CF417871
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417871 vs. ExPASy Swiss-Prot
Match: TBB2B_BOVIN (Tubulin beta-2B chain OS=Bos taurus GN=TUBB2B PE=1 SV=2) HSP 1 Score: 271.552 bits (693), Expect = 6.933e-107 Identity = 125/141 (88.65%), Postives = 134/141 (95.04%), Query Frame = 2 Query: 32 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGG 454 MREI+HIQ GQCGNQIGAKFWEVI DEHGID TG Y GDSDLQLERINVYYNEA+G +YVPRA+L+DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKE+E+CDCLQGFQ+ HSLGG Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGG 141 HSP 2 Score: 135.961 bits (341), Expect = 6.933e-107 Identity = 66/74 (89.19%), Postives = 68/74 (91.89%), Query Frame = 3 Query: 453 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT 674 GGTGSGMGTLLISKIREEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEALYDICFRT Sbjct: 141 GGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRT 214
BLAST of CF417871 vs. ExPASy Swiss-Prot
Match: TBB_PIG (Tubulin beta chain OS=Sus scrofa PE=1 SV=1) HSP 1 Score: 271.552 bits (693), Expect = 9.045e-107 Identity = 125/141 (88.65%), Postives = 134/141 (95.04%), Query Frame = 2 Query: 32 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGG 454 MREI+HIQ GQCGNQIGAKFWEVI DEHGID TG Y GDSDLQLERINVYYNEA+G +YVPRA+L+DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKE+E+CDCLQGFQ+ HSLGG Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGG 141 HSP 2 Score: 135.576 bits (340), Expect = 9.045e-107 Identity = 66/74 (89.19%), Postives = 68/74 (91.89%), Query Frame = 3 Query: 453 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT 674 GGTGSGMGTLLISKIREEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEALYDICFRT Sbjct: 141 GGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRT 214
BLAST of CF417871 vs. ExPASy Swiss-Prot
Match: TBB7_CHICK (Tubulin beta-7 chain OS=Gallus gallus PE=2 SV=1) HSP 1 Score: 271.552 bits (693), Expect = 9.045e-107 Identity = 125/141 (88.65%), Postives = 135/141 (95.74%), Query Frame = 2 Query: 32 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGG 454 MREI+HIQ GQCGNQIGAKFWEVI DEHGID TG Y GDSDLQL+RI+VYYNEA+GG+YVPRA+L+DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEAE+CDCLQGFQ+ HSLGG Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGG 141 HSP 2 Score: 135.576 bits (340), Expect = 9.045e-107 Identity = 66/74 (89.19%), Postives = 68/74 (91.89%), Query Frame = 3 Query: 453 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT 674 GGTGSGMGTLLISKIREEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEALYDICFRT Sbjct: 141 GGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRT 214
BLAST of CF417871 vs. ExPASy Swiss-Prot
Match: TBB5_XENTR (Tubulin beta chain OS=Xenopus tropicalis GN=tubb PE=2 SV=1) HSP 1 Score: 271.552 bits (693), Expect = 9.045e-107 Identity = 125/141 (88.65%), Postives = 135/141 (95.74%), Query Frame = 2 Query: 32 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGG 454 MREI+HIQ GQCGNQIGAKFWEVI DEHGID TG Y GDSDLQL+RI+VYYNEA+GG+YVPRA+L+DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEAE+CDCLQGFQ+ HSLGG Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGG 141 HSP 2 Score: 135.576 bits (340), Expect = 9.045e-107 Identity = 66/74 (89.19%), Postives = 68/74 (91.89%), Query Frame = 3 Query: 453 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT 674 GGTGSGMGTLLISKIREEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEALYDICFRT Sbjct: 141 GGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRT 214
BLAST of CF417871 vs. ExPASy Swiss-Prot
Match: TBB5_XENLA (Tubulin beta chain OS=Xenopus laevis GN=tubb PE=2 SV=1) HSP 1 Score: 271.552 bits (693), Expect = 9.045e-107 Identity = 125/141 (88.65%), Postives = 135/141 (95.74%), Query Frame = 2 Query: 32 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGG 454 MREI+HIQ GQCGNQIGAKFWEVI DEHGID TG Y GDSDLQL+RI+VYYNEA+GG+YVPRA+L+DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEAE+CDCLQGFQ+ HSLGG Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGG 141 HSP 2 Score: 135.576 bits (340), Expect = 9.045e-107 Identity = 66/74 (89.19%), Postives = 68/74 (91.89%), Query Frame = 3 Query: 453 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT 674 GGTGSGMGTLLISKIREEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEALYDICFRT Sbjct: 141 GGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRT 214
BLAST of CF417871 vs. ExPASy Swiss-Prot
Match: TBB5_RAT (Tubulin beta-5 chain OS=Rattus norvegicus GN=Tubb5 PE=1 SV=1) HSP 1 Score: 271.552 bits (693), Expect = 9.045e-107 Identity = 125/141 (88.65%), Postives = 135/141 (95.74%), Query Frame = 2 Query: 32 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGG 454 MREI+HIQ GQCGNQIGAKFWEVI DEHGID TG Y GDSDLQL+RI+VYYNEA+GG+YVPRA+L+DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEAE+CDCLQGFQ+ HSLGG Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGG 141 HSP 2 Score: 135.576 bits (340), Expect = 9.045e-107 Identity = 66/74 (89.19%), Postives = 68/74 (91.89%), Query Frame = 3 Query: 453 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT 674 GGTGSGMGTLLISKIREEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEALYDICFRT Sbjct: 141 GGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRT 214
BLAST of CF417871 vs. ExPASy Swiss-Prot
Match: TBB5_PONAB (Tubulin beta chain OS=Pongo abelii GN=TUBB PE=2 SV=1) HSP 1 Score: 271.552 bits (693), Expect = 9.045e-107 Identity = 125/141 (88.65%), Postives = 135/141 (95.74%), Query Frame = 2 Query: 32 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGG 454 MREI+HIQ GQCGNQIGAKFWEVI DEHGID TG Y GDSDLQL+RI+VYYNEA+GG+YVPRA+L+DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEAE+CDCLQGFQ+ HSLGG Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGG 141 HSP 2 Score: 135.576 bits (340), Expect = 9.045e-107 Identity = 66/74 (89.19%), Postives = 68/74 (91.89%), Query Frame = 3 Query: 453 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT 674 GGTGSGMGTLLISKIREEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEALYDICFRT Sbjct: 141 GGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRT 214
BLAST of CF417871 vs. ExPASy Swiss-Prot
Match: TBB5_PIG (Tubulin beta chain OS=Sus scrofa GN=TUBB PE=2 SV=1) HSP 1 Score: 271.552 bits (693), Expect = 9.045e-107 Identity = 125/141 (88.65%), Postives = 135/141 (95.74%), Query Frame = 2 Query: 32 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGG 454 MREI+HIQ GQCGNQIGAKFWEVI DEHGID TG Y GDSDLQL+RI+VYYNEA+GG+YVPRA+L+DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEAE+CDCLQGFQ+ HSLGG Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGG 141 HSP 2 Score: 135.576 bits (340), Expect = 9.045e-107 Identity = 66/74 (89.19%), Postives = 68/74 (91.89%), Query Frame = 3 Query: 453 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT 674 GGTGSGMGTLLISKIREEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEALYDICFRT Sbjct: 141 GGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRT 214
BLAST of CF417871 vs. ExPASy Swiss-Prot
Match: TBB5_PANTR (Tubulin beta chain OS=Pan troglodytes GN=TUBB PE=3 SV=1) HSP 1 Score: 271.552 bits (693), Expect = 9.045e-107 Identity = 125/141 (88.65%), Postives = 135/141 (95.74%), Query Frame = 2 Query: 32 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGG 454 MREI+HIQ GQCGNQIGAKFWEVI DEHGID TG Y GDSDLQL+RI+VYYNEA+GG+YVPRA+L+DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEAE+CDCLQGFQ+ HSLGG Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGG 141 HSP 2 Score: 135.576 bits (340), Expect = 9.045e-107 Identity = 66/74 (89.19%), Postives = 68/74 (91.89%), Query Frame = 3 Query: 453 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT 674 GGTGSGMGTLLISKIREEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEALYDICFRT Sbjct: 141 GGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRT 214
BLAST of CF417871 vs. ExPASy Swiss-Prot
Match: TBB5_MOUSE (Tubulin beta-5 chain OS=Mus musculus GN=Tubb5 PE=1 SV=1) HSP 1 Score: 271.552 bits (693), Expect = 9.045e-107 Identity = 125/141 (88.65%), Postives = 135/141 (95.74%), Query Frame = 2 Query: 32 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGG 454 MREI+HIQ GQCGNQIGAKFWEVI DEHGID TG Y GDSDLQL+RI+VYYNEA+GG+YVPRA+L+DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEAE+CDCLQGFQ+ HSLGG Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGG 141 HSP 2 Score: 135.576 bits (340), Expect = 9.045e-107 Identity = 66/74 (89.19%), Postives = 68/74 (91.89%), Query Frame = 3 Query: 453 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT 674 GGTGSGMGTLLISKIREEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEALYDICFRT Sbjct: 141 GGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRT 214 The following BLAST results are available for this feature:
BLAST of CF417871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 421
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417871 ID=CF417871; Name=CF417871; organism=Citrus sinensis; type=EST; length=676bpback to top |