CF417871
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417871 vs. ExPASy Swiss-Prot
Match: TBB_POLAG (Tubulin beta chain OS=Polytomella agilis GN=TUBB1 PE=3 SV=1) HSP 1 Score: 274.633 bits (701), Expect = 4.386e-112 Identity = 127/141 (90.07%), Postives = 135/141 (95.74%), Query Frame = 2 Query: 32 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGG 454 MREI+HIQGGQCGNQIGAKFWEV+ DEHGID TG GDSDLQLERINVY+NEA+G RYVPRA+LMDLEPGTMDSVRSGP+GQIFRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE+CDCLQGFQVCHSLGG Sbjct: 1 MREIVHIQGGQCGNQIGAKFWEVVSDEHGIDPTGTALGDSDLQLERINVYFNEATGSRYVPRAILMDLEPGTMDSVRSGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQVCHSLGG 141 HSP 2 Score: 150.214 bits (378), Expect = 4.386e-112 Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 3 Query: 453 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT 674 GGTGSGMGTLLISKIREEYPDRMMLTFSV PSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT Sbjct: 141 GGTGSGMGTLLISKIREEYPDRMMLTFSVVPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT 214
BLAST of CF417871 vs. ExPASy Swiss-Prot
Match: TBB4_MAIZE (Tubulin beta-4 chain OS=Zea mays GN=TUBB4 PE=2 SV=2) HSP 1 Score: 270.781 bits (691), Expect = 9.742e-112 Identity = 127/143 (88.81%), Postives = 134/143 (93.71%), Query Frame = 2 Query: 32 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSD--LQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGG 454 MREILHIQGGQCGNQIGAKFWEVIC EH +D TG+YSG S L+LERINVYYNEA GGRYVPRAVLMDLEPGTM+S+R+GPFG IFRPDNFV+GQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGG Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHCVDSTGRYSGTSSQQLELERINVYYNEAGGGRYVPRAVLMDLEPGTMESIRAGPFGGIFRPDNFVYGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGG 143 HSP 2 Score: 152.91 bits (385), Expect = 9.742e-112 Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 3 Query: 453 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT 674 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT Sbjct: 143 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT 216
BLAST of CF417871 vs. ExPASy Swiss-Prot
Match: TBB_TETTH (Tubulin beta chain OS=Tetrahymena thermophila GN=BTU1 PE=1 SV=1) HSP 1 Score: 277.33 bits (708), Expect = 2.824e-111 Identity = 128/141 (90.78%), Postives = 135/141 (95.74%), Query Frame = 2 Query: 32 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGG 454 MREI+HIQGGQCGNQIGAKFWEVI DEHGID TG Y GDSDLQLERINVYYNEA+GGRYVPRA+LMDLEPGTMDSVR+GPFGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQ+ HSLGG Sbjct: 1 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGG 141 HSP 2 Score: 144.821 bits (364), Expect = 2.824e-111 Identity = 69/74 (93.24%), Postives = 72/74 (97.30%), Query Frame = 3 Query: 453 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT 674 GGTGSGMGTLLISK+REEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVENADECMV+DNEALYDICFRT Sbjct: 141 GGTGSGMGTLLISKVREEYPDRIMETFSVVPSPKVSDTVVEPYNATLSVHQLVENADECMVIDNEALYDICFRT 214
BLAST of CF417871 vs. ExPASy Swiss-Prot
Match: TBB_TETPY (Tubulin beta chain OS=Tetrahymena pyriformis GN=BETA-TT1 PE=3 SV=1) HSP 1 Score: 277.33 bits (708), Expect = 2.824e-111 Identity = 128/141 (90.78%), Postives = 135/141 (95.74%), Query Frame = 2 Query: 32 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGG 454 MREI+HIQGGQCGNQIGAKFWEVI DEHGID TG Y GDSDLQLERINVYYNEA+GGRYVPRA+LMDLEPGTMDSVR+GPFGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQ+ HSLGG Sbjct: 1 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGG 141 HSP 2 Score: 144.821 bits (364), Expect = 2.824e-111 Identity = 69/74 (93.24%), Postives = 72/74 (97.30%), Query Frame = 3 Query: 453 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT 674 GGTGSGMGTLLISK+REEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVENADECMV+DNEALYDICFRT Sbjct: 141 GGTGSGMGTLLISKVREEYPDRIMETFSVVPSPKVSDTVVEPYNATLSVHQLVENADECMVIDNEALYDICFRT 214
BLAST of CF417871 vs. ExPASy Swiss-Prot
Match: TBB1_PARTE (Tubulin beta chain OS=Paramecium tetraurelia GN=bPT2 PE=3 SV=1) HSP 1 Score: 277.33 bits (708), Expect = 2.824e-111 Identity = 128/141 (90.78%), Postives = 135/141 (95.74%), Query Frame = 2 Query: 32 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGG 454 MREI+HIQGGQCGNQIGAKFWEVI DEHGID TG Y GDSDLQLERINVYYNEA+GGRYVPRA+LMDLEPGTMDSVR+GPFGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQ+ HSLGG Sbjct: 1 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGG 141 HSP 2 Score: 144.821 bits (364), Expect = 2.824e-111 Identity = 69/74 (93.24%), Postives = 72/74 (97.30%), Query Frame = 3 Query: 453 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT 674 GGTGSGMGTLLISK+REEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVENADECMV+DNEALYDICFRT Sbjct: 141 GGTGSGMGTLLISKVREEYPDRIMETFSVVPSPKVSDTVVEPYNATLSVHQLVENADECMVIDNEALYDICFRT 214
BLAST of CF417871 vs. ExPASy Swiss-Prot
Match: TBB_EUPCR (Tubulin beta chain OS=Euplotes crassus PE=3 SV=1) HSP 1 Score: 276.944 bits (707), Expect = 6.272e-111 Identity = 127/141 (90.07%), Postives = 135/141 (95.74%), Query Frame = 2 Query: 32 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGG 454 MREI+H+QGGQCGNQIGAKFWEVI DEHG+D TG Y GDSDLQLERINVYYNEA+GGRYVPRAVLMDLEPGTMDSVR+GPFGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQ+ HSLGG Sbjct: 1 MREIVHVQGGQCGNQIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGG 141 HSP 2 Score: 144.05 bits (362), Expect = 6.272e-111 Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 3 Query: 453 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT 674 GGTGSGMGTLLISKIREEYPDR+M TFSVFPSPKVSDTVVEPYNATLSVHQLVENADE MV+DNEALYDICFRT Sbjct: 141 GGTGSGMGTLLISKIREEYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVMVIDNEALYDICFRT 214
BLAST of CF417871 vs. ExPASy Swiss-Prot
Match: TBB_NAEGR (Tubulin beta chain OS=Naegleria gruberi PE=2 SV=1) HSP 1 Score: 275.018 bits (702), Expect = 8.183e-111 Identity = 126/141 (89.36%), Postives = 135/141 (95.74%), Query Frame = 2 Query: 32 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGG 454 MREI+HIQ GQCGNQIGAKFWEVI DEHG+D TG Y GDSDLQLERINVYYNEA+GGRYVPRA+LMDLEPGTMDSVR+GP+GQIFRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE+CDCLQGFQ+ HSLGG Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGVDPTGAYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQIAHSLGG 141 HSP 2 Score: 145.591 bits (366), Expect = 8.183e-111 Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 3 Query: 453 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT 674 GGTGSGMGTLLISKIREEYPDRMM+TFSVFPSPKVSDTVVEPYNATLSVHQLVENADE M +DNEALYDICFRT Sbjct: 141 GGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVMCIDNEALYDICFRT 214
BLAST of CF417871 vs. ExPASy Swiss-Prot
Match: TBB1_SOYBN (Tubulin beta-1 chain OS=Glycine max GN=TUBB1 PE=3 SV=1) HSP 1 Score: 276.559 bits (706), Expect = 1.393e-110 Identity = 126/141 (89.36%), Postives = 134/141 (95.04%), Query Frame = 2 Query: 32 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGG 454 MREILH+Q GQCGNQIG KFWEV+CDEHGID TG Y G+ LQLER+NVYYNEASGGRYVPRAVLMDLEPGTMDS+RSGPFG+IFRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQ+CHSLGG Sbjct: 1 MREILHVQAGQCGNQIGGKFWEVMCDEHGIDATGNYVGNFHLQLERVNVYYNEASGGRYVPRAVLMDLEPGTMDSLRSGPFGKIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGG 141 HSP 2 Score: 143.28 bits (360), Expect = 1.393e-110 Identity = 70/74 (94.59%), Postives = 71/74 (95.95%), Query Frame = 3 Query: 453 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT 674 GGTGSGMGTLLISKIREEYPDRMMLTFSVF P+ SDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT Sbjct: 141 GGTGSGMGTLLISKIREEYPDRMMLTFSVFAVPEGSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT 214
BLAST of CF417871 vs. ExPASy Swiss-Prot
Match: TBB1_CYAPA (Tubulin beta-1 chain OS=Cyanophora paradoxa GN=TUBB1 PE=2 SV=1) HSP 1 Score: 275.789 bits (704), Expect = 1.818e-110 Identity = 125/141 (88.65%), Postives = 135/141 (95.74%), Query Frame = 2 Query: 32 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGG 454 MREI+H+QGGQCGNQIGAKFWEVI DEHG+D TG Y GDSDLQLERINVYYNEA+GGRYVPRAVLMDLEPGTMDSVR+GP+GQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQ+ HS+GG Sbjct: 1 MREIVHVQGGQCGNQIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPYGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSMGG 141 HSP 2 Score: 143.665 bits (361), Expect = 1.818e-110 Identity = 68/74 (91.89%), Postives = 72/74 (97.30%), Query Frame = 3 Query: 453 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT 674 GGTGSGMGTLLI+K+REEYPDRMM T+SVFPSPKVSDTVVEPYNATLSVHQLVENADE MV+DNEALYDICFRT Sbjct: 141 GGTGSGMGTLLIAKVREEYPDRMMCTYSVFPSPKVSDTVVEPYNATLSVHQLVENADEVMVIDNEALYDICFRT 214
BLAST of CF417871 vs. ExPASy Swiss-Prot
Match: TBB_EUPOC (Tubulin beta chain OS=Euplotes octocarinatus PE=3 SV=1) HSP 1 Score: 275.404 bits (703), Expect = 1.818e-110 Identity = 126/141 (89.36%), Postives = 135/141 (95.74%), Query Frame = 2 Query: 32 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGG 454 MREI+H+QGGQCGNQIGAKFWEVI DEHG++ TG Y GDSDLQLERINVYYNEA+GGRYVPRAVLMDLEPGTMDSVR+GPFGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQ+ HSLGG Sbjct: 1 MREIVHVQGGQCGNQIGAKFWEVISDEHGVEPTGAYHGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGG 141 HSP 2 Score: 144.05 bits (362), Expect = 1.818e-110 Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 3 Query: 453 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT 674 GGTGSGMGTLLISKIREEYPDR+M TFSVFPSPKVSDTVVEPYNATLSVHQLVENADE MV+DNEALYDICFRT Sbjct: 141 GGTGSGMGTLLISKIREEYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVMVIDNEALYDICFRT 214 The following BLAST results are available for this feature:
BLAST of CF417871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 421
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417871 ID=CF417871; Name=CF417871; organism=Citrus sinensis; type=EST; length=676bpback to top |