CF417864

Overview
NameCF417864
Unique NameCF417864
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length349
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417864 vs. ExPASy Swiss-Prot
Match: NOP58_YEAS7 (Nucleolar protein 58 OS=Saccharomyces cerevisiae (strain YJM789) GN=NOP58 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.582e-16
Identity = 49/117 (41.88%), Postives = 73/117 (62.39%), Query Frame = 1
Query:    1 YHASLVGQAAPKHKGKISRSLAAKTALAIRCDALGDDQDNS--MGLENRAKLEARLRNLEGKELSRAAGSAKGKPKLEVYDKDRKKGPGAMITAAKTYNPAADSVFGLTENAADGNE 345
            YHASLVGQA  K+KGKI+R LAAK A+++R DAL +D+D+S  +GLE+RAK+E RL  LEG++L       +   K+E             +T A+ YN  AD+    +++ +D ++
Sbjct:  343 YHASLVGQATGKNKGKIARVLAAKAAVSLRYDALAEDRDDSGDIGLESRAKVENRLSQLEGRDLRTTPKVVREAKKVE-------------MTEARAYNADADTAKAASDSESDSDD 446          
BLAST of CF417864 vs. ExPASy Swiss-Prot
Match: NOP58_VANPO (Nucleolar protein 58 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=NOP58 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.067e-16
Identity = 52/117 (44.44%), Postives = 73/117 (62.39%), Query Frame = 1
Query:    1 YHASLVGQAAPKHKGKISRSLAAKTALAIRCDALGDDQDNS--MGLENRAKLEARLRNLEGKELSRAAGSAKGKPKLEVYDKDRKKGPGAMITAAKTYNPAADSVFGLTENAADGNE 345
            YHASLVGQA  K+KGKI+R LAAK A+++R DAL +D+D+S  +GLE RAK+E RL  LEG++L       +   K+E             IT A+ YN  AD+   + E+A+D ++
Sbjct:  343 YHASLVGQATGKNKGKIARVLAAKAAVSLRYDALAEDRDDSGDIGLEARAKVENRLSQLEGRDLRTTPKVVREAKKVE-------------ITEARAYNADADTA-AVEESASDSDD 445          
BLAST of CF417864 vs. ExPASy Swiss-Prot
Match: NOP58_PICST (Nucleolar protein 58 OS=Pichia stipitis GN=NOP58 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.604e-16
Identity = 48/104 (46.15%), Postives = 69/104 (66.35%), Query Frame = 1
Query:    1 YHASLVGQAAPKHKGKISRSLAAKTALAIRCDALGDDQDNS--MGLENRAKLEARLRNLEGKELSRAAGSAKGKPKLEVYDKDRKKGPGAMITAAKTYNPAADS 306
            YHASLVGQA+ K+KGKI+R LAAK A+A+R D+L +++D+S   GLE RAK+E+RL  LEG++L   +   + +PK++             IT A+ YN  AD+
Sbjct:  343 YHASLVGQASGKNKGKIARVLAAKAAVALRYDSLAEERDDSGDFGLEVRAKVESRLSALEGRDLRTTSKVVREQPKVD-------------ITEARAYNADADA 433          
BLAST of CF417864 vs. ExPASy Swiss-Prot
Match: NOP58_DEBHA (Nucleolar protein 58 OS=Debaryomyces hansenii GN=NOP58 PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.026e-15
Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = 1
Query:    1 YHASLVGQAAPKHKGKISRSLAAKTALAIRCDALGDDQDNS--MGLENRAKLEARLRNLEGKELSRAAGSAKGKPKLEVYDKDRKKGPGAMITAAKTYNPAADS 306
            YHASLVGQA+ K+KGKI+R LAAK A+A+R D+L +D+D+S   GL  R K+E+RL  LEG++L   A   + +PK++             IT A+ YN  AD+
Sbjct:  343 YHASLVGQASGKNKGKIARVLAAKAAVALRYDSLAEDRDDSGDFGLSVRTKVESRLSALEGRDLRTTAKVIREQPKVD-------------ITEARAYNADADA 433          
BLAST of CF417864 vs. ExPASy Swiss-Prot
Match: NOP58_ASHGO (Nucleolar protein 58 OS=Ashbya gossypii GN=NOP58 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.026e-15
Identity = 46/101 (45.54%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    1 YHASLVGQAAPKHKGKISRSLAAKTALAIRCDALGDDQDNS--MGLENRAKLEARLRNLEGKELSRAAGSAKGKPKLEVYDKDRKKGPGAMITAAKTYNPA 297
            YHASLVGQA  K+KGKI+R LAAK A+++R DAL +D+D+S  +GLE RAK+E+RL  LEG++L      ++   K+E+ +           TA     PA
Sbjct:  343 YHASLVGQATGKNKGKIARVLAAKAAVSLRYDALAEDRDDSGDIGLEARAKVESRLSQLEGRDLRTTPKVSRDAKKIEISEARAYNADADAATAPADSTPA 443          
BLAST of CF417864 vs. ExPASy Swiss-Prot
Match: NOP58_LODEL (Nucleolar protein 58 OS=Lodderomyces elongisporus GN=NOP58 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.285e-15
Identity = 44/117 (37.61%), Postives = 74/117 (63.25%), Query Frame = 1
Query:    1 YHASLVGQAAPKHKGKISRSLAAKTALAIRCDALGDDQD--NSMGLENRAKLEARLRNLEGKELSRAAGSAKGKPKLEVYDKDRKKGPGAMITAAKTYNPAADSVFGLTENAADGNE 345
            YHASLVGQA+ K+KG+I+R+LAAK AL++R D   +++D  +S GL+NR K+E+RL  LEG+++   +  ++ + K++             IT A+ YN  AD+   + +  +D ++
Sbjct:  343 YHASLVGQASGKNKGRIARTLAAKAALSVRYDCFDEERDDSDSFGLDNRGKVESRLSKLEGRDMRTTSKVSRQQGKID-------------ITEARAYNADADAPSAVADADSDDDD 446          
BLAST of CF417864 vs. ExPASy Swiss-Prot
Match: NOP58_CANGA (Nucleolar protein 58 OS=Candida glabrata GN=NOP58 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.898e-15
Identity = 51/117 (43.59%), Postives = 71/117 (60.68%), Query Frame = 1
Query:    1 YHASLVGQAAPKHKGKISRSLAAKTALAIRCDALGDDQDNS--MGLENRAKLEARLRNLEGKELSRAAGSAKGKPKLEVYDKDRKKGPGAMITAAKTYNPAADSVFGLTENAADGNE 345
            YHASLVGQA+ ++KGKI+R LAAK A+A+R DAL +D+D+S  +GLE RAK+E RL  +EG++L       +   K+E             +T A+ YN  AD     T  AAD ++
Sbjct:  343 YHASLVGQASGRNKGKIARVLAAKAAVALRYDALAEDRDDSGDIGLEVRAKVENRLSQIEGRDLRTTPKVVREAKKVE-------------MTEARAYNADAD-----TAAAADSDD 441          
BLAST of CF417864 vs. ExPASy Swiss-Prot
Match: NOP58_YARLI (Nucleolar protein 58 OS=Yarrowia lipolytica GN=NOP58 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.934e-14
Identity = 47/117 (40.17%), Postives = 72/117 (61.54%), Query Frame = 1
Query:    1 YHASLVGQAAPKHKGKISRSLAAKTALAIRCDALGDDQDN--SMGLENRAKLEARLRNLEGKELSRAAGSAKGKPKLEVYDKDRKKGPGAMITAAKTYNPAADSVFGLTENAADGNE 345
            YHASL+GQA+ K+KGKI+R LAAK ++++R DA  +++++   +G++NR K+E RLR LEGKE+        G  + +V   + KK     ++  K YN  AD+V   T  A   +E
Sbjct:  343 YHASLIGQASGKNKGKIARMLAAKASVSMRYDAFAEEREDVPILGIDNRIKVENRLRQLEGKEI-------VGTVRPDVNKIEHKK---VDLSTGKQYNADADTVGNTTAGADSDDE 449          
BLAST of CF417864 vs. ExPASy Swiss-Prot
Match: NOP58_PICGU (Nucleolar protein 58 OS=Pichia guilliermondii GN=NOP58 PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.793e-13
Identity = 38/79 (48.10%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    1 YHASLVGQAAPKHKGKISRSLAAKTALAIRCDALGDDQDNS--MGLENRAKLEARLRNLEGKELSRAAGSAKGKPKLEV 231
            YHASLVGQA  K+KGKI+R LAAK A+A+R D+L +++D+S   G   RAK+E+RL  LEG+++   +   + + K+E+
Sbjct:  343 YHASLVGQATGKNKGKIARVLAAKAAVALRYDSLSEERDDSGDFGFSVRAKVESRLSALEGRDMRTTSKVVREQQKIEI 421          
BLAST of CF417864 vs. ExPASy Swiss-Prot
Match: NOP58_USTMA (Nucleolar protein 58 OS=Ustilago maydis GN=NOP58 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.061e-12
Identity = 52/123 (42.28%), Postives = 70/123 (56.91%), Query Frame = 1
Query:    1 YHASLVGQAAPKHKGKISRSLAAKTALAIRCDALGDDQDNS------MGLENRAKLEARLRNLE---GKELSRAAGSAKGKPKLEVYDKDRKKGPGAMITAAKTYNPAADSVFGLTENAADGN 342
            YH+SLVGQA  K KGK++R +A K AL+IR DAL D    S      +G+E RAKLE+RLR LE   G    R+A +A G       D+  K+    M    ++YN AAD+  G ++ A+  N
Sbjct:  353 YHSSLVGQAPQKLKGKMARMVATKAALSIRLDALADADTKSDEGAPTVGIEARAKLESRLRALEMQSGLSGMRSARNAAG-------DQGHKQKGFQMEAGGRSYNAAADAA-GPSDMASAAN 467          
The following BLAST results are available for this feature:
BLAST of CF417864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
NOP58_YEAS71.582e-1641.88Nucleolar protein 58 OS=Saccharomyces cerevisiae (... [more]
NOP58_VANPO2.067e-1644.44Nucleolar protein 58 OS=Vanderwaltozyma polyspora ... [more]
NOP58_PICST4.604e-1646.15Nucleolar protein 58 OS=Pichia stipitis GN=NOP58 P... [more]
NOP58_DEBHA1.026e-1546.15Nucleolar protein 58 OS=Debaryomyces hansenii GN=N... [more]
NOP58_ASHGO1.026e-1545.54Nucleolar protein 58 OS=Ashbya gossypii GN=NOP58 P... [more]
NOP58_LODEL2.285e-1537.61Nucleolar protein 58 OS=Lodderomyces elongisporus ... [more]
NOP58_CANGA3.898e-1543.59Nucleolar protein 58 OS=Candida glabrata GN=NOP58 ... [more]
NOP58_YARLI1.934e-1440.17Nucleolar protein 58 OS=Yarrowia lipolytica GN=NOP... [more]
NOP58_PICGU2.793e-1348.10Nucleolar protein 58 OS=Pichia guilliermondii GN=N... [more]
NOP58_USTMA1.061e-1242.28Nucleolar protein 58 OS=Ustilago maydis GN=NOP58 P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-794 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417864 ID=CF417864; Name=CF417864; organism=Citrus sinensis; type=EST; length=349bp
TACCATGCGTCCCTTGTTGGTCAGGCAGCCCCAAAGCACAAGGGCAAAAT
TTCCCGGTCACTTGCGGCCAAAACTGCATTAGCAATTCGATGTGATGCTC
TTGGTGATGACCAAGATAACTCTATGGGACTGGAGAATCGTGCCAAGCTT
GAAGCACGGCTAAGGAATCTTGAAGGCAAAGAATTGAGTCGTGCTGCTGG
GTCTGCTAAAGGAAAGCCTAAGCTTGAAGTTTATGACAAGGACCGAAAGA
AGGGGCCTGGGGCAATGATAACTGCTGCCAAGACTTATAATCCTGCAGCA
GATTCCGTTTTTGGTCTAACGGAAAATGCTGCTGATGGAAATGAGGTAA
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