CF417874
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_PORYE (Photosystem I reaction center subunit II OS=Porphyra yezoensis GN=psaD PE=3 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 1.237e-42 Identity = 79/112 (70.54%), Postives = 88/112 (78.57%), Query Frame = 1 Query: 169 PPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIK-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501 P ++ N PSP FGGSTGG LR A+VEE Y ITW E FEMPTGG A MR G NLL LA+KEQCLALGT+L+SK+KI Y+ YRVFPNGEVQYLHPKDGV+PEKVN GR Sbjct: 2 PDTINLNMPSPTFGGSTGGWLRAAEVEEKYAITWTGKNESKFEMPTGGTATMRNGENLLYLAKKEQCLALGTQLKSKFKISDYKIYRVFPNGEVQYLHPKDGVFPEKVNTGR 113 HSP 2 Score: 30.8018 bits (68), Expect = 1.237e-42 Identity = 11/20 (55.00%), Postives = 16/20 (80.00%), Query Frame = 2 Query: 527 SIGKNVSPIEVKFTGKQVYD 586 SIG+N++P++VKF K YD Sbjct: 122 SIGQNINPVDVKFMNKATYD 141
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_MASLA (Photosystem I reaction center subunit II OS=Mastigocladus laminosus GN=psaD PE=3 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 2.966e-41 Identity = 73/102 (71.57%), Postives = 86/102 (84.31%), Query Frame = 1 Query: 196 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501 +PIFGGSTGGLL+KA+VEE Y ITW SPKEQ+FEMPTGGAA MR+G NLL LARKEQC+ALG++LR Y+ YR++PNGE Y+HP DGV+PEKVNPGR Sbjct: 9 TPIFGGSTGGLLKKAEVEEKYAITWTSPKEQVFEMPTGGAAKMRQGQNLLYLARKEQCIALGSQLRRLKITDYKIYRIYPNGETAYIHPADGVFPEKVNPGR 110 HSP 2 Score: 28.8758 bits (63), Expect = 2.966e-41 Identity = 14/34 (41.18%), Postives = 19/34 (55.88%), Query Frame = 2 Query: 485 K*TPEGEGVGQNYRSIGKNVSPIEVKFTGKQVYD 586 K P + V N R IG+N P ++KF+G YD Sbjct: 105 KVNPGRQKVRYNDRRIGQNPDPAKLKFSGVATYD 138
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_SYNY3 (Photosystem I reaction center subunit II OS=Synechocystis sp. (strain PCC 6803) GN=psaD PE=1 SV=2) HSP 1 Score: 155.606 bits (392), Expect = 1.451e-40 Identity = 77/104 (74.04%), Postives = 85/104 (81.73%), Query Frame = 1 Query: 199 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIK---YQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501 P FGGSTGGLL KA EE Y ITW S EQ+FEMPTGGAAIM EG NLL LARKEQCLALGT+LR+K+K K Y+ YRV+P+GEVQYLHP DGV+PEKVN GR Sbjct: 9 PKFGGSTGGLLSKANREEKYAITWTSASEQVFEMPTGGAAIMNEGENLLYLARKEQCLALGTQLRTKFKPKIQDYKIYRVYPSGEVQYLHPADGVFPEKVNEGR 112 HSP 2 Score: 30.4166 bits (67), Expect = 1.451e-40 Identity = 12/29 (41.38%), Postives = 18/29 (62.07%), Query Frame = 2 Query: 503 EGVGQNYRSIGKNVSPIEVKFTGKQVYDL 589 E G R IG+N P+ +KF+GK Y++ Sbjct: 113 EAQGTKTRRIGQNPEPVTIKFSGKAPYEV 141
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_GUITH (Photosystem I reaction center subunit II OS=Guillardia theta GN=psaD PE=3 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 1.504e-40 Identity = 79/109 (72.48%), Postives = 92/109 (84.40%), Query Frame = 1 Query: 178 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501 L+ PSP F GSTGG LR A+ EE Y ITW SPKEQ+FEMPTGGAAIMR+G NLL LARKEQCLALGT++++ +KI Y+ YR+FP+GEVQYLHPKDGV+PEKVNPGR Sbjct: 5 LNLQIPSPTFEGSTGGWLRAAETEEKYAITWTSPKEQVFEMPTGGAAIMRKGENLLYLARKEQCLALGTQVKTSFKITDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGR 113
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_ODOSI (Photosystem I reaction center subunit II OS=Odontella sinensis GN=psaD PE=3 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 1.964e-40 Identity = 81/108 (75.00%), Postives = 89/108 (82.41%), Query Frame = 1 Query: 178 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501 L+ TP P FGGSTGG LR A+VEE Y ITW S KEQIFEMPTGGAAIMR G NLL LARKEQCLALGT+LR+ Y+ YR+FP+GEVQYLHPKDGV+PEKVNPGR Sbjct: 3 LNLQTPFPTFGGSTGGWLRAAEVEEKYAITWTSKKEQIFEMPTGGAAIMRNGENLLYLARKEQCLALGTQLRTFKINDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGR 110
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_SKECO (Photosystem I reaction center subunit II OS=Skeletonema costatum GN=psaD PE=3 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 2.172e-39 Identity = 79/108 (73.15%), Postives = 88/108 (81.48%), Query Frame = 1 Query: 178 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501 L+ TP P FGGSTGG LR A+VEE Y ITW S KEQIFEMPTGG+AIMR G NLL LARKEQCLAL T+LR+ Y+ YR+FP+GEVQYLHPKDGV+PEKVNPGR Sbjct: 3 LNLKTPFPTFGGSTGGWLRAAEVEEKYAITWTSAKEQIFEMPTGGSAIMRNGENLLYLARKEQCLALSTQLRTFKINDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGR 110
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_SYNP6 (Photosystem I reaction center subunit II OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psaD PE=1 SV=3) HSP 1 Score: 149.828 bits (377), Expect = 1.001e-38 Identity = 71/105 (67.62%), Postives = 84/105 (80.00%), Query Frame = 1 Query: 196 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIK---YQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501 +P+FGGSTGGLL+ A+ EE Y ITW S KEQ+FE+PTGGAA+M EG NLL ARKEQ LALGT+LR+K+K K Y+ YR FP +V YLHPKDGV+PEKVN GR Sbjct: 9 TPVFGGSTGGLLKSAETEEKYAITWTSTKEQVFELPTGGAAVMHEGDNLLYFARKEQALALGTQLRTKFKPKIESYKIYRFFPGADVGYLHPKDGVFPEKVNEGR 113 HSP 2 Score: 30.0314 bits (66), Expect = 1.001e-38 Identity = 13/24 (54.17%), Postives = 17/24 (70.83%), Query Frame = 2 Query: 512 GQNYRSIGKNVSPIEVKFTGKQVY 583 G+ R IG+N +P +KFTGKQ Y Sbjct: 117 GKVDRRIGQNPNPATIKFTGKQPY 140
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_CYACA (Photosystem I reaction center subunit II OS=Cyanidium caldarium GN=psaD PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 8.983e-37 Identity = 68/109 (62.39%), Postives = 83/109 (76.15%), Query Frame = 1 Query: 178 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501 L+ PSP F G+TGG LR + +EE Y ITW S E IFE+PTGG A M+ G NLL LA+KEQCLALG +L+ K+KI ++ YR+FPNGE Q+LHPKDGV+PEKVN GR Sbjct: 5 LNLKMPSPEFYGNTGGWLRSSDIEEKYAITWSSKNEDIFEIPTGGVAKMKAGDNLLYLAKKEQCLALGNQLKIKFKILNFKIYRIFPNGEAQFLHPKDGVFPEKVNEGR 113 HSP 2 Score: 30.4166 bits (67), Expect = 8.983e-37 Identity = 12/25 (48.00%), Postives = 19/25 (76.00%), Query Frame = 2 Query: 509 VGQNYRSIGKNVSPIEVKFTGKQVY 583 +G+ +IGKN++P EVKFT K ++ Sbjct: 116 IGKIDHNIGKNLNPAEVKFTHKTIF 140
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_THEVL (Photosystem I reaction center subunit II OS=Thermosynechococcus vulcanus GN=psaD PE=1 SV=2) HSP 1 Score: 139.043 bits (349), Expect = 1.525e-36 Identity = 66/102 (64.71%), Postives = 78/102 (76.47%), Query Frame = 1 Query: 199 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGT-RLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501 P++GGSTGGLL A EE Y ITW SPKEQ+FEMPT GAA+MREG NL+ ARKEQCLAL +LR + Y+ YR+FP+GE +HPKDGV+PEKVN GR Sbjct: 9 PLYGGSTGGLLSAADTEEKYAITWTSPKEQVFEMPTAGAAVMREGENLVYFARKEQCLALAAQQLRPRKINDYKIYRIFPDGETVLIHPKDGVFPEKVNKGR 110 HSP 2 Score: 33.4982 bits (75), Expect = 1.525e-36 Identity = 15/28 (53.57%), Postives = 20/28 (71.43%), Query Frame = 2 Query: 503 EGVGQNYRSIGKNVSPIEVKFTGKQVYD 586 E V RSIG+N +P ++KFTGK+ YD Sbjct: 111 EAVNSVPRSIGQNPNPSQLKFTGKKPYD 138
BLAST of CF417874 vs. ExPASy Swiss-Prot
Match: PSAD_THEEB (Photosystem I reaction center subunit II OS=Thermosynechococcus elongatus (strain BP-1) GN=psaD PE=1 SV=2) HSP 1 Score: 139.043 bits (349), Expect = 1.525e-36 Identity = 66/102 (64.71%), Postives = 78/102 (76.47%), Query Frame = 1 Query: 199 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGT-RLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 501 P++GGSTGGLL A EE Y ITW SPKEQ+FEMPT GAA+MREG NL+ ARKEQCLAL +LR + Y+ YR+FP+GE +HPKDGV+PEKVN GR Sbjct: 9 PLYGGSTGGLLSAADTEEKYAITWTSPKEQVFEMPTAGAAVMREGENLVYFARKEQCLALAAQQLRPRKINDYKIYRIFPDGETVLIHPKDGVFPEKVNKGR 110 HSP 2 Score: 33.4982 bits (75), Expect = 1.525e-36 Identity = 15/28 (53.57%), Postives = 20/28 (71.43%), Query Frame = 2 Query: 503 EGVGQNYRSIGKNVSPIEVKFTGKQVYD 586 E V RSIG+N +P ++KFTGK+ YD Sbjct: 111 EAVNSVPRSIGQNPNPSQLKFTGKKPYD 138 The following BLAST results are available for this feature:
BLAST of CF417874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417874 ID=CF417874; Name=CF417874; organism=Citrus sinensis; type=EST; length=646bpback to top |