELFDERA 320          
BLAST of CF417809 vs. ExPASy Swiss-Prot
Match: MDH_MYCLE (Malate dehydrogenase OS=Mycobacterium leprae GN=mdh PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.274e-24
Identity = 52/82 (63.41%), Postives = 64/82 (78.05%), Query Frame = 1
Query:    1 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 246
            SA SAAS+  D  RDW+LGTPEG WVSM V SDGSY VP GLI SFPVT  +G+WTIV+GL ID+FSR ++D +  EL++E+
Sbjct:  239 SAASAASATIDAARDWLLGTPEGNWVSMAVVSDGSYGVPEGLISSFPVTTTDGDWTIVRGLGIDDFSRGRIDKSTAELADER 320          
BLAST of CF417809 vs. ExPASy Swiss-Prot
Match: MDH_DEIRA (Malate dehydrogenase OS=Deinococcus radiodurans GN=mdh PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.274e-24
Identity = 50/82 (60.98%), Postives = 64/82 (78.05%), Query Frame = 1
Query:    1 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 246
            SA SAAS+A DH+ DW LGT +G WVSMG+ SDGSY +P GLIY FPV  ++G++ IVQGL + +FSR K+D TA+EL EE+
Sbjct:  239 SAASAASAAIDHMHDWALGTKDGEWVSMGIPSDGSYGIPEGLIYGFPVRVKDGKYEIVQGLDVSDFSRGKMDATAQELEEER 320          
BLAST of CF417809 vs. ExPASy Swiss-Prot
Match: MDHC_FELCA (Malate dehydrogenase, cytoplasmic OS=Felis catus GN=MDH1 PE=2 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 2.970e-24
Identity = 53/91 (58.24%), Postives = 71/91 (78.02%), Query Frame = 1
Query:    1 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKALAYSCXS 270
            SA+SAA + CDH+RD   GTPEG +VSMG+ SDG+ Y VP  L+YSFPVT +N  W +V+GL+I++FSR+K+DLTA+EL+EEK  A+   S
Sbjct:  242 SAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNPYGVPDDLLYSFPVTIKNKTWKVVEGLTINDFSREKMDLTAKELAEEKETAFEFLS 332          
BLAST of CF417809 vs. ExPASy Swiss-Prot
Match: MDH_THETH (Malate dehydrogenase OS=Thermus thermophilus GN=mdh PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.065e-24
Identity = 47/81 (58.02%), Postives = 66/81 (81.48%), Query Frame = 1
Query:    1 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 243
            SA SAA++A +HIRDW LGTPEG WVSM V S G Y +P G++YSFPVT ++G + +V+GL I+EF+RK++++TA+EL +E
Sbjct:  237 SAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDE 317          
BLAST of CF417809 vs. ExPASy Swiss-Prot
Match: MDH_THET8 (Malate dehydrogenase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=mdh PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.065e-24
Identity = 47/81 (58.02%), Postives = 66/81 (81.48%), Query Frame = 1
Query:    1 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 243
            SA SAA++A +HIRDW LGTPEG WVSM V S G Y +P G++YSFPVT ++G + +V+GL I+EF+RK++++TA+EL +E
Sbjct:  237 SAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDE 317          
BLAST of CF417809 vs. ExPASy Swiss-Prot
Match: MDH_THET2 (Malate dehydrogenase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=mdh PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.065e-24
Identity = 47/81 (58.02%), Postives = 66/81 (81.48%), Query Frame = 1
Query:    1 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 243
            SA SAA++A +HIRDW LGTPEG WVSM V S G Y +P G++YSFPVT ++G + +V+GL I+EF+RK++++TA+EL +E
Sbjct:  237 SAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDE 317          
BLAST of CF417809 vs. ExPASy Swiss-Prot
Match: MDH_ACIAD (Malate dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=mdh PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.065e-24
Identity = 51/83 (61.45%), Postives = 65/83 (78.31%), Query Frame = 1
Query:    1 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 249
            SA SAA++A DH+RDW LGT  G WV+MG+ SDGSY +P G+IY  PVTC NGE+  V+GL IDEFSR+++D T +EL EE+A
Sbjct:  240 SAASAANAAIDHMRDWALGT-NGKWVTMGIPSDGSYGIPEGVIYGVPVTCENGEYKRVEGLEIDEFSRERMDKTLQELEEERA 321          
BLAST of CF417809 vs. ExPASy Swiss-Prot
Match: MDH_THEFY (Malate dehydrogenase OS=Thermobifida fusca (strain YX) GN=mdh PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.616e-24
Identity = 50/82 (60.98%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    1 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 246
            SA SAA++A DH+ DWV GTPEG W S+ + SDGSY VP GL+ SFPV  RNG W IVQGL I+EFSR+++D +  EL EE+
Sbjct:  239 SAASAANAAIDHVYDWVNGTPEGDWTSVALPSDGSYGVPEGLVSSFPVVSRNGSWEIVQGLEINEFSRERIDASVRELEEER 320          
BLAST of CF417809 vs. ExPASy Swiss-Prot
Match: MDHC_PIG (Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN=MDH1 PE=1 SV=4)

HSP 1 Score: 110.153 bits (274), Expect = 6.616e-24
Identity = 54/91 (59.34%), Postives = 70/91 (76.92%), Query Frame = 1
Query:    1 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKALAYSCXS 270
            SA+SAA + CDH+RD   GTPEG +VSMG+ SDG SY VP  L+YSFPVT ++  W IV+GL I++FSR+K+DLTA+EL+EEK  A+   S
Sbjct:  242 SAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGLPINDFSREKMDLTAKELAEEKETAFEFLS 332          
The following BLAST results are available for this feature:
BLAST of CF417809 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
MDH_ARTAT7.815e-2562.65Malate dehydrogenase OS=Arthrobacter aurescens (st... [more]
MDH_MYCLE2.274e-2463.41Malate dehydrogenase OS=Mycobacterium leprae GN=md... [more]
MDH_DEIRA2.274e-2460.98Malate dehydrogenase OS=Deinococcus radiodurans GN... [more]
MDHC_FELCA2.970e-2458.24Malate dehydrogenase, cytoplasmic OS=Felis catus G... [more]
MDH_THETH5.065e-2458.02Malate dehydrogenase OS=Thermus thermophilus GN=md... [more]
MDH_THET85.065e-2458.02Malate dehydrogenase OS=Thermus thermophilus (stra... [more]
MDH_THET25.065e-2458.02Malate dehydrogenase OS=Thermus thermophilus (stra... [more]
MDH_ACIAD5.065e-2461.45Malate dehydrogenase OS=Acinetobacter sp. (strain ... [more]
MDH_THEFY6.616e-2460.98Malate dehydrogenase OS=Thermobifida fusca (strain... [more]
MDHC_PIG6.616e-2459.34Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-739 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417809 ID=CF417809; Name=CF417809; organism=Citrus sinensis; type=EST; length=537bp
AGTGCTCTGTCTGCTGCTAGCTCTGCTTGTGACCATATCCGTGATTGGGT
TCTTGGAACTCCTGAGGGCACTTGGGTCTCCATGGGGGTATACTCTGATG
GTTCATACAATGTACCAGCTGGGCTCATTTACTCATTCCCAGTAACCTGC
CGCAACGGTGAATGGACAATTGTTCAAGGACTCAGCATTGATGAATTCTC
AAGGAAGAAGTTGGACTTGACAGCAGAGGAGCTCTCCGAGGAGAAGGCCC
TCGCATACTCATGTNTCTCTTAAATGCTTTCTTCCCTTCAATAGTGTGTT
ACCAAGGCCCTTAGCTTTGTCTGAGTAGTTGGTAGAGTTACAGTTTCGAA
TAAAACCATTGTTGAAACCTGGAGGAACCATTGATGATGGAGAAGCCTTT
CCATCTTATGTTGCTATTTCTGCATTTGAATATCGGGATTTTGGAGTTTT
GTTACTTTTCCTGGATAAATGGATATTAAATGCCCATTGTGATTTATGTA
TCAAACTATCAATAACAGTTTTTTTTTTTTTTTTAAA
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