CF417839

Overview
NameCF417839
Unique NameCF417839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_SULIM (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.227e-18
Identity = 50/127 (39.37%), Postives = 80/127 (62.99%), Query Frame = 2
Query:   14 HRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGL 379
            HRL  ++PV+++ +T+ +A ++Q YTQ GGVRPFG++ +I G D    VP LY T+PSG +  ++A A G+   +  EFLE NYKE  + ++TI LA++AL   ++   K     +E+   + + GL
Sbjct:  101 HRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEIGYASTQTGL 225          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_SULIL (Proteasome subunit alpha OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.227e-18
Identity = 50/127 (39.37%), Postives = 80/127 (62.99%), Query Frame = 2
Query:   14 HRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGL 379
            HRL  ++PV+++ +T+ +A ++Q YTQ GGVRPFG++ +I G D    VP LY T+PSG +  ++A A G+   +  EFLE NYKE  + ++TI LA++AL   ++   K     +E+   + + GL
Sbjct:  101 HRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEIGYASTQTGL 225          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_SULIK (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=psmA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.227e-18
Identity = 50/127 (39.37%), Postives = 80/127 (62.99%), Query Frame = 2
Query:   14 HRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGL 379
            HRL  ++PV+++ +T+ +A ++Q YTQ GGVRPFG++ +I G D    VP LY T+PSG +  ++A A G+   +  EFLE NYKE  + ++TI LA++AL   ++   K     +E+   + + GL
Sbjct:  101 HRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEIGYASTQTGL 225          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_SULIA (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.27) GN=psmA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.227e-18
Identity = 50/127 (39.37%), Postives = 80/127 (62.99%), Query Frame = 2
Query:   14 HRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGL 379
            HRL  ++PV+++ +T+ +A ++Q YTQ GGVRPFG++ +I G D    VP LY T+PSG +  ++A A G+   +  EFLE NYKE  + ++TI LA++AL   ++   K     +E+   + + GL
Sbjct:  101 HRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEIGYASTQTGL 225          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA4_MACFA (Proteasome subunit alpha type-4 OS=Macaca fascicularis GN=PSMA4 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.227e-18
Identity = 51/146 (34.93%), Postives = 86/146 (58.90%), Query Frame = 2
Query:    8 QSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQETIK----LAIRAL---LEVVESGGKNIEVAVMTREKG---LKQLDEAEIDAMV 415
            Q + L  ++P+  E +   +  ++Q YTQ GG RPFG+S L +G+D + G   LYQ+DP+G +  WKA   G NS +    L+ +YKE  G+ T+K    LAI+ L   ++V +   + +E+A +TRE G   ++ L + E++ ++
Sbjct:   95 QRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGF-QLYQSDPNGNYGGWKATCIGNNSAAAVSMLKQDYKE--GEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 237          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_METKA (Proteasome subunit alpha OS=Methanopyrus kandleri GN=psmA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.733e-18
Identity = 55/140 (39.29%), Postives = 83/140 (59.29%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEV--VESGGKNIEVAVMTREKGLKQLDEAEIDAM 412
            E Q++R T  +P+ V+ + + I  L+Q YTQ GGVRPFG + LI G D  T    L++TDPSG  +  KA A G       +  E  Y+E  + QE I+LA+RAL E    E+   N+E+AV+ ++ G ++L+  +I+ M
Sbjct:   97 EAQTYRYTYGEPIDVDVLVKAICDLKQVYTQHGGVRPFGTALLIAGVD--TKGCRLFETDPSGALTEHKATAIGEGRQEALDVFEEEYREDMTLQEAIELAVRALYEASREETTADNLEIAVVDKQ-GFRKLERKKIEEM 233          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_THEGJ (Proteasome subunit alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=psmA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.662e-18
Identity = 57/137 (41.61%), Postives = 80/137 (58.39%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQE-TIKLAIRALLEVVES-GGKNIEVAVMT-REKGLKQLDEAEI 403
            E Q +RLT  +PV +  + + I  L+Q +TQ GGVRPFG + L+ G +     P LY+TDPSG +  WKA A G   N+     E +Y +    E  IKLAI AL + +E    ++IEVA +T  EK  K+LD+ E+
Sbjct:   97 EAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNE---KPELYETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYSDDIDMEGAIKLAILALAKTLEEPSPESIEVAYITLDEKRWKKLDKEEV 230          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA2_RAT (Proteasome subunit alpha type-2 OS=Rattus norvegicus GN=Psma2 PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 4.662e-18
Identity = 54/135 (40.00%), Postives = 78/135 (57.78%), Query Frame = 2
Query:    8 QSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEI 403
            Q + L  ++P+    + + +A + Q+YTQSGGVRPFG+S LI G++   G P L+Q+DPSG + AWKA A G+N  + + FLE  Y E    ++ I  AI  L E  E      NIEV +   E G ++L   E+
Sbjct:   95 QQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWN--EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGI-CNEAGFRRLTPTEV 226          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA2_MOUSE (Proteasome subunit alpha type-2 OS=Mus musculus GN=Psma2 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.662e-18
Identity = 54/135 (40.00%), Postives = 78/135 (57.78%), Query Frame = 2
Query:    8 QSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEI 403
            Q + L  ++P+    + + +A + Q+YTQSGGVRPFG+S LI G++   G P L+Q+DPSG + AWKA A G+N  + + FLE  Y E    ++ I  AI  L E  E      NIEV +   E G ++L   E+
Sbjct:   95 QQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWN--EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGI-CNEAGFRRLTPTEV 226          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA2_HUMAN (Proteasome subunit alpha type-2 OS=Homo sapiens GN=PSMA2 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.662e-18
Identity = 54/135 (40.00%), Postives = 78/135 (57.78%), Query Frame = 2
Query:    8 QSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEI 403
            Q + L  ++P+    + + +A + Q+YTQSGGVRPFG+S LI G++   G P L+Q+DPSG + AWKA A G+N  + + FLE  Y E    ++ I  AI  L E  E      NIEV +   E G ++L   E+
Sbjct:   95 QQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWN--EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGI-CNEAGFRRLTPTEV 226          
The following BLAST results are available for this feature:
BLAST of CF417839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
PSMA_SULIM1.227e-1839.37Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIL1.227e-1839.37Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIK1.227e-1839.37Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIA1.227e-1839.37Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSA4_MACFA1.227e-1834.93Proteasome subunit alpha type-4 OS=Macaca fascicul... [more]
PSMA_METKA2.733e-1839.29Proteasome subunit alpha OS=Methanopyrus kandleri ... [more]
PSMA_THEGJ4.662e-1841.61Proteasome subunit alpha OS=Thermococcus gammatole... [more]
PSA2_RAT4.662e-1840.00Proteasome subunit alpha type-2 OS=Rattus norvegic... [more]
PSA2_MOUSE4.662e-1840.00Proteasome subunit alpha type-2 OS=Mus musculus GN... [more]
PSA2_HUMAN4.662e-1840.00Proteasome subunit alpha type-2 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-769 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417839 ID=CF417839; Name=CF417839; organism=Citrus sinensis; type=EST; length=644bp
AGAATGTCAGAGCCACAGGCTGACTGTTGAGGACCCAGTAACTGTTGAGG
ACATCACTCGTTACATTGCAGGTCTCCAGCAGAAGTACACACAAAGCGGT
GGTGTGAGACCATTTGGTCTTTCTACTCTGATTGTGGGCTTTGATCCATA
CACTGGCGTGCCATCACTATATCAGACAGATCCTTCTGGGACATTTTCTG
CTTGGAAAGCTAATGCAACTGGGAGAAACTCTAATTCAATGAGGGAGTTT
CTGGAGNAAAACTATAAGGAAACTTCCGGGCAAGAAACTATAAAGCTTGC
AATTCGGGCATTACTTGAGGTTGTTGAGAGTGGGGGCAAAAACATAGAAG
TTGCTGTGATGACAAGGGAGAAGGGTCTGAAGCAGCTTGATGAAGCTGAA
ATTGATGCCATGGTAGCCGAGATTGAAGCAAAGAAGGCCGCCGCTGAGGC
TGCAAAGAAGGGACCTCCCAAGGAAACATGAGTTTTTAGTTCTGGCTTCT
GTTTTTTCCATTGCCTGTTGTTTTTCACCTTTCAGAATTTTAGTATGCTT
TTTTTNGTGGNTAAGTTTTATATGCTTTTAGATTTGCATTCNAAAGATAT
ACCAGAGCCACCAGATTATTGCCAGCTTAAATTTTCTTATATGG
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