CF417883

Overview
NameCF417883
Unique NameCF417883
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417883 vs. ExPASy Swiss-Prot
Match: MTNA_SYNSC (Methylthioribose-1-phosphate isomerase OS=Synechococcus sp. (strain CC9605) GN=mtnA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.077e-36
Identity = 83/158 (52.53%), Postives = 103/158 (65.19%), Query Frame = 2
Query:    2 HSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 475
            H+ G+L  A+  ETRP  QG+ L+A+EL    +P           LM+ G V AV+VG DRV+ANGD ANKIGTY+LAL A+ H I FYV AP +SID     G+ I IEER A+E+   R   G  VAA G  VWNPAFD+TPA+L+TG ITE GV+
Sbjct:  166 HARGLLRHAWLDETRPRLQGAALSAWELGCLGVPCTVIVDGASGLLMRRGEVDAVMVGCDRVSANGDVANKIGTYNLALVARAHGIPFYVCAPGSSIDRATVDGEAITIEERDAEEITHVR---GMDVAAPGAQVWNPAFDITPAHLVTGFITEFGVL 320          
BLAST of CF417883 vs. ExPASy Swiss-Prot
Match: MTNA_HALHL (Methylthioribose-1-phosphate isomerase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.325e-36
Identity = 79/163 (48.47%), Postives = 106/163 (65.03%), Query Frame = 2
Query:    5 SEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKAGAD 493
            ++G +ER +  ETRP+ QGSRLTA+EL  D IP           LM+ G+V   IVGADR+AANGD ANKIGTY++AL A+ H +   V AP ++IDL   +G++I IE R A+E+L + GG      +  +  WNP FDVTPA L+  I+TE+GVV +  AD
Sbjct:  183 ADGRVERVFADETRPWLQGSRLTAWELAADGIPVDLLADGAAAALMRTGQVQWAIVGADRIAANGDVANKIGTYAVALAARQHGVRLMVVAPTSTIDLATPAGEQIPIETRDAREVLYA-GGRRIAPESEAVGAWNPVFDVTPAELVDVIVTERGVVHQPDAD 344          
BLAST of CF417883 vs. ExPASy Swiss-Prot
Match: MTNA_DEHSC (Methylthioribose-1-phosphate isomerase OS=Dehalococcoides sp. (strain CBDB1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.954e-36
Identity = 79/152 (51.97%), Postives = 101/152 (66.45%), Query Frame = 2
Query:   26 AYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTK 481
            A+ +ETRP  QG+RLTA EL    +P            MK G ++AV+VGADR+A NGDTANKIGTYSLA+ A  H I FYVAAP ++ D ++ SG +IVIEER  +E+   R   G+++A   I V NPAFDVTPANLI   ITE G++ +
Sbjct:  182 AFATETRPLLQGARLTALELKEAGVPFKLITDSMAGHFMKKGVINAVVVGADRIARNGDTANKIGTYSLAVLALAHGIPFYVAAPSSTFDKSIESGNDIVIEERKPEEITYLR---GQRIAPENIDVANPAFDVTPANLIAAFITENGIIRR 330          
BLAST of CF417883 vs. ExPASy Swiss-Prot
Match: MTNA_DEHSB (Methylthioribose-1-phosphate isomerase OS=Dehalococcoides sp. (strain BAV1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.954e-36
Identity = 79/152 (51.97%), Postives = 101/152 (66.45%), Query Frame = 2
Query:   26 AYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTK 481
            A+ +ETRP  QG+RLTA EL    +P            MK G ++AV+VGADR+A NGDTANKIGTYSLA+ A  H I FYVAAP ++ D ++ SG +IVIEER  +E+   R   G+++A   I V NPAFDVTPANLI   ITE G++ +
Sbjct:  182 AFATETRPLLQGARLTALELKEAGVPFKLITDSMAGHFMKKGVINAVVVGADRIARNGDTANKIGTYSLAVLALAHGIPFYVAAPSSTFDKSIESGNDIVIEERKPEEITYLR---GQRIAPENIDVANPAFDVTPANLIAAFITENGIIRR 330          
BLAST of CF417883 vs. ExPASy Swiss-Prot
Match: EI2B1_PYRFU (Putative translation initiation factor eIF-2B subunit 1 OS=Pyrococcus furiosus GN=PF1349 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.954e-36
Identity = 81/158 (51.27%), Postives = 106/158 (67.09%), Query Frame = 2
Query:    2 HSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 475
            H EG L+  +  ETRP  QG+RL+A+E  +D +            +M+ G+V A+IVGADR+ ANGD ANKIGTY LA+ AK H I F+  APL+SID++LSSG+EI IEERS +E+L   G       A  + V+NPAFDVTP   +TGIIT++GVV
Sbjct:  188 HKEGTLKLLWLDETRPVLQGARLSAWEYSYDGLNVKLIADNAAAFVMQQGKVDAIIVGADRIVANGDFANKIGTYMLAVLAKEHGIPFFTVAPLSSIDMSLSSGKEIPIEERSPEEVLTCGGCR----IAPDVPVYNPAFDVTPHKYLTGIITDRGVV 341          
BLAST of CF417883 vs. ExPASy Swiss-Prot
Match: MTNA_SYNP6 (Methylthioribose-1-phosphate isomerase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.083e-36
Identity = 76/158 (48.10%), Postives = 102/158 (64.56%), Query Frame = 2
Query:    2 HSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 475
            H +G    AY  ETRP  QG+ L+AFEL    +P           LM+  ++   +VG DRV ANGD ANKIGTY+LAL AK H + FYVA P+++ID +L++G EI IEER  +E+   R   G+ +A +G   WNPAFD+TPA L+T IITE+G++
Sbjct:  178 HEQGKQIHAYLDETRPRLQGANLSAFELQAYGVPHTVIVDGASGFLMRQQQIDCCLVGCDRVTANGDVANKIGTYNLALAAKAHGVPFYVACPISTIDRSLATGAEIEIEERDGREITEIR---GQAIAPAGTKTWNPAFDITPAELVTAIITERGIL 332          
BLAST of CF417883 vs. ExPASy Swiss-Prot
Match: MTNA_SYNE7 (Methylthioribose-1-phosphate isomerase OS=Synechococcus elongatus (strain PCC 7942) GN=mtnA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.083e-36
Identity = 76/158 (48.10%), Postives = 102/158 (64.56%), Query Frame = 2
Query:    2 HSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 475
            H +G    AY  ETRP  QG+ L+AFEL    +P           LM+  ++   +VG DRV ANGD ANKIGTY+LAL AK H + FYVA P+++ID +L++G EI IEER  +E+   R   G+ +A +G   WNPAFD+TPA L+T IITE+G++
Sbjct:  178 HEQGKQIHAYLDETRPRLQGANLSAFELQAYGVPHTVIVDGASGFLMRQQQIDCCLVGCDRVTANGDVANKIGTYNLALAAKAHGVPFYVACPISTIDRSLATGAEIEIEERDGREITEIR---GQAIAPAGTKTWNPAFDITPAELVTAIITERGIL 332          
BLAST of CF417883 vs. ExPASy Swiss-Prot
Match: MTNA_ACAM1 (Methylthioribose-1-phosphate isomerase OS=Acaryochloris marina (strain MBIC 11017) GN=mtnA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.083e-36
Identity = 81/155 (52.26%), Postives = 99/155 (63.87%), Query Frame = 2
Query:   11 GVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLG-EQVAASGISVWNPAFDVTPANLITGIITEKGV 472
            G L R Y  ETRP  QG++LT +E V + IP            M+   +  V+VGADR+AANGD ANKIGTYS+ALCAK HN+ FYVAAPL++ID  L+ G  I IEER   E+      +G   +   G+  +NPAFDVTPA LITGIITE GV
Sbjct:  189 GRLARVYADETRPRLQGAKLTTWECVQEEIPVTLISDGMAAHCMQQNLIDVVVVGADRIAANGDAANKIGTYSVALCAKAHNLPFYVAAPLSTIDFDLADGGGIPIEERHPSEIY----QIGTTDICPKGVEFYNPAFDVTPAELITGIITEHGV 339          
BLAST of CF417883 vs. ExPASy Swiss-Prot
Match: MTNA_PSEMY (Methylthioribose-1-phosphate isomerase OS=Pseudomonas mendocina (strain ymp) GN=mtnA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.186e-35
Identity = 80/160 (50.00%), Postives = 104/160 (65.00%), Query Frame = 2
Query:    2 HSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTK 481
            H EG+LE  Y  ETRP+ QG+RLTA+EL  D +P           LMK   ++ VIVGADR+ ANGD ANKIGTY LA+ A  H + F V AP ++ID++L SG +I++EERS  ELL   G    Q  A+ +   NP FDVTPA+L+  I+TEKGV+ +
Sbjct:  187 HLEGLLEHVYVDETRPWLQGARLTAWELAGDGVPVSLNVDAAAAHLMKTKGITWVIVGADRITANGDVANKIGTYQLAVNAMHHGMRFMVVAPSSTIDMSLESGDDILLEERSGSELLEVAG----QPVAADVPAVNPVFDVTPADLVDYIVTEKGVIER 342          
BLAST of CF417883 vs. ExPASy Swiss-Prot
Match: MTNA2_THELT (Methylthioribose-1-phosphate isomerase 2 OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=mtnA2 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.186e-35
Identity = 81/158 (51.27%), Postives = 103/158 (65.19%), Query Frame = 2
Query:    2 HSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 475
            H  G     +  ETRP  QG+RL+A+E+    IP           +MK  ++   +VGADR+AANGDTANKIGTY+LA+ AK+HN+  YV AP ++IDL   +GQ+I IEERSA E+ C       QVA     V+NPAFDVTPA LI+GIITEKG+V
Sbjct:  176 HEIGKKIHVFLDETRPRLQGARLSAWEMKELGIPHTIIVDGASGLVMKKFKIDLALVGADRIAANGDTANKIGTYNLAIVAKYHNVPLYVVAPTSTIDLKTPAGQDIPIEERSADEIRCVG---NSQVAPQESPVFNPAFDVTPAELISGIITEKGIV 330          
The following BLAST results are available for this feature:
BLAST of CF417883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
MTNA_SYNSC4.077e-3652.53Methylthioribose-1-phosphate isomerase OS=Synechoc... [more]
MTNA_HALHL5.325e-3648.47Methylthioribose-1-phosphate isomerase OS=Halorhod... [more]
MTNA_DEHSC6.954e-3651.97Methylthioribose-1-phosphate isomerase OS=Dehaloco... [more]
MTNA_DEHSB6.954e-3651.97Methylthioribose-1-phosphate isomerase OS=Dehaloco... [more]
EI2B1_PYRFU6.954e-3651.27Putative translation initiation factor eIF-2B subu... [more]
MTNA_SYNP69.083e-3648.10Methylthioribose-1-phosphate isomerase OS=Synechoc... [more]
MTNA_SYNE79.083e-3648.10Methylthioribose-1-phosphate isomerase OS=Synechoc... [more]
MTNA_ACAM19.083e-3652.26Methylthioribose-1-phosphate isomerase OS=Acaryoch... [more]
MTNA_PSEMY1.186e-3550.00Methylthioribose-1-phosphate isomerase OS=Pseudomo... [more]
MTNA2_THELT1.186e-3551.27Methylthioribose-1-phosphate isomerase 2 OS=Thermo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-813 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417883 ID=CF417883; Name=CF417883; organism=Citrus sinensis; type=EST; length=672bp
TCATTCTGAGGGAGTGTTAGAAAGAGCTTATTGCTCTGAAACACGTCCAT
TCAACCAAGGATCTAGACTCACTGCTTTTGAGTTGGTACATGATCGCATA
CCAGCTACTCTTATAGCCGACTCTGCTGCGGCTGCATTGATGAAAGATGG
TCGTGTGAGTGCTGTCATTGTCGGAGCAGATCGAGTGGCTGCAAATGGTG
ACACTGCTAACAAGATTGGAACCTACAGCCTTGCATTATGTGCAAAGTTT
CATAATATTCTGTTTTATGTGGCTGCTCCACTGACGTCAATTGATTTAAC
CCTTTCTTCTGGACAAGAGATTGTCATAGAGGAGAGGTCTGCTAAAGAAT
TGTTGTGCTCTCGAGGAGGACTTGGTGAACAAGTAGCTGCATCTGGAATC
TCTGTCTGGAATCCGGCTTTTGATGTTACCCCAGCTAATTTGATCACTGG
AATTATAACAGAAAAGGGTGTCGTTACAAAGGCAGGTGCTGATGATGCTT
TTGACATAAAGGATTTCATACAAAAGACAGCCTGAGGCTCTGATGCAAAA
GAAGGTGATTTTTAACCGGATGAAGTGTACCCTTGTAAATTTAAACAAGA
AATGAAGTTCTCCAGCCTGGGCGAAGATCTGTGGGAAGGAACATTGTATC
TCGCTGCTTTAAAGTCCCTTTT
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