CF417870

Overview
NameCF417870
Unique NameCF417870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417870 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 3.761e-67
Identity = 141/237 (59.49%), Postives = 157/237 (66.24%), Query Frame = 3 
Query:    3 YHDPPPAPLIDAEELTQWSFYRATIAEFIATLLFLYITVLTVIGYKSQTDANHGGDEMWWCWHSGHRLGLWWHDXXXXXXXXWY---LWXTH*PXGDIWAVLGAARCHWCEP*CTWLAXCLGAICGCGLVKAFQKSYYXXYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRXAXDSHVPVLAPLPIGFAVFMVHLATIPVTGTGIXPARSLGAAVIYSKEKAWDDQWI 704
            Y DPPPAPL D  EL  WSFYRA IAEFIATLLFLYITV TVIGYK Q+ A+  G            LG+ W          +    +   H      + +L A +          +A CLG I G G+VK   K  Y   GGGAN +A GYSTGT LGAEIIGTFVLVYTVFSATDPKR A DSHVPVLAPLPIGFAVFMVHLATIP+TGTGI PARS+GAAVIY+++KAWDD WI
Sbjct:   17 YTDPPPAPLFDVGELRLWSFYRALIAEFIATLLFLYITVATVIGYKVQSSADQCGGV--------GTLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVSVIRAVMYIVAQCLGGIVGVGIVKGIMKHQYNANGGGANMVASGYSTGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSIGAAVIYNQKKAWDDHWI 245
[Close]
BLAST of CF417870 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.438e-66
Identity = 134/234 (57.26%), Postives = 153/234 (65.38%), Query Frame = 3 
Query:    3 YHDPPPAPLIDAEELTQWSFYRATIAEFIATLLFLYITVLTVIGYKSQTDANHGGDEMWWCWHSGHRLGLWWHDXXXXXXXXWYLWXTH*PXGDIWAVLGAARCHWCEP*CTWLAXCLGAICGCGLVKAFQKSYYXXYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRXAXDSHVPVLAPLPIGFAVFMVHLATIPVTGTGIXPARSLGAAVIYSKEKAWDDQWI 704
            Y DPPPAP  D  EL  WSF+RA IAEFIATLLFLYITV TVIGYK +TD       +   W  G  + +  +               H      + +  A +          +A C GAICG GLVKAF K  Y  +GGGAN +A GY+ GT  GAE+IGTFVLVYTVFSATDPKR A DSHVP+LAPLPIGFAVFMVHLATIP+TGTGI PARS GAAVIY+K++ WDD WI
Sbjct:   19 YVDPPPAPFFDMGELKLWSFWRAAIAEFIATLLFLYITVATVIGYKKETDPCASVGLLGIAWSFGGMIFVLVYCTAGISGG-------HINPAVTFGLFLARKVSLLRALVYMIAQCAGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTAFGAELIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKKRVWDDHWI 245
[Close]
BLAST of CF417870 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.252e-62
Identity = 131/236 (55.51%), Postives = 156/236 (66.10%), Query Frame = 3 
Query:    3 YHDPPPAPLIDAEELTQWSFYRATIAEFIATLLFLYITVLTVIGYKSQTD--ANHGGDEMWWCWHSGHRLGLWWHDXXXXXXXXWYLWXTH*PXGDIWAVLGAARCHWCEP*CTWLAXCLGAICGCGLVKAFQKSYYXXYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRXAXDSHVPVLAPLPIGFAVFMVHLATIPVTGTGIXPARSLGAAVIYSKEKAWDDQWI 704
            Y +PPPAPL +  EL+ WSFYRA IAEFIAT LFLYITVLTV+G K   +  A+ G   + W +  G    L +                H      + +  A +          +  CLGAICG G+VK FQ + Y   GGGAN +A GY+ G+GLGAEIIGTFVLVYTVFSATD KR A DSHVP+LAPLPIGFAVF+VHLATIP+TGTGI PARSLGAA+IY+K+ +WDD WI
Sbjct:   32 YKEPPPAPLFEPGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVKRAPNMCASVGIQGIAWAF-GGMIFALVYCTAGISGG--------HINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAGVVKGFQPTPYQTLGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWI 258
[Close]
BLAST of CF417870 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.643e-62
Identity = 131/236 (55.51%), Postives = 155/236 (65.68%), Query Frame = 3 
Query:    3 YHDPPPAPLIDAEELTQWSFYRATIAEFIATLLFLYITVLTVIGYKSQTD--ANHGGDEMWWCWHSGHRLGLWWHDXXXXXXXXWYLWXTH*PXGDIWAVLGAARCHWCEP*CTWLAXCLGAICGCGLVKAFQKSYYXXYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRXAXDSHVPVLAPLPIGFAVFMVHLATIPVTGTGIXPARSLGAAVIYSKEKAWDDQWI 704
            Y +PPPAP  +  EL+ WSFYRA IAEFIAT LFLYITVLTV+G K   +  A+ G   + W +  G    L +                H      + +  A +          +  CLGAICG G+VK FQ + Y   GGGAN +A GY+ G+GLGAEIIGTFVLVYTVFSATD KR A DSHVP+LAPLPIGFAVF+VHLATIP+TGTGI PARSLGAA+IY+K+ AWDD WI
Sbjct:   31 YKEPPPAPFFEPGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVKRAPNMCASVGIQGIAWAF-GGMIFALVYCTAGISGG--------HINPAVTFGLFLARKLSLTRAVFYIVMQCLGAICGAGVVKGFQPNPYQTLGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWI 257
[Close]
BLAST of CF417870 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.116e-62
Identity = 129/236 (54.66%), Postives = 154/236 (65.25%), Query Frame = 3 
Query:    3 YHDPPPAPLIDAEELTQWSFYRATIAEFIATLLFLYITVLTVIGYKSQTD--ANHGGDEMWWCWHSGHRLGLWWHDXXXXXXXXWYLWXTH*PXGDIWAVLGAARCHWCEP*CTWLAXCLGAICGCGLVKAFQKSYYXXYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRXAXDSHVPVLAPLPIGFAVFMVHLATIPVTGTGIXPARSLGAAVIYSKEKAWDDQWI 704
            Y +PPPAPL +  EL  WSF+RA IAEFIAT LFLYITVLTV+G K   +  A+ G   + W +  G    L +                H      + +  A +          +  CLGAICG G+VK FQ   Y   GGGAN +A GY+ G+GLGAEIIGTFVLVYTVFSATD KR A DSHVP+LAPLPIGFAVF+VHLATIP+TGTGI PARSLGAA+I++K+ AWDD W+
Sbjct:   31 YKEPPPAPLFEPGELASWSFWRAGIAEFIATFLFLYITVLTVMGVKRSPNMCASVGIQGIAWAF-GGMIFALVYCTAGISGG--------HINPAVTFGLFLARKLSLTRAVYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTIAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDNAWDDHWV 257
[Close]
BLAST of CF417870 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 236.498 bits (602), Expect = 1.060e-61
Identity = 129/236 (54.66%), Postives = 152/236 (64.41%), Query Frame = 3 
Query:    3 YHDPPPAPLIDAEELTQWSFYRATIAEFIATLLFLYITVLTVIGYKSQTD--ANHGGDEMWWCWHSGHRLGLWWHDXXXXXXXXWYLWXTH*PXGDIWAVLGAARCHWCEP*CTWLAXCLGAICGCGLVKAFQKSYYXXYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRXAXDSHVPVLAPLPIGFAVFMVHLATIPVTGTGIXPARSLGAAVIYSKEKAWDDQWI 704
            Y +PPPAPL +  EL  WSFYRA IAEF+AT LFLYITVLTV+G  + T   A  G   + W +  G    L +                H      + +  A +          +  CLGAICG G+VK FQK  Y   GGGAN +A GY+ G GLGAEI+GTF+LVYTVFSATD KR A DSHVP+LAPLPIGFAVF+VHLATIP+TGTGI PARSLGAA+IY++  AWDD WI
Sbjct:   33 YKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVNNSTSKCATVGIQGIAWSF-GGMIFALVYCTAGISGG--------HINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQKGLYETTGGGANVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRGHAWDDHWI 259
[Close]
BLAST of CF417870 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 1.384e-61
Identity = 129/236 (54.66%), Postives = 153/236 (64.83%), Query Frame = 3 
Query:    3 YHDPPPAPLIDAEELTQWSFYRATIAEFIATLLFLYITVLTVIGYKSQTD--ANHGGDEMWWCWHSGHRLGLWWHDXXXXXXXXWYLWXTH*PXGDIWAVLGAARCHWCEP*CTWLAXCLGAICGCGLVKAFQKSYYXXYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRXAXDSHVPVLAPLPIGFAVFMVHLATIPVTGTGIXPARSLGAAVIYSKEKAWDDQWI 704
            Y +PPPAP  +  EL  WSFYRA IAEFIAT LFLY+TVLTV+G K   +  A+ G   + W +  G    L +                H      + +  A +          +  CLGAICG G+VK FQ   Y   GGGAN +A GY+ G+GLGAEI+GTFVLVYTVFSATD KR A DSHVP+LAPLPIGFAVF+VHLATIP+TGTGI PARSLGAA+IY+K+ AWDD WI
Sbjct:   32 YKEPPPAPFFEPGELKSWSFYRAGIAEFIATFLFLYVTVLTVMGVKRAPNMCASVGIQGIAWAF-GGMIFALVYCTAGISGG--------HINPAVTFGLFLARKLSLTRALFYIVMQCLGAICGAGVVKGFQPGLYQTNGGGANVVAHGYTKGSGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWI 258
[Close]
BLAST of CF417870 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.808e-61
Identity = 126/236 (53.39%), Postives = 153/236 (64.83%), Query Frame = 3 
Query:    3 YHDPPPAPLIDAEELTQWSFYRATIAEFIATLLFLYITVLTVIGYKSQTD--ANHGGDEMWWCWHSGHRLGLWWHDXXXXXXXXWYLWXTH*PXGDIWAVLGAARCHWCEP*CTWLAXCLGAICGCGLVKAFQKSYYXXYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRXAXDSHVPVLAPLPIGFAVFMVHLATIPVTGTGIXPARSLGAAVIYSKEKAWDDQWI 704
            Y +PPPAPL +AEELT WSFYRA IAEF+AT LFLYI++LTV+G    +   A  G   + W +  G    L +                H      + +  A +          +  CLGAICG G+VK FQ+  Y   GGGAN +  GY+ G GLGAEI+GTFVLVYTVFSATD KR A DSHVP+LAPLPIGFAVF+VHLATIP+TGTGI PARSLGAA++Y++  AW+D WI
Sbjct:   33 YKEPPPAPLFEAEELTSWSFYRAGIAEFVATFLFLYISILTVMGVSKSSSKCATVGIQGIAWSF-GGMIFALVYCTAGISGG--------HINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQEGLYMGAGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVYNRSHAWNDHWI 259
[Close]
BLAST of CF417870 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.361e-61
Identity = 128/236 (54.24%), Postives = 154/236 (65.25%), Query Frame = 3 
Query:    3 YHDPPPAPLIDAEELTQWSFYRATIAEFIATLLFLYITVLTVIGYKSQTD--ANHGGDEMWWCWHSGHRLGLWWHDXXXXXXXXWYLWXTH*PXGDIWAVLGAARCHWCEP*CTWLAXCLGAICGCGLVKAFQKSYYXXYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRXAXDSHVPVLAPLPIGFAVFMVHLATIPVTGTGIXPARSLGAAVIYSKEKAWDDQWI 704
            Y +PPPAP  +  EL+ WSF+RA IAEFIAT LFLYITVLTV+G K   +  A+ G   + W +  G    L +                H      + +  A +          +  CLGAICG G+VK FQ   Y   GGGAN +A GY+ G+GLGAEIIGTFVLVYTVFSATD KR A DSHVP+LAPLPIGFAVF+VHLATIP+TGTGI PARSLGAA+IY+K+ +WDD W+
Sbjct:   31 YKEPPPAPFFEPGELSSWSFWRAGIAEFIATFLFLYITVLTVMGVKRSPNMCASVGIQGIAWAF-GGMIFALVYCTAGISGG--------HINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWV 257
[Close]
BLAST of CF417870 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.361e-61
Identity = 128/236 (54.24%), Postives = 154/236 (65.25%), Query Frame = 3 
Query:    3 YHDPPPAPLIDAEELTQWSFYRATIAEFIATLLFLYITVLTVIGYKSQTD--ANHGGDEMWWCWHSGHRLGLWWHDXXXXXXXXWYLWXTH*PXGDIWAVLGAARCHWCEP*CTWLAXCLGAICGCGLVKAFQKSYYXXYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRXAXDSHVPVLAPLPIGFAVFMVHLATIPVTGTGIXPARSLGAAVIYSKEKAWDDQWI 704
            Y +PPPAP  +  EL+ WSF+RA IAEFIAT LFLYITVLTV+G K   +  A+ G   + W +  G    L +                H      + +  A +          +  CLGAICG G+VK FQ   Y   GGGAN +A GY+ G+GLGAEIIGTFVLVYTVFSATD KR A DSHVP+LAPLPIGFAVF+VHLATIP+TGTGI PARSLGAA+IY+K+ +WDD W+
Sbjct:   31 YKEPPPAPFFEPGELSSWSFWRAGIAEFIATFLFLYITVLTVMGVKRSPNMCASVGIQGIAWAF-GGMIFALVYCTAGISGG--------HINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWV 257
The following BLAST results are available for this feature:
BLAST of CF417870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
PIP26_ORYSJ3.761e-6759.49Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP1_ATRCA2.438e-6657.26Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP14_ARATH1.252e-6255.51Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP13_ARATH3.643e-6255.51Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP12_ARATH8.116e-6254.66Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
PIP12_ORYSJ1.060e-6154.66Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP15_ARATH1.384e-6154.66Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP15_MAIZE1.808e-6153.39Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
PIP11_VICFA2.361e-6154.24Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ARATH2.361e-6154.24Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-800 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417870 ID=CF417870; Name=CF417870; organism=Citrus sinensis; type=EST; length=705bp
ATTACCACGACCCTCCTCCAGCTCCATTGATCGATGCCGAGGAGCTCACC
CAATGGTCATTTTACAGGGCTACTATAGCTGAGTTCATCGCCACGCTCTT
GTTTTTGTACATTACTGTGCTGACAGTGATTGGTTACAAGAGCCAGACTG
ACGCCAACCACGGCGGTGATGAGATGTGGTGGTGTTGGCATTCTGGGCAT
CGCTTGGGCCTTTGGTGGCATGATCTTTGTTCTTGTTTACTGCNCTGCTG
GTATCTCTGGNGGACACATTAACCCGNCGGNGACATTTGGGCTGTTCTTG
GCGCGGCAAGGTGTCACTGGTGCGAGCCGTAATGTACATGGCTGGCTCAN
TGTTTGGGAGCCATATGTGGCTGCGGGCTCGTTAAGGCTTTCCAGAAGTC
TTACTACNCNANATACGGCGGNGGAGCCAATGAGCTCGCTGATGGGTACA
GCACTGGCACTGGATTGGGTGCTGAGATCATCGGTACCTTTGTTCTTGTC
TACACTGTTTTCTCCGCCACTGATCCCAAGAGANATGCTANGGACTCCCA
CGTTCCCGTCTTGGCGCCATTGCCNATTGGATTTGCTGTGTTCATGGTTC
ACTTGGCTACGATCCCTGTCACTGGAACTGGCATCNACCCCGCTAGAAGT
TTGGGAGCTGCAGTGATTTACAGCAAGGAGAAGGCTTGGGATGATCAATG
GATCT
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