CF417862

Overview
NameCF417862
Unique NameCF417862
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF1_YEAST (ADP-ribosylation factor 1 OS=Saccharomyces cerevisiae GN=ARF1 PE=1 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 1.884e-28
Identity = 58/69 (84.06%), Postives = 65/69 (94.20%), Query Frame = 3
Query:    9 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV 215
            +KLFS LF  KEMRILMVGLD AGKTT+LYKLKLGE++TTIPTIGFNVETV+YKNISFTVWDVGGQD++
Sbjct:    6 SKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRI 74          
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFO (ADP-ribosylation factor 1 OS=Plasmodium falciparum (isolate NF54) GN=ARF1 PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.461e-28
Identity = 59/78 (75.64%), Postives = 72/78 (92.31%), Query Frame = 3
Query:    9 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKVCRFYFNIFS 242
            ++LF+RLF KK++RILMVGLDAAGKTTILYK+KLGE+VTTIPTIGFNVETVE++NISFTVWDVGGQDK+   + + +S
Sbjct:    6 SRLFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYS 83          
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFA (ADP-ribosylation factor 1 OS=Plasmodium falciparum GN=ARF1 PE=2 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 2.461e-28
Identity = 59/78 (75.64%), Postives = 72/78 (92.31%), Query Frame = 3
Query:    9 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKVCRFYFNIFS 242
            ++LF+RLF KK++RILMVGLDAAGKTTILYK+KLGE+VTTIPTIGFNVETVE++NISFTVWDVGGQDK+   + + +S
Sbjct:    6 SRLFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYS 83          
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF_GIALA (ADP-ribosylation factor OS=Giardia lamblia PE=3 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 7.161e-28
Identity = 57/69 (82.61%), Postives = 66/69 (95.65%), Query Frame = 3
Query:    9 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV 215
            +K+F +LF+KKE+RILMVGLDAAGKTTILYKL LGE+VTT+PTIGFNVETVEYKNI+FTVWDVGGQD +
Sbjct:    6 SKIFGKLFSKKEVRILMVGLDAAGKTTILYKLMLGEVVTTVPTIGFNVETVEYKNINFTVWDVGGQDSI 74          
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF2_SCHPO (Probable ADP-ribosylation factor OS=Schizosaccharomyces pombe GN=SPBC1539.08 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.929e-26
Identity = 59/78 (75.64%), Postives = 65/78 (83.33%), Query Frame = 3
Query:    6 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV---CRFYF 230
            F+K FSRLF+ KEMRILM+GLDAAGKTTILYKLKL + V TIPT+GFNVETV YKNI F VWDVGGQDK+    R YF
Sbjct:    9 FSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDVGGQDKIRPLWRHYF 86          
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF6_XENLA (ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf6 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 8.753e-26
Identity = 54/68 (79.41%), Postives = 61/68 (89.71%), Query Frame = 3
Query:   12 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV 215
            K+FS++F  KEMRILM GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDK+
Sbjct:    3 KMFSKIFGNKEMRILMRGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKI 70          
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF3_DROME (ADP-ribosylation factor 3 OS=Drosophila melanogaster GN=Arf51F PE=2 SV=3)

HSP 1 Score: 117.087 bits (292), Expect = 8.753e-26
Identity = 54/68 (79.41%), Postives = 61/68 (89.71%), Query Frame = 3
Query:   12 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV 215
            KL S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDK+
Sbjct:    3 KLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKI 70          
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF6_RAT (ADP-ribosylation factor 6 OS=Rattus norvegicus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.950e-25
Identity = 53/68 (77.94%), Postives = 61/68 (89.71%), Query Frame = 3
Query:   12 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV 215
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDK+
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKI 70          
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF6_PIG (ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.950e-25
Identity = 53/68 (77.94%), Postives = 61/68 (89.71%), Query Frame = 3
Query:   12 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV 215
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDK+
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKI 70          
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF6_MOUSE (ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.950e-25
Identity = 53/68 (77.94%), Postives = 61/68 (89.71%), Query Frame = 3
Query:   12 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV 215
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDK+
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKI 70          
The following BLAST results are available for this feature:
BLAST of CF417862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
ARF1_YEAST1.884e-2884.06ADP-ribosylation factor 1 OS=Saccharomyces cerevis... [more]
ARF1_PLAFO2.461e-2875.64ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]
ARF1_PLAFA2.461e-2875.64ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]
ARF_GIALA7.161e-2882.61ADP-ribosylation factor OS=Giardia lamblia PE=3 SV... [more]
ARF2_SCHPO3.929e-2675.64Probable ADP-ribosylation factor OS=Schizosaccharo... [more]
ARF6_XENLA8.753e-2679.41ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf... [more]
ARF3_DROME8.753e-2679.41ADP-ribosylation factor 3 OS=Drosophila melanogast... [more]
ARF6_RAT1.950e-2577.94ADP-ribosylation factor 6 OS=Rattus norvegicus GN=... [more]
ARF6_PIG1.950e-2577.94ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE... [more]
ARF6_MOUSE1.950e-2577.94ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-792 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417862 ID=CF417862; Name=CF417862; organism=Citrus sinensis; type=EST; length=680bp
TGTCTTTCACCAAGCTTTTCAGCAGGCTTTTTGCTAAGAAAGAGATGAGA
ATTCTCATGGTAGGTCTCGATGCAGCTGGTAAGACTACTATCCTGTACAA
GCTTAAGCTCGGAGAGATCGTCACCACCATTCCTACCATTGGATTTAATG
TAGAGACCGTTGAGTATAAGAACATCAGCTTTACTGTCTGGGATGTCGGG
GGTCAAGACAAGGTATGTAGATTTTATTTTAATATATTCAGCCTGATCTA
GCTTTAGGATGTTTTTATGTTGATGATACTGTTGTTTCCTCTCATCGGTC
ACCAGTGAGTTAATGCATAGGGACAGGTCAGCTCTTTTAAATTATAAATT
CATTTTTTGGCCGTTAGCGTTGCTACCAGCGTATGTACATATGAATGTGT
CTTTTGCCTTGTAACAATGTGTCTCTTGAAGGTTGAGGGTGGTCGACCAT
AGAGTGAAGCATATTGTTTGCCTTTTGTGGTTTTCAAAAGTAAAGCCTTT
TTGTGCATTTGAAGTCTTAGCCTAGTTGTGCAAGGGAGCTGCCCATGGGC
TGGGGCAGGTTGCTGGGTTTCAATTATTAAGTCATGGCAAAGACAGGATT
GAAAGGTGTGATCCTGTTTCCTATATATTGNTCGAGCTTCTGACACATAT
AATTTTGGTCTCCCAGATCCGACCTTTGTG
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