CF417847

Overview
NameCF417847
Unique NameCF417847
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417847 vs. ExPASy Swiss-Prot
Match: THIO_HELPJ (Thioredoxin OS=Helicobacter pylori J99 GN=trxA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.361e-13
Identity = 37/104 (35.58%), Postives = 63/104 (60.58%), Query Frame = 2
Query:  344 EITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLXLKEYIDTLL 655
            E+TE  F +T+ K     LV+F A WCGPC++++P ++ LA EY  +  + K++ D   +L  ++ +  +PTL+  K+G+ V   +  G  TK+ LKE ++ LL
Sbjct:    6 ELTEENFESTIKKGV--ALVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTKDGEVV--HQLVGVQTKVALKEQLNKLL 105          
BLAST of CF417847 vs. ExPASy Swiss-Prot
Match: THIOT_DROME (Thioredoxin-T OS=Drosophila melanogaster GN=TrxT PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.361e-13
Identity = 28/69 (40.58%), Postives = 47/69 (68.12%), Query Frame = 2
Query:  374 VLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNG 580
            +L  ++ V+++F A+WCGPC+++AP ++ LA EY DR+ V+K++ D N  +  EY V  +PT +  K G
Sbjct:   16 ILAEDKLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVDENEDITVEYNVNSMPTFVFIKGG 84          
BLAST of CF417847 vs. ExPASy Swiss-Prot
Match: THIO_CHLMU (Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.597e-12
Identity = 34/68 (50.00%), Postives = 50/68 (73.53%), Query Frame = 2
Query:  395 VLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPES 598
            VLV+F A WCGPC+++ P +E LA E    +T++K+D DA+P+  E++ V  +PTLILFK+G+EV  S
Sbjct:   19 VLVDFFAEWCGPCKMLTPVLEALAAEL-PYVTILKLDIDASPRPAEQFGVSSIPTLILFKDGKEVERS 85          
BLAST of CF417847 vs. ExPASy Swiss-Prot
Match: THIO2_CHLTE (Thioredoxin-2 OS=Chlorobium tepidum GN=trx2 PE=3 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.597e-12
Identity = 33/101 (32.67%), Postives = 58/101 (57.43%), Query Frame = 2
Query:  344 EITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLXLKEYID 646
            E T+  F   +L S++  LV+F A WCGPC ++ P +E LA +Y  +  + K++ D NP    +Y +  +PT+++ K G+ V   +  GA+ K  + + +D
Sbjct:    7 EATDQNFQAEILNSDKVALVDFWAAWCGPCMMLGPVIEELAGDYEGKAIIAKLNVDENPNTAGQYGIRSIPTMLIIKGGKVV--DQMVGALPKNMIAKKLD 105          
BLAST of CF417847 vs. ExPASy Swiss-Prot
Match: TIGA_ASPNG (Protein disulfide-isomerase tigA OS=Aspergillus niger GN=tigA PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.557e-12
Identity = 43/112 (38.39%), Postives = 61/112 (54.46%), Query Frame = 2
Query:  299 RLAIRVRC-GASSGIT----EITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEY---GDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREG 610
            RL+  V C G +S +T    ++    F + VLKS +P LVEF A WCG C+ +AP  E L Q +    D++TV K+D D +  L  ++ V G PTL  F    + PE  + G
Sbjct:    3 RLSNLVSCLGLASAVTAAVVDLVPKNFDDVVLKSGKPALVEFFAPWCGHCKNLAPVYEELGQAFAHASDKVTVGKVDADEHRDLGRKFGVQGFPTLKWFDGKSDEPEDYKGG 114          
BLAST of CF417847 vs. ExPASy Swiss-Prot
Match: THIO2_SHIFL (Thioredoxin-2 OS=Shigella flexneri GN=trxC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.557e-12
Identity = 39/115 (33.91%), Postives = 64/115 (55.65%), Query Frame = 2
Query:  317 RCGASSGITEITES--EFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLXLKEYIDTLL 655
            RCG      E+  +  E  + +LK + PV+++F A WCGPCR  AP  E +AQE   ++  VK++ +A  +L   + +  +PT+++FKNGQ V      GA+ K     +++  L
Sbjct:   27 RCGHDLFDGEVINATGETLDKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVV--DMLNGAVPKAPFDSWLNESL 139          
BLAST of CF417847 vs. ExPASy Swiss-Prot
Match: THIO2_ECOLI (Thioredoxin-2 OS=Escherichia coli (strain K12) GN=trxC PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.557e-12
Identity = 39/115 (33.91%), Postives = 64/115 (55.65%), Query Frame = 2
Query:  317 RCGASSGITEITES--EFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLXLKEYIDTLL 655
            RCG      E+  +  E  + +LK + PV+++F A WCGPCR  AP  E +AQE   ++  VK++ +A  +L   + +  +PT+++FKNGQ V      GA+ K     +++  L
Sbjct:   27 RCGHDLFDGEVINATGETLDKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVV--DMLNGAVPKAPFDSWLNESL 139          
BLAST of CF417847 vs. ExPASy Swiss-Prot
Match: THIO2_ECOL6 (Thioredoxin-2 OS=Escherichia coli O6 GN=trxC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.557e-12
Identity = 39/115 (33.91%), Postives = 64/115 (55.65%), Query Frame = 2
Query:  317 RCGASSGITEITES--EFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLXLKEYIDTLL 655
            RCG      E+  +  E  + +LK + PV+++F A WCGPCR  AP  E +AQE   ++  VK++ +A  +L   + +  +PT+++FKNGQ V      GA+ K     +++  L
Sbjct:   27 RCGHDLFDGEVINATGETLDKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVV--DMLNGAVPKAPFDSWLNESL 139          
BLAST of CF417847 vs. ExPASy Swiss-Prot
Match: THIO2_ECO57 (Thioredoxin-2 OS=Escherichia coli O157:H7 GN=trxC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.557e-12
Identity = 39/115 (33.91%), Postives = 64/115 (55.65%), Query Frame = 2
Query:  317 RCGASSGITEITES--EFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLXLKEYIDTLL 655
            RCG      E+  +  E  + +LK + PV+++F A WCGPCR  AP  E +AQE   ++  VK++ +A  +L   + +  +PT+++FKNGQ V      GA+ K     +++  L
Sbjct:   27 RCGHDLFDGEVINATGETLDKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVV--DMLNGAVPKAPFDSWLNESL 139          
BLAST of CF417847 vs. ExPASy Swiss-Prot
Match: ERP38_NEUCR (Protein disulfide-isomerase erp38 OS=Neurospora crassa GN=erp38 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.646e-12
Identity = 40/98 (40.82%), Postives = 54/98 (55.10%), Query Frame = 2
Query:  326 ASSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQ--EYG-DRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREG 610
            A S + ++  S F + VLKS +P LVEF A WCG C+ +AP  E LA   EY  D++ + K+D DA   L + + V G PTL  F    E P   + G
Sbjct:   18 AKSAVLDLIPSNFDDVVLKSGKPTLVEFFAPWCGHCKNLAPVYEELATALEYAKDKVQIAKVDADAERALGKRFGVQGFPTLKFFDGKSEQPVDYKGG 115          
The following BLAST results are available for this feature:
BLAST of CF417847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
THIO_HELPJ9.361e-1335.58Thioredoxin OS=Helicobacter pylori J99 GN=trxA PE=... [more]
THIOT_DROME9.361e-1340.58Thioredoxin-T OS=Drosophila melanogaster GN=TrxT P... [more]
THIO_CHLMU1.597e-1250.00Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV... [more]
THIO2_CHLTE1.597e-1232.67Thioredoxin-2 OS=Chlorobium tepidum GN=trx2 PE=3 S... [more]
TIGA_ASPNG3.557e-1238.39Protein disulfide-isomerase tigA OS=Aspergillus ni... [more]
THIO2_SHIFL3.557e-1233.91Thioredoxin-2 OS=Shigella flexneri GN=trxC PE=3 SV... [more]
THIO2_ECOLI3.557e-1233.91Thioredoxin-2 OS=Escherichia coli (strain K12) GN=... [more]
THIO2_ECOL63.557e-1233.91Thioredoxin-2 OS=Escherichia coli O6 GN=trxC PE=3 ... [more]
THIO2_ECO573.557e-1233.91Thioredoxin-2 OS=Escherichia coli O157:H7 GN=trxC ... [more]
ERP38_NEUCR4.646e-1240.82Protein disulfide-isomerase erp38 OS=Neurospora cr... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-777 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417847 ID=CF417847; Name=CF417847; organism=Citrus sinensis; type=EST; length=720bp
GTTAGTCCTGCGGCTGCTCCGTTTTTGTATCACACAAAACTGAAAACAAT
TCAAAAAGAAAAGAAAATGCTCTAAAAATNTTTAAGCGCTTGCAAAATGG
ACATCCNTCTTCTCCAACTCCACTTTATTGTTCAAACAGCAACCACTGGT
TGCTCCTGTTCGTACAGTTACTGTGACCCACAGGCAACAGAACATCATCA
CCAGCGCTACAACAACAACAACAACGCCGTCAAAGAATCAGCTATTGTTC
GGGTCTCGAACGAACCTCTCACTCAAGTCTTATAATCNTACGCTTCCCAG
GTTGGCAATACGCGTACGCTGCGGTGCGAGCAGTGGCATAACGGAGATTA
CCGAAAGTGAGTTCCCAAACACGGTCTTGAAATCTGAGCGTCCGGTTCTT
GTCGAGTTCGTGGCCAATTGGTGCGGTCCTTGCCGCTTGGTTGCTCCCGC
CGTCGAATGGCTCGCCCAGGAATACGGAGACAGATTGACCGTCGTAAAGA
TTGATCATGACGCAAACCCACAACTAATAGAGGAATACAAAGTTTATGGA
TTGCCGACCTTGATTCTCTTCAAGAATGGACAGGAAGTTCCNGAAAGCAG
GAGGGAAGGTGCNATTACGAAGTTGANGCTTAAAGAGTATATTGATACTC
TTTTAGATTCNATCTCAGTGGCTTAGCCCTCTTTTGAACATGCTCAGCAA
ATTATGCTCATTCTTCCAAC
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