CF417889

Overview
NameCF417889
Unique NameCF417889
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417889 vs. ExPASy Swiss-Prot
Match: GL33_ORYSJ (Germin-like protein 3-3 OS=Oryza sativa subsp. japonica GN=Os03g0693700 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.539e-27
Identity = 73/195 (37.44%), Postives = 107/195 (54.87%), Query Frame = 3
Query:   18 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSG-LGVAGNTTSIINAA-VTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISS--SANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKAILGG 584
            + DFCVADL    +  GYPC  P     D+F+FS  L   G+  +  N + VT   VA +P VN LG+S+ R+D A GG  P H HP A+E+ +V+ G +  G I S  + N  Y + ++ G+  + P+GL+HFQ N G   A   VSFNS NPG+      LF +N  + + ++ +   +D   V+ LK+   G
Sbjct:   32 LQDFCVADLDSEVTLNGYPC-KPTPAAGDEFLFSSRLATGGDVNANPNGSNVTQLDVAGWPGVNTLGVSMNRIDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGSLDTGNRYYSRVVRGGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDAGVVELLKSKFTG 225          
BLAST of CF417889 vs. ExPASy Swiss-Prot
Match: OXO1_HORVU (Oxalate oxidase 1 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.316e-27
Identity = 74/195 (37.95%), Postives = 112/195 (57.44%), Query Frame = 3
Query:   18 VNDFCVADLK-LSDSPAGYPCVPPAMVTADDFVFSG-LGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISS--SANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKAILGG 584
            + DFCVADL   + S  G+ C P +    DDF+FS  L  AGNT++   +AVT   VA++P  N LG+S+ R+D A GG  P H HP A+EI +V+ G +  G + S  S N +Y + ++ G+  + P+GL+HFQ N G   A   VSFNS NPG+      LF ++  + + ++ +   ++   V+ LK+   G
Sbjct:    6 LQDFCVADLDGKAVSVNGHTCKPMSEA-GDDFLFSSKLTKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLTKALRVEAGVVELLKSKFAG 199          
BLAST of CF417889 vs. ExPASy Swiss-Prot
Match: GL110_ARATH (Germin-like protein subfamily 1 member 10 OS=Arabidopsis thaliana GN=At5g38930 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.316e-27
Identity = 66/160 (41.25%), Postives = 94/160 (58.75%), Query Frame = 3
Query:    3 SSNAMVNDFCVADLKLSDSPA--GYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSA-NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGL 473
            S  + + DFCV+    ++     G  C  P +VTADDF F GL  A   TS + + VT   V     +N LG+SL R+D A  G  P HTHP A+EIL+V  G +  GF++S+  N ++ K L +GD+ +FP+GL+HFQ N G   A+ F + +S NPG+
Sbjct:   25 SDPSQLQDFCVSANSSANGVFVNGKFCKDPKLVTADDFFFPGLQTARPITSPVGSTVTAVNVNNLLGLNTLGISLVRIDYAVDGQNPPHTHPRATEILVVELGTLLVGFVTSNPDNRLFTKVLNEGDVFVFPEGLIHFQANIGKAPAVAFAALSSQNPGV 184          
BLAST of CF417889 vs. ExPASy Swiss-Prot
Match: GL18_ARATH (Germin-like protein subfamily 1 member 8 OS=Arabidopsis thaliana GN=GLP9 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.331e-27
Identity = 72/196 (36.73%), Postives = 106/196 (54.08%), Query Frame = 3
Query:    3 SSNAMVNDFCVADLKLSDSPA--GYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSS--ANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFAN--NLSSQLVEQTTFLDDATVKRLKA 572
            S  + + DFCV     +D     G  C  P +V ADDF FS L   GNT + + + VT   V     +N LG+SL R+D A  G  P HTHP A+EIL+V  G +  GFISS+   N ++ KTL  GD+ +FP+GL+HFQ N G   A+   + +S N G+      +F +  ++   ++ +   +D   V+ L+A
Sbjct:   25 SDPSPLQDFCVGVNTPADGVFVNGKFCKDPRIVFADDFFFSSLNRPGNTNNAVGSNVTTVNVNNLGGLNTLGISLVRIDYAPNGQNPPHTHPRATEILVVQQGTLLVGFISSNQDGNRLFAKTLNVGDVFVFPEGLIHFQFNLGGTPAVAIAALSSQNAGVITIANTIFGSKPDVDPNVLARAFQMDVNAVRNLQA 220          
BLAST of CF417889 vs. ExPASy Swiss-Prot
Match: GL15_ARATH (Germin-like protein subfamily 1 member 5 OS=Arabidopsis thaliana GN=At3g04190 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.331e-27
Identity = 71/191 (37.17%), Postives = 106/191 (55.50%), Query Frame = 3
Query:   18 VNDFCVADLKLSDSPA-GYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSA--NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKAI 575
            + D+CVA  + +     G  C  P  VTA+DF  SGL V GNT++     +T   V + P +N LG+ +AR+D A GG+ P HTHP  SEI LV+ G +  GF+SS+    T++ K L  GD+ +FP+GL+ F  N G   A+   +  S NPG  I   A+F +   +  +++ +   LD   VK  +A+
Sbjct:   30 LQDYCVATNETNGVYVNGKFCKDPKCVTANDFYTSGLNVPGNTSTGPGVKITVVDVKRMPGLNTLGVDIARIDFAPGGLYPPHTHPRGSEIFLVMKGKLFVGFVSSNEYNYTLFTKVLYPGDVFVFPKGLIQFHANIGKTNAVVIAATGSQNPGRIIIGNAVFGSKPLIDPKVLAKAFALDFNKVKYFQAV 220          
BLAST of CF417889 vs. ExPASy Swiss-Prot
Match: RHRE_PEA (Rhicadhesin receptor OS=Pisum sativum GN=GER1 PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 5.656e-27
Identity = 65/160 (40.62%), Postives = 94/160 (58.75%), Query Frame = 3
Query:   18 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALF 497
            + D CVAD        G+ C P + VTA+DF  + L   G T +   + VT A V + P +N LG+S+AR+D A GG+ P HTHP A+E++ V+ G +  GFI+++ N +  KT+ KG+  +FP+GL+HFQ N+G + A     FNS  PG       LF
Sbjct:   26 LQDLCVADYASVILVNGFACKPASNVTAEDFFSNLLVKQGATNNTFGSLVTGANVQRIPGLNTLGVSMARIDYAPGGLNPPHTHPRATEMVFVLEGQLDVGFITTT-NQLIAKTIAKGETFVFPKGLVHFQKNNGWEPATVIAGFNSQLPGTVNIPLTLF 184          
BLAST of CF417889 vs. ExPASy Swiss-Prot
Match: GL35_ORYSJ (Germin-like protein 3-5 OS=Oryza sativa subsp. japonica GN=Os03g0693900 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.387e-27
Identity = 71/195 (36.41%), Postives = 108/195 (55.38%), Query Frame = 3
Query:   18 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSG-LGVAGNTTSIINAA-VTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISS--SANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKAILGG 584
            + DFCVADL    +  G+ C  PA    D+F+FS  +   G+  +  N + VT   VA++P VN LG+S+ R+D A GG  P H HP A+E+ +V+ G +  G I +  + N  Y K ++ G+  + P+GL+HFQ N G   A   VSFNS NPG+      LF +N  + + ++ +   +D   V+ LK+   G
Sbjct:   32 LQDFCVADLNSEVTVNGHAC-KPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDAGVVELLKSKFTG 225          
BLAST of CF417889 vs. ExPASy Swiss-Prot
Match: GL88_ORYSJ (Germin-like protein 8-8 OS=Oryza sativa subsp. japonica GN=Os08g0189700 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.648e-27
Identity = 70/194 (36.08%), Postives = 109/194 (56.19%), Query Frame = 3
Query:    3 SSNAMVNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSA-NTVYVKTLKKGDIMIFPQGLLHFQVNSGA-DGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKA 572
            S  + + DFCVAD        G+ C+ P  VTAD F  + +      T+ + + VT   V Q P +N LG+S+AR+D A  G  P HTHP A+EIL V+ G +  GF++S+  NT++ K L KGD+ +FP+GL+HFQ N      A+   + +S NPG      A+F +   +S +++ +   ++  T+  L+A
Sbjct:   23 SDPSPLQDFCVADKHSPVLVNGFACLDPKYVTADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDKVLAKAFQVEKGTIDWLQA 216          
BLAST of CF417889 vs. ExPASy Swiss-Prot
Match: GL36_ORYSJ (Germin-like protein 3-6 OS=Oryza sativa subsp. japonica GN=Os03g0694000 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.648e-27
Identity = 71/195 (36.41%), Postives = 108/195 (55.38%), Query Frame = 3
Query:   18 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSG-LGVAGNTTSIINAA-VTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISS--SANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKAILGG 584
            + DFCVADL    +  G+ C  PA    D+F+FS  +   G+  +  N + VT   VA++P VN LG+S+ R+D A GG  P H HP A+E+ +V+ G +  G I +  + N  Y K ++ G+  + P+GL+HFQ N G   A   VSFNS NPG+      LF +N  + + ++ +   +D   V+ LK+   G
Sbjct:   34 LQDFCVADLDSKVTVNGHAC-KPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDAGVVELLKSKFTG 227          
BLAST of CF417889 vs. ExPASy Swiss-Prot
Match: GL83_ORYSJ (Germin-like protein 8-3 OS=Oryza sativa subsp. japonica GN=GER2 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.260e-26
Identity = 63/164 (38.41%), Postives = 98/164 (59.76%), Query Frame = 3
Query:   18 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSG-LGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGAD-GALGFVSFNSPNPGLQITDFALFAN 503
            + DFCVAD+       G+PC  P  VT+DDF  +    +  NT + + + VT   V  FP +N LG+SLAR+D A  GV P H HP A+E+L V+ G +  GF++S+ N ++ K + KGD+ +FP+ ++HFQ+N   +  A+   + +S NPG+     A+F +
Sbjct:   29 LQDFCVADMASPVRVNGFPCKNPMNVTSDDFFNAAKFDMPRNTMNKVGSNVTNLNVINFPGLNTLGISLARIDYAPMGVNPPHVHPRATELLTVLEGTLYVGFVTSNPNRLFSKVVHKGDVFVFPKAMIHFQMNLDHNKPAVAQSALSSQNPGVITIASAIFGS 192          
The following BLAST results are available for this feature:
BLAST of CF417889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL33_ORYSJ2.539e-2737.44Germin-like protein 3-3 OS=Oryza sativa subsp. jap... [more]
OXO1_HORVU3.316e-2737.95Oxalate oxidase 1 OS=Hordeum vulgare PE=1 SV=1[more]
GL110_ARATH3.316e-2741.25Germin-like protein subfamily 1 member 10 OS=Arabi... [more]
GL18_ARATH4.331e-2736.73Germin-like protein subfamily 1 member 8 OS=Arabid... [more]
GL15_ARATH4.331e-2737.17Germin-like protein subfamily 1 member 5 OS=Arabid... [more]
RHRE_PEA5.656e-2740.63Rhicadhesin receptor OS=Pisum sativum GN=GER1 PE=1... [more]
GL35_ORYSJ7.387e-2736.41Germin-like protein 3-5 OS=Oryza sativa subsp. jap... [more]
GL88_ORYSJ9.648e-2736.08Germin-like protein 8-8 OS=Oryza sativa subsp. jap... [more]
GL36_ORYSJ9.648e-2736.41Germin-like protein 3-6 OS=Oryza sativa subsp. jap... [more]
GL83_ORYSJ1.260e-2638.41Germin-like protein 8-3 OS=Oryza sativa subsp. jap... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-819 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417889 ID=CF417889; Name=CF417889; organism=Citrus sinensis; type=EST; length=655bp
CTTCCTCCAATGCTATGGTTAACGACTTCTGCGTCGCTGACCTAAAGCTG
TCGGATAGTCCCGCCGGCTATCCTTGCGTGCCCCCCGCTATGGTTACCGC
TGACGACTTCGTATTTTCGGGCCTCGGCGTGGCCGGAAACACCACGAGCA
TTATCAACGCGGCAGTGACACCTGCATTTGTAGCTCAATTTCCGGCCGTG
AATGGGCTCGGACTCTCCTTGGCACGCCTAGATCTTGCAAAGGGTGGCGT
AATCCCAATCCACACTCATCCAGCTGCTTCCGAAATCCTTCTTGTTGTGC
ATGGCTGCATAACTGCCGGGTTCATTTCCTCTTCAGCTAACACTGTTTAC
GTAAAGACGCTTAAGAAGGGAGATATCATGATCTTTCCACAAGGGTTGTT
GCATTTTCAAGTAAATTCCGGTGCGGACGGAGCCCTCGGTTTTGTTAGCT
TCAACAGCCCGAATCCTGGACTCCAAATCACCGATTTCGCCTTATTTGCT
AACAACTTGTCTTCCCAATTGGTGGAGCAGACCACTTTCCTTGACGATGC
TACGGTGAAGAGGCTCAAGGCTATCCTTGGTGGCACCGGCTAGGCTTATT
AGTTACCACATTCTTCATTTGTAGTTTTGAGTTCTTATTTCATTTAGTTG
CTAAT
back to top