CF417901
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417901 vs. ExPASy Swiss-Prot
Match: NCED9_ARATH (9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 6.663e-30 Identity = 75/187 (40.11%), Postives = 104/187 (55.61%), Query Frame = 2 Query: 89 PKNGVTSKVIDFVEKLIVKWMY------DSSQPLHYLSGNFAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKV 628 P + V+D VE ++ ++ P ++GNF PVP E P +L V G +P+C+ G +VR G NP PV+G+H FDGDGM+H +R +G +Y RF T+RL QE G F K IG+L G G+ + + R ++D + G G AN LVY +G LLA+SE D PY VKV Sbjct: 147 PVQRTAAMVLDAVENAMISHERRRHPHPKTADPAVQIAGNFFPVP-EKPVVHNLPVTGTVPECIQGVYVRNGANPLHKPVSGHHLFDGDGMVHAVRFDNGSVSYACRFTETNRLVQERECGRPVFPKAIGELHGHLGIAKLMLFNTRGLFGLVDPTGGLGVANAGLVYFNGHLLAMSEDDLPYHVKV 332
BLAST of CF417901 vs. ExPASy Swiss-Prot
Match: CCD4_ARATH (Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.536e-26 Identity = 68/161 (42.24%), Postives = 90/161 (55.90%), Query Frame = 2 Query: 158 SSQPLHYLSGNFAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMKIGDLKGLFGLLMVNMQMLRAKLKVLDVSY----GNGTANTALVYHHGKLLALSEADKPYAVKV 628 S P H LS NFAPV DE PPT + G LP LNG ++R GPNP+F P YH FDGDGM+H ++I +GKAT SR+V+T + E+ G + G G+ + +VL Y G G ANT+L + +L AL E+D PYAV++ Sbjct: 104 SVDPKHVLSDNFAPVLDELPPTDCEIIHGTLPLSLNGAYIRNGPNPQFLPRGPYHLFDGDGMLHAIKIHNGKATLCSRYVKTYKYNVEKQTGAPVMPNV--FSGFNGVTASVARGALTAARVLTGQYNPVNGIGLANTSLAFFSNRLFALGESDLPYAVRL 262 The following BLAST results are available for this feature:
BLAST of CF417901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417901 ID=CF417901; Name=CF417901; organism=Citrus sinensis; type=EST; length=631bpback to top |