CF417904

Overview
NameCF417904
Unique NameCF417904
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length336
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_RAT (ATP synthase subunit beta, mitochondrial OS=Rattus norvegicus GN=Atp5b PE=1 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 2.085e-45
Identity = 87/111 (78.38%), Postives = 100/111 (90.09%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            EGLVRGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G +KT+ + PIH EAP F+E + EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:  117 EGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFIEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 227
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_MOUSE (ATP synthase subunit beta, mitochondrial OS=Mus musculus GN=Atp5b PE=1 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 2.085e-45
Identity = 87/111 (78.38%), Postives = 100/111 (90.09%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            EGLVRGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G +KT+ + PIH EAP F+E + EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:  117 EGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFIEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 227
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_RHIEC (ATP synthase subunit beta OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=atpD PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 3.557e-45
Identity = 89/111 (80.18%), Postives = 100/111 (90.09%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            EGLVRGQ+V++TG+PI+VPVG  TLGRIMNVIGEP+DE G L T H   IH++APA+VEQ+TE QILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   66 EGLVRGQQVIDTGAPISVPVGDETLGRIMNVIGEPVDEAGPLNTAHKRAIHQDAPAYVEQSTEAQILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 176
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_HUMAN (ATP synthase subunit beta, mitochondrial OS=Homo sapiens GN=ATP5B PE=1 SV=3)

HSP 1 Score: 179.874 bits (455), Expect = 3.557e-45
Identity = 87/111 (78.38%), Postives = 100/111 (90.09%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            EGLVRGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G +KT+ + PIH EAP F+E + EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:  117 EGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFMEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 227
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_RHIME (ATP synthase subunit beta OS=Rhizobium meliloti GN=atpD PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.035e-44
Identity = 89/111 (80.18%), Postives = 98/111 (88.29%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            EGLVRGQ+V +TG PI VPVG+ TLGRIMNVIGEP+DE G LKT     IH+EAPA+V+Q+TE QILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   93 EGLVRGQKVADTGGPIAVPVGKETLGRIMNVIGEPVDEAGPLKTSARRAIHQEAPAYVDQSTEAQILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 203
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_RHIL3 (ATP synthase subunit beta OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=atpD PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.352e-44
Identity = 89/111 (80.18%), Postives = 97/111 (87.39%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            EGLVRGQ V +TG+PI VPVG  TLGRIMNVIGEP+DE G L T H   IH++AP++VEQ+TE QILVTGIKVVDLLAPY RGGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   69 EGLVRGQEVADTGAPIMVPVGNETLGRIMNVIGEPVDEAGPLVTAHKRAIHQDAPSYVEQSTESQILVTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELINNVAKAH 179
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_BOVIN (ATP synthase subunit beta, mitochondrial OS=Bos taurus GN=ATP5B PE=1 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 1.352e-44
Identity = 87/111 (78.38%), Postives = 99/111 (89.19%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            EGLVRGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G +KT+ +  IH EAP FVE + EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:  117 EGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 227
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_SINMW (ATP synthase subunit beta OS=Sinorhizobium medicae (strain WSM419) GN=atpD PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.765e-44
Identity = 88/111 (79.28%), Postives = 99/111 (89.19%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            EGLVRGQ+V +TG+PI VPVG+ TLGRIMNVIGEP+DE G LKT     IH++APA+V+Q+TE QILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   98 EGLVRGQKVTDTGAPIAVPVGKETLGRIMNVIGEPVDEAGPLKTSARRAIHQDAPAYVDQSTEAQILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 208
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_RHILW (ATP synthase subunit beta OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=atpD PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 2.306e-44
Identity = 89/111 (80.18%), Postives = 97/111 (87.39%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            EGLVRGQ V +TG+PI VPVG  TLGRIMNVIGEP+DE G L T H   IH++AP++VEQ+TE QILVTGIKVVDLLAPY RGGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   69 EGLVRGQEVSDTGAPIMVPVGNETLGRIMNVIGEPVDEAGPLVTAHKRAIHQDAPSYVEQSTEAQILVTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELINNVAKAH 179
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_CYPCA (ATP synthase subunit beta, mitochondrial OS=Cyprinus carpio GN=atp5b PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 6.708e-44
Identity = 86/111 (77.48%), Postives = 97/111 (87.39%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            EGLVRGQ+VL+TG+PI +PVG  TLGRIMNVIGEPIDE+G + T+   PIH EAP F + + EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:  107 EGLVRGQKVLDTGAPIRIPVGPETLGRIMNVIGEPIDERGPITTKQTAPIHAEAPEFTDMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 217
The following BLAST results are available for this feature:
BLAST of CF417904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_RAT2.085e-4578.38ATP synthase subunit beta, mitochondrial OS=Rattus... [more]
ATPB_MOUSE2.085e-4578.38ATP synthase subunit beta, mitochondrial OS=Mus mu... [more]
ATPB_RHIEC3.557e-4580.18ATP synthase subunit beta OS=Rhizobium etli (strai... [more]
ATPB_HUMAN3.557e-4578.38ATP synthase subunit beta, mitochondrial OS=Homo s... [more]
ATPB_RHIME1.035e-4480.18ATP synthase subunit beta OS=Rhizobium meliloti GN... [more]
ATPB_RHIL31.352e-4480.18ATP synthase subunit beta OS=Rhizobium leguminosar... [more]
ATPB_BOVIN1.352e-4478.38ATP synthase subunit beta, mitochondrial OS=Bos ta... [more]
ATPB_SINMW1.765e-4479.28ATP synthase subunit beta OS=Sinorhizobium medicae... [more]
ATPB_RHILW2.306e-4480.18ATP synthase subunit beta OS=Rhizobium leguminosar... [more]
ATPB_CYPCA6.708e-4477.48ATP synthase subunit beta, mitochondrial OS=Cyprin... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-834 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417904 ID=CF417904; Name=CF417904; organism=Citrus sinensis; type=EST; length=336bp
TGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCTCTCCAATCA
CTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAATGTCATTGGA
GAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTGCCCAT
CCACAGAGAGGCTCCAGCATTCGTTGAGCAGGCAACTGAACAACAGATTC
TAGTCACTGGCATCAAGGTTGTTGATCTCCTTGCTCCATACCAAAGAGGA
GGGAAAATTGGGCTTTTTGGTGGTGCTGGTGTAGGAAAAACTGTGCTTAT
TATGGAACTTATTAACAATGTTGCAAAGGCTCATGG
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