CF417867
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.970e-23 Identity = 72/170 (42.35%), Postives = 90/170 (52.94%), Query Frame = 3 Query: 3 ENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467 E + +E E+IH RWAML G + PE L G W +A GG YLGNP V ++ I + + + +E R DP YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GP+ENLA H+ADP NN Sbjct: 88 ETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLADHIADPVANN 252
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.573e-23 Identity = 75/170 (44.12%), Postives = 88/170 (51.76%), Query Frame = 3 Query: 3 ENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467 E R +E E+IH RWAML G L PE L G W +A GG YLGNP V ++ I + + + VE R DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLENL HLADP NN Sbjct: 92 ETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPI---YPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLNDHLADPVANN 256
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.573e-23 Identity = 72/170 (42.35%), Postives = 93/170 (54.71%), Query Frame = 3 Query: 3 ENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEK------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467 E + +E E+IH RWAML G + PE L G W +A GG YLGNP V ++ +I + + + VE R DP YPGG+FDPLG ++DP++ E KVKE+KNGRLA+ + GF V Q+ G GPLENLA HLADP +NN Sbjct: 88 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDP---LYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 252
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.573e-23 Identity = 61/165 (36.97%), Postives = 90/165 (54.55%), Query Frame = 3 Query: 3 ENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 470 E+L + ++++++ RWAML V G+L+PE L + A EW +PG + + + + +E +++ S+ +DP K YPG F+PL F+ E K KE+ NGRLA+LAF+GF VQ + + G GP ENL HLADPWHN I Sbjct: 66 EDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVHMSSTYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGRVFNPLNFAP-----LENKEKELANGRLAMLAFLGFLVQHNVH-GKGPFENLQQHLADPWHNTI 224
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 3.360e-23 Identity = 69/169 (40.83%), Postives = 92/169 (54.44%), Query Frame = 3 Query: 3 ENLERYKESELIHCRWAMLAVPGILVPEAL--------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467 E ++Y+E E+IH RWA+L GIL PE L G W +A GG YLG+P + + L ++ + + +E R + P + YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP++NLA HLADP NN Sbjct: 79 ETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGG-LDYLGSPALIHAQNIVATLAVQVVLMGLIEGYR-VNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFV-QAIVTGKGPIQNLADHLADPGTNN 244
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 3.360e-23 Identity = 71/170 (41.76%), Postives = 91/170 (53.53%), Query Frame = 3 Query: 3 ENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467 E + +E E+IH RWAML G + PE L G W +A GG YLGNP + ++ I + + + VE R DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLENLA H+ADP +NN Sbjct: 86 ETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHIADPVNNN 250
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 5.732e-23 Identity = 71/170 (41.76%), Postives = 88/170 (51.76%), Query Frame = 3 Query: 3 ENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467 E R +E E+IH RWAML G PE L G W +A GG YLGNP + ++ I + + + FVE R DP YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G GP++NL H+ADP NN Sbjct: 89 ETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGG-LDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIQNLYDHVADPVANN 253
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 7.486e-23 Identity = 69/169 (40.83%), Postives = 88/169 (52.07%), Query Frame = 3 Query: 3 ENLERYKESELIHCRWAMLAVPGILVPEAL--------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 464 + RY+E ELIH RWA+L GIL PE L G W +A GG YLGN + ++ L ++ + + E R+ D YPGG FDPLG + DP F E KVKEIKNGRLA+ + +GF V Q+ G GP++NL HLADP N Sbjct: 74 QTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGG-LNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFV-QAIVTGKGPVQNLTDHLADPTVN 240
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 7.486e-23 Identity = 70/170 (41.18%), Postives = 90/170 (52.94%), Query Frame = 3 Query: 3 ENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467 E + +E E+IH RWAML G + PE L G W +A GG YLGNP + ++ I + + + +E R DP YPGG FDPLG + DP+ F + KVKE+KNGRLA+ + GF V Q+ G GPLENLA HLADP +NN Sbjct: 89 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDP---LYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 253
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 7.486e-23 Identity = 71/170 (41.76%), Postives = 90/170 (52.94%), Query Frame = 3 Query: 3 ENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467 E + +E E+IH RWAML G + PE L G W +A GG YLGNP + ++ I + + + VE R DP YPGG+FDPLG + DP+ E KVKE+KNGRLA+ + GF V Q+ G GPLENLA HLADP +NN Sbjct: 80 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 244 The following BLAST results are available for this feature:
BLAST of CF417867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 81
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417867 ID=CF417867; Name=CF417867; organism=Citrus sinensis; type=EST; length=618bpback to top |