CF417901

Overview
NameCF417901
Unique NameCF417901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417901 vs. ExPASy Swiss-Prot
Match: NCED9_ARATH (9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.663e-30
Identity = 75/187 (40.11%), Postives = 104/187 (55.61%), Query Frame = 2
Query:   89 PKNGVTSKVIDFVEKLIVKWMY------DSSQPLHYLSGNFAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKV 628
            P     + V+D VE  ++           ++ P   ++GNF PVP E P   +L V G +P+C+ G +VR G NP   PV+G+H FDGDGM+H +R  +G  +Y  RF  T+RL QE   G   F K IG+L G  G+  + +   R    ++D + G G AN  LVY +G LLA+SE D PY VKV
Sbjct:  147 PVQRTAAMVLDAVENAMISHERRRHPHPKTADPAVQIAGNFFPVP-EKPVVHNLPVTGTVPECIQGVYVRNGANPLHKPVSGHHLFDGDGMVHAVRFDNGSVSYACRFTETNRLVQERECGRPVFPKAIGELHGHLGIAKLMLFNTRGLFGLVDPTGGLGVANAGLVYFNGHLLAMSEDDLPYHVKV 332          
BLAST of CF417901 vs. ExPASy Swiss-Prot
Match: CCD4_ARATH (Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.536e-26
Identity = 68/161 (42.24%), Postives = 90/161 (55.90%), Query Frame = 2
Query:  158 SSQPLHYLSGNFAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMKIGDLKGLFGLLMVNMQMLRAKLKVLDVSY----GNGTANTALVYHHGKLLALSEADKPYAVKV 628
            S  P H LS NFAPV DE PPT    + G LP  LNG ++R GPNP+F P   YH FDGDGM+H ++I +GKAT  SR+V+T +   E+  G      +    G  G+     +      +VL   Y    G G ANT+L +   +L AL E+D PYAV++
Sbjct:  104 SVDPKHVLSDNFAPVLDELPPTDCEIIHGTLPLSLNGAYIRNGPNPQFLPRGPYHLFDGDGMLHAIKIHNGKATLCSRYVKTYKYNVEKQTGAPVMPNV--FSGFNGVTASVARGALTAARVLTGQYNPVNGIGLANTSLAFFSNRLFALGESDLPYAVRL 262          
The following BLAST results are available for this feature:
BLAST of CF417901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
NCED9_ARATH6.663e-3040.119-cis-epoxycarotenoid dioxygenase NCED9, chloropla... [more]
CCD4_ARATH1.536e-2642.24Probable carotenoid cleavage dioxygenase 4, chloro... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-831 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417901 ID=CF417901; Name=CF417901; organism=Citrus sinensis; type=EST; length=631bp
GAGAGAGAGAGAGAGAGTCATGGTGGAGAAAGAAAAGCTGGAGAACGACG
TCGTAGCACGAAATGGAATAGTGGCGGTGGATCCGAAACCGAAGAATGGA
GTGACTTCGAAAGTGATAGACTTTGTGGAGAAACTGATAGTGAAGTGGAT
GTACGATTCTTCACAGCCTCTTCATTATCTCTCCGGTAACTTCGCTCCAG
TTCCTGACGAGACTCCTCCTACTAAAGACCTCCACGTCATCGGCCATCTC
CCCGATTGCTTGAATGGGGAGTTTGTCAGGGTTGGTCCTAATCCCAAGTT
TGCCCCTGTGGCCGGATACCACTGGTTTGATGGAGATGGCATGATTCATG
GTCTGCGCATCAAAGACGGAAAGGCTACATATGTCTCCCGTTTTGTGAGG
ACTTCACGTCTTAAACAGGAAGAATTTTTCGGAGGTGCTAAATTTATGAA
GATTGGAGACCTTAAGGGGCTATTTGGATTACTCATGGTTAACATGCAAA
TGCTTAGAGCAAAGTTGAAAGTACTGGATGTTTCATATGGAAATGGGACA
GCTAATACAGCTCTTGTATATCACCATGGGAAACTTCTAGCGCTCTCAGA
GGCGGACAAACCATATGCCGTCAAAGTTCTG
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