CF417874

Overview
NameCF417874
Unique NameCF417874
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_PORYE (Photosystem I reaction center subunit II OS=Porphyra yezoensis GN=psaD PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.237e-42
Identity = 79/112 (70.54%), Postives = 88/112 (78.57%), Query Frame = 1
Query:  169 PPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIK-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501
            P  ++ N PSP FGGSTGG LR A+VEE Y ITW    E  FEMPTGG A MR G NLL LA+KEQCLALGT+L+SK+KI  Y+ YRVFPNGEVQYLHPKDGV+PEKVN GR
Sbjct:    2 PDTINLNMPSPTFGGSTGGWLRAAEVEEKYAITWTGKNESKFEMPTGGTATMRNGENLLYLAKKEQCLALGTQLKSKFKISDYKIYRVFPNGEVQYLHPKDGVFPEKVNTGR 113          

HSP 2 Score: 30.8018 bits (68), Expect = 1.237e-42
Identity = 11/20 (55.00%), Postives = 16/20 (80.00%), Query Frame = 2
Query:  527 SIGKNVSPIEVKFTGKQVYD 586
            SIG+N++P++VKF  K  YD
Sbjct:  122 SIGQNINPVDVKFMNKATYD 141          
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_MASLA (Photosystem I reaction center subunit II OS=Mastigocladus laminosus GN=psaD PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.966e-41
Identity = 73/102 (71.57%), Postives = 86/102 (84.31%), Query Frame = 1
Query:  196 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501
            +PIFGGSTGGLL+KA+VEE Y ITW SPKEQ+FEMPTGGAA MR+G NLL LARKEQC+ALG++LR      Y+ YR++PNGE  Y+HP DGV+PEKVNPGR
Sbjct:    9 TPIFGGSTGGLLKKAEVEEKYAITWTSPKEQVFEMPTGGAAKMRQGQNLLYLARKEQCIALGSQLRRLKITDYKIYRIYPNGETAYIHPADGVFPEKVNPGR 110          

HSP 2 Score: 28.8758 bits (63), Expect = 2.966e-41
Identity = 14/34 (41.18%), Postives = 19/34 (55.88%), Query Frame = 2
Query:  485 K*TPEGEGVGQNYRSIGKNVSPIEVKFTGKQVYD 586
            K  P  + V  N R IG+N  P ++KF+G   YD
Sbjct:  105 KVNPGRQKVRYNDRRIGQNPDPAKLKFSGVATYD 138          
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_SYNY3 (Photosystem I reaction center subunit II OS=Synechocystis sp. (strain PCC 6803) GN=psaD PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 1.451e-40
Identity = 77/104 (74.04%), Postives = 85/104 (81.73%), Query Frame = 1
Query:  199 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIK---YQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501
            P FGGSTGGLL KA  EE Y ITW S  EQ+FEMPTGGAAIM EG NLL LARKEQCLALGT+LR+K+K K   Y+ YRV+P+GEVQYLHP DGV+PEKVN GR
Sbjct:    9 PKFGGSTGGLLSKANREEKYAITWTSASEQVFEMPTGGAAIMNEGENLLYLARKEQCLALGTQLRTKFKPKIQDYKIYRVYPSGEVQYLHPADGVFPEKVNEGR 112          

HSP 2 Score: 30.4166 bits (67), Expect = 1.451e-40
Identity = 12/29 (41.38%), Postives = 18/29 (62.07%), Query Frame = 2
Query:  503 EGVGQNYRSIGKNVSPIEVKFTGKQVYDL 589
            E  G   R IG+N  P+ +KF+GK  Y++
Sbjct:  113 EAQGTKTRRIGQNPEPVTIKFSGKAPYEV 141          
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_GUITH (Photosystem I reaction center subunit II OS=Guillardia theta GN=psaD PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.504e-40
Identity = 79/109 (72.48%), Postives = 92/109 (84.40%), Query Frame = 1
Query:  178 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501
            L+   PSP F GSTGG LR A+ EE Y ITW SPKEQ+FEMPTGGAAIMR+G NLL LARKEQCLALGT++++ +KI  Y+ YR+FP+GEVQYLHPKDGV+PEKVNPGR
Sbjct:    5 LNLQIPSPTFEGSTGGWLRAAETEEKYAITWTSPKEQVFEMPTGGAAIMRKGENLLYLARKEQCLALGTQVKTSFKITDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGR 113          
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_ODOSI (Photosystem I reaction center subunit II OS=Odontella sinensis GN=psaD PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.964e-40
Identity = 81/108 (75.00%), Postives = 89/108 (82.41%), Query Frame = 1
Query:  178 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501
            L+  TP P FGGSTGG LR A+VEE Y ITW S KEQIFEMPTGGAAIMR G NLL LARKEQCLALGT+LR+     Y+ YR+FP+GEVQYLHPKDGV+PEKVNPGR
Sbjct:    3 LNLQTPFPTFGGSTGGWLRAAEVEEKYAITWTSKKEQIFEMPTGGAAIMRNGENLLYLARKEQCLALGTQLRTFKINDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGR 110          
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_SKECO (Photosystem I reaction center subunit II OS=Skeletonema costatum GN=psaD PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.172e-39
Identity = 79/108 (73.15%), Postives = 88/108 (81.48%), Query Frame = 1
Query:  178 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501
            L+  TP P FGGSTGG LR A+VEE Y ITW S KEQIFEMPTGG+AIMR G NLL LARKEQCLAL T+LR+     Y+ YR+FP+GEVQYLHPKDGV+PEKVNPGR
Sbjct:    3 LNLKTPFPTFGGSTGGWLRAAEVEEKYAITWTSAKEQIFEMPTGGSAIMRNGENLLYLARKEQCLALSTQLRTFKINDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGR 110          
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_SYNP6 (Photosystem I reaction center subunit II OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psaD PE=1 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 1.001e-38
Identity = 71/105 (67.62%), Postives = 84/105 (80.00%), Query Frame = 1
Query:  196 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIK---YQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501
            +P+FGGSTGGLL+ A+ EE Y ITW S KEQ+FE+PTGGAA+M EG NLL  ARKEQ LALGT+LR+K+K K   Y+ YR FP  +V YLHPKDGV+PEKVN GR
Sbjct:    9 TPVFGGSTGGLLKSAETEEKYAITWTSTKEQVFELPTGGAAVMHEGDNLLYFARKEQALALGTQLRTKFKPKIESYKIYRFFPGADVGYLHPKDGVFPEKVNEGR 113          

HSP 2 Score: 30.0314 bits (66), Expect = 1.001e-38
Identity = 13/24 (54.17%), Postives = 17/24 (70.83%), Query Frame = 2
Query:  512 GQNYRSIGKNVSPIEVKFTGKQVY 583
            G+  R IG+N +P  +KFTGKQ Y
Sbjct:  117 GKVDRRIGQNPNPATIKFTGKQPY 140          
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_CYACA (Photosystem I reaction center subunit II OS=Cyanidium caldarium GN=psaD PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 8.983e-37
Identity = 68/109 (62.39%), Postives = 83/109 (76.15%), Query Frame = 1
Query:  178 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501
            L+   PSP F G+TGG LR + +EE Y ITW S  E IFE+PTGG A M+ G NLL LA+KEQCLALG +L+ K+KI  ++ YR+FPNGE Q+LHPKDGV+PEKVN GR
Sbjct:    5 LNLKMPSPEFYGNTGGWLRSSDIEEKYAITWSSKNEDIFEIPTGGVAKMKAGDNLLYLAKKEQCLALGNQLKIKFKILNFKIYRIFPNGEAQFLHPKDGVFPEKVNEGR 113          

HSP 2 Score: 30.4166 bits (67), Expect = 8.983e-37
Identity = 12/25 (48.00%), Postives = 19/25 (76.00%), Query Frame = 2
Query:  509 VGQNYRSIGKNVSPIEVKFTGKQVY 583
            +G+   +IGKN++P EVKFT K ++
Sbjct:  116 IGKIDHNIGKNLNPAEVKFTHKTIF 140          
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_THEVL (Photosystem I reaction center subunit II OS=Thermosynechococcus vulcanus GN=psaD PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 1.525e-36
Identity = 66/102 (64.71%), Postives = 78/102 (76.47%), Query Frame = 1
Query:  199 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGT-RLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501
            P++GGSTGGLL  A  EE Y ITW SPKEQ+FEMPT GAA+MREG NL+  ARKEQCLAL   +LR +    Y+ YR+FP+GE   +HPKDGV+PEKVN GR
Sbjct:    9 PLYGGSTGGLLSAADTEEKYAITWTSPKEQVFEMPTAGAAVMREGENLVYFARKEQCLALAAQQLRPRKINDYKIYRIFPDGETVLIHPKDGVFPEKVNKGR 110          

HSP 2 Score: 33.4982 bits (75), Expect = 1.525e-36
Identity = 15/28 (53.57%), Postives = 20/28 (71.43%), Query Frame = 2
Query:  503 EGVGQNYRSIGKNVSPIEVKFTGKQVYD 586
            E V    RSIG+N +P ++KFTGK+ YD
Sbjct:  111 EAVNSVPRSIGQNPNPSQLKFTGKKPYD 138          
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_THEEB (Photosystem I reaction center subunit II OS=Thermosynechococcus elongatus (strain BP-1) GN=psaD PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 1.525e-36
Identity = 66/102 (64.71%), Postives = 78/102 (76.47%), Query Frame = 1
Query:  199 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGT-RLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501
            P++GGSTGGLL  A  EE Y ITW SPKEQ+FEMPT GAA+MREG NL+  ARKEQCLAL   +LR +    Y+ YR+FP+GE   +HPKDGV+PEKVN GR
Sbjct:    9 PLYGGSTGGLLSAADTEEKYAITWTSPKEQVFEMPTAGAAVMREGENLVYFARKEQCLALAAQQLRPRKINDYKIYRIFPDGETVLIHPKDGVFPEKVNKGR 110          

HSP 2 Score: 33.4982 bits (75), Expect = 1.525e-36
Identity = 15/28 (53.57%), Postives = 20/28 (71.43%), Query Frame = 2
Query:  503 EGVGQNYRSIGKNVSPIEVKFTGKQVYD 586
            E V    RSIG+N +P ++KFTGK+ YD
Sbjct:  111 EAVNSVPRSIGQNPNPSQLKFTGKKPYD 138          
The following BLAST results are available for this feature:
BLAST of CF417874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PSAD_PORYE1.237e-4270.54Photosystem I reaction center subunit II OS=Porphy... [more]
PSAD_MASLA2.966e-4171.57Photosystem I reaction center subunit II OS=Mastig... [more]
PSAD_SYNY31.451e-4074.04Photosystem I reaction center subunit II OS=Synech... [more]
PSAD_GUITH1.504e-4072.48Photosystem I reaction center subunit II OS=Guilla... [more]
PSAD_ODOSI1.964e-4075.00Photosystem I reaction center subunit II OS=Odonte... [more]
PSAD_SKECO2.172e-3973.15Photosystem I reaction center subunit II OS=Skelet... [more]
PSAD_SYNP61.001e-3867.62Photosystem I reaction center subunit II OS=Synech... [more]
PSAD_CYACA8.983e-3762.39Photosystem I reaction center subunit II OS=Cyanid... [more]
PSAD_THEVL1.525e-3664.71Photosystem I reaction center subunit II OS=Thermo... [more]
PSAD_THEEB1.525e-3664.71Photosystem I reaction center subunit II OS=Thermo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-804 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417874 ID=CF417874; Name=CF417874; organism=Citrus sinensis; type=EST; length=646bp
TTCGCACCGGCCAACTTCTCCACCACCAAATCCTCTGCGCCGTGGAAGCA
ATCATCATCATTTTCAGTAAGGCCACTAAAACATAATGCCCCACGTACCA
ACACCATCAAGGCCATGGCTGAGGGAAAAACAGAGACACCCACAAAAGAG
GCTCCGGTGGGCTTCACCCCACCAGAACTGGACCCCAACACCCCATCTCC
GATCTTCGGAGGCAGCACCGGCGGGCTGCTGCGGAAGGCTCAGGTGGAAG
AGTTTTATGTGATCACATGGGAGTCTCCTAAGGAGCAAATATTTGAAATG
CCCACTGGGGGTGCGGCCATTATGAGAGAAGGTCCGAATTTGCTGAAGCT
GGCTAGGAAAGAGCAGTGCTTGGCTCTGGGGACAAGGCTGAGGTCCAAGT
ACAAGATTAAGTACCAGTTTTACCGAGTGTTTCCCAATGGAGAGGTTCAG
TATTTGCATCCCAAGGATGGTGTTTATCCTGAGAAAGTGAACCCCGGAAG
GGGAAGGAGTTGGGCAGAATTACAGGTCTATTGGTAAGAATGTGAGTCCT
ATTGAGGTCAAGTTTACAGGGAAGCAAGTGTATGATCTGTAAATTTAAAT
TGTAAGCTGCTAAGCTGACGGGCCTCGGATGATCTGTTGATTAATT
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