CF417839
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_SULIM (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=psmA PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.227e-18 Identity = 50/127 (39.37%), Postives = 80/127 (62.99%), Query Frame = 2 Query: 14 HRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGL 379 HRL ++PV+++ +T+ +A ++Q YTQ GGVRPFG++ +I G D VP LY T+PSG + ++A A G+ + EFLE NYKE + ++TI LA++AL ++ K +E+ + + GL Sbjct: 101 HRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEIGYASTQTGL 225
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_SULIL (Proteasome subunit alpha OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=psmA PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.227e-18 Identity = 50/127 (39.37%), Postives = 80/127 (62.99%), Query Frame = 2 Query: 14 HRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGL 379 HRL ++PV+++ +T+ +A ++Q YTQ GGVRPFG++ +I G D VP LY T+PSG + ++A A G+ + EFLE NYKE + ++TI LA++AL ++ K +E+ + + GL Sbjct: 101 HRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEIGYASTQTGL 225
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_SULIK (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=psmA PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.227e-18 Identity = 50/127 (39.37%), Postives = 80/127 (62.99%), Query Frame = 2 Query: 14 HRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGL 379 HRL ++PV+++ +T+ +A ++Q YTQ GGVRPFG++ +I G D VP LY T+PSG + ++A A G+ + EFLE NYKE + ++TI LA++AL ++ K +E+ + + GL Sbjct: 101 HRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEIGYASTQTGL 225
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_SULIA (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.27) GN=psmA PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.227e-18 Identity = 50/127 (39.37%), Postives = 80/127 (62.99%), Query Frame = 2 Query: 14 HRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGL 379 HRL ++PV+++ +T+ +A ++Q YTQ GGVRPFG++ +I G D VP LY T+PSG + ++A A G+ + EFLE NYKE + ++TI LA++AL ++ K +E+ + + GL Sbjct: 101 HRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEIGYASTQTGL 225
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA4_MACFA (Proteasome subunit alpha type-4 OS=Macaca fascicularis GN=PSMA4 PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.227e-18 Identity = 51/146 (34.93%), Postives = 86/146 (58.90%), Query Frame = 2 Query: 8 QSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQETIK----LAIRAL---LEVVESGGKNIEVAVMTREKG---LKQLDEAEIDAMV 415 Q + L ++P+ E + + ++Q YTQ GG RPFG+S L +G+D + G LYQ+DP+G + WKA G NS + L+ +YKE G+ T+K LAI+ L ++V + + +E+A +TRE G ++ L + E++ ++ Sbjct: 95 QRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGF-QLYQSDPNGNYGGWKATCIGNNSAAAVSMLKQDYKE--GEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 237
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_METKA (Proteasome subunit alpha OS=Methanopyrus kandleri GN=psmA PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.733e-18 Identity = 55/140 (39.29%), Postives = 83/140 (59.29%), Query Frame = 2 Query: 2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEV--VESGGKNIEVAVMTREKGLKQLDEAEIDAM 412 E Q++R T +P+ V+ + + I L+Q YTQ GGVRPFG + LI G D T L++TDPSG + KA A G + E Y+E + QE I+LA+RAL E E+ N+E+AV+ ++ G ++L+ +I+ M Sbjct: 97 EAQTYRYTYGEPIDVDVLVKAICDLKQVYTQHGGVRPFGTALLIAGVD--TKGCRLFETDPSGALTEHKATAIGEGRQEALDVFEEEYREDMTLQEAIELAVRALYEASREETTADNLEIAVVDKQ-GFRKLERKKIEEM 233
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_THEGJ (Proteasome subunit alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=psmA PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.662e-18 Identity = 57/137 (41.61%), Postives = 80/137 (58.39%), Query Frame = 2 Query: 2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQE-TIKLAIRALLEVVES-GGKNIEVAVMT-REKGLKQLDEAEI 403 E Q +RLT +PV + + + I L+Q +TQ GGVRPFG + L+ G + P LY+TDPSG + WKA A G N+ E +Y + E IKLAI AL + +E ++IEVA +T EK K+LD+ E+ Sbjct: 97 EAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNE---KPELYETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYSDDIDMEGAIKLAILALAKTLEEPSPESIEVAYITLDEKRWKKLDKEEV 230
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA2_RAT (Proteasome subunit alpha type-2 OS=Rattus norvegicus GN=Psma2 PE=1 SV=3) HSP 1 Score: 91.2781 bits (225), Expect = 4.662e-18 Identity = 54/135 (40.00%), Postives = 78/135 (57.78%), Query Frame = 2 Query: 8 QSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEI 403 Q + L ++P+ + + +A + Q+YTQSGGVRPFG+S LI G++ G P L+Q+DPSG + AWKA A G+N + + FLE Y E ++ I AI L E E NIEV + E G ++L E+ Sbjct: 95 QQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWN--EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGI-CNEAGFRRLTPTEV 226
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA2_MOUSE (Proteasome subunit alpha type-2 OS=Mus musculus GN=Psma2 PE=1 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 4.662e-18 Identity = 54/135 (40.00%), Postives = 78/135 (57.78%), Query Frame = 2 Query: 8 QSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEI 403 Q + L ++P+ + + +A + Q+YTQSGGVRPFG+S LI G++ G P L+Q+DPSG + AWKA A G+N + + FLE Y E ++ I AI L E E NIEV + E G ++L E+ Sbjct: 95 QQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWN--EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGI-CNEAGFRRLTPTEV 226
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA2_HUMAN (Proteasome subunit alpha type-2 OS=Homo sapiens GN=PSMA2 PE=1 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 4.662e-18 Identity = 54/135 (40.00%), Postives = 78/135 (57.78%), Query Frame = 2 Query: 8 QSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEI 403 Q + L ++P+ + + +A + Q+YTQSGGVRPFG+S LI G++ G P L+Q+DPSG + AWKA A G+N + + FLE Y E ++ I AI L E E NIEV + E G ++L E+ Sbjct: 95 QQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWN--EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGI-CNEAGFRRLTPTEV 226 The following BLAST results are available for this feature:
BLAST of CF417839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 125
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417839 ID=CF417839; Name=CF417839; organism=Citrus sinensis; type=EST; length=644bpback to top |