CF417904

Overview
NameCF417904
Unique NameCF417904
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length336
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_RHISN (ATP synthase subunit beta OS=Rhizobium sp. (strain NGR234) GN=atpD PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 8.761e-44
Identity = 87/111 (78.38%), Postives = 98/111 (88.29%), Query Frame = 2
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            EGLVRGQ V +TG PI+VPVG+ TLGRIMNVIGEP+DE G ++T     IH++APA+VEQ+TE QILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   94 EGLVRGQSVTDTGGPISVPVGKETLGRIMNVIGEPVDEAGPVETSSRRAIHQDAPAYVEQSTEAQILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 204          
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_CHICK (ATP synthase subunit beta, mitochondrial OS=Gallus gallus GN=ATP5B PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 8.761e-44
Identity = 86/111 (77.48%), Postives = 98/111 (88.29%), Query Frame = 2
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            EGLVRGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G + T+ +  IH EAP FVE + EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:  122 EGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPITTKQFAAIHAEAPEFVEMSVEQKILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 232          
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_DROVI (ATP synthase subunit beta, mitochondrial (Fragment) OS=Drosophila virilis GN=ATPsyn-beta PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.144e-43
Identity = 87/111 (78.38%), Postives = 97/111 (87.39%), Query Frame = 2
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            EGLVRGQ+VL+TGSPI +PVG  TLGRIMNVIGEPIDE+G + +    PIH EAP FV+ + EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   94 EGLVRGQKVLDTGSPIRIPVGAETLGRIMNVIGEPIDERGPIPSAKTSPIHAEAPEFVDMSVEQEILVTGIKVVDLLAPYCKGGKIGLFGGAGVGKTVLIMELINNVAKAH 204          
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_HYPNA (ATP synthase subunit beta OS=Hyphomonas neptunium (strain ATCC 15444) GN=atpD PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 4.348e-43
Identity = 82/109 (75.23%), Postives = 96/109 (88.07%), Query Frame = 2
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK 328
            EGLVRGQ V + G+PITVPVG  TLGRIMNVIGEPIDE+G +  + Y+PIH +APAFV+QATE ++LVTGIKV+DLL PY +GGKIGLFGGAGVGKTVLIMEL+NN+AK
Sbjct:   65 EGLVRGQPVSDIGTPITVPVGPATLGRIMNVIGEPIDERGPVNADTYMPIHAQAPAFVDQATESEVLVTGIKVIDLLCPYAKGGKIGLFGGAGVGKTVLIMELVNNIAK 173          
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_RHORU (ATP synthase subunit beta OS=Rhodospirillum rubrum GN=atpD PE=1 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 7.417e-43
Identity = 83/111 (74.77%), Postives = 94/111 (84.68%), Query Frame = 2
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            EGLVRGQ+V +TG PITVPVG   LGRIMNVIGEP+DE+G + T    PIHR+AP F EQATE +ILVTGIKV+DL+APY +GGK+GLFGGAGVGKTVLI ELINNVAK H
Sbjct:   63 EGLVRGQQVTSTGGPITVPVGPQVLGRIMNVIGEPVDERGPVVTAQRYPIHRQAPTFAEQATETEILVTGIKVIDLIAPYTKGGKVGLFGGAGVGKTVLIQELINNVAKGH 173          
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_RHORT (ATP synthase subunit beta OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=atpD PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 7.417e-43
Identity = 83/111 (74.77%), Postives = 94/111 (84.68%), Query Frame = 2
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            EGLVRGQ+V +TG PITVPVG   LGRIMNVIGEP+DE+G + T    PIHR+AP F EQATE +ILVTGIKV+DL+APY +GGK+GLFGGAGVGKTVLI ELINNVAK H
Sbjct:   63 EGLVRGQQVTSTGGPITVPVGPQVLGRIMNVIGEPVDERGPVVTAQRYPIHRQAPTFAEQATETEILVTGIKVIDLIAPYTKGGKVGLFGGAGVGKTVLIQELINNVAKGH 173          
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_CAEEL (ATP synthase subunit beta, mitochondrial OS=Caenorhabditis elegans GN=atp-2 PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 7.417e-43
Identity = 85/111 (76.58%), Postives = 96/111 (86.49%), Query Frame = 2
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            EGLVRGQ V +TG PI +PVG  TLGRIMNVIGEPIDE+G + ++++  IH EAP FVE + EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:  126 EGLVRGQPVADTGDPIKIPVGPETLGRIMNVIGEPIDERGPIASKNFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 236          
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_RHOPA (ATP synthase subunit beta OS=Rhodopseudomonas palustris GN=atpD PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 9.687e-43
Identity = 84/111 (75.68%), Postives = 98/111 (88.29%), Query Frame = 2
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            EGLVRGQ V +TG+PI+VPVG  TLGRIMNVIGEP+DE+G +K+E    IH+EAPA+ +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINNVA+AH
Sbjct:   65 EGLVRGQEVTDTGAPISVPVGAGTLGRIMNVIGEPVDEQGPIKSEGLRAIHQEAPAYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVARAH 175          
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_DROME (ATP synthase subunit beta, mitochondrial OS=Drosophila melanogaster GN=ATPsyn-beta PE=1 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 9.687e-43
Identity = 85/111 (76.58%), Postives = 96/111 (86.49%), Query Frame = 2
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            EGLVRGQ+VL+TG PI +PVG  TLGRI+NVIGEPIDE+G + T+    IH EAP FV+ + EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   94 EGLVRGQKVLDTGYPIRIPVGAETLGRIINVIGEPIDERGPIDTDKTAAIHAEAPEFVQMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 204          
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_PELUB (ATP synthase subunit beta OS=Pelagibacter ubique GN=atpD PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.652e-42
Identity = 86/111 (77.48%), Postives = 95/111 (85.59%), Query Frame = 2
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            EGL RG  V  TG+PI VPVG  TLGRI+NVIGEPIDEKG++KT+   PIHR AP F +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   60 EGLKRGDEVTATGAPIQVPVGPETLGRIINVIGEPIDEKGEVKTKEKWPIHRAAPEFSDQSTETEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 170          
The following BLAST results are available for this feature:
BLAST of CF417904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_RHISN8.761e-4478.38ATP synthase subunit beta OS=Rhizobium sp. (strain... [more]
ATPB_CHICK8.761e-4477.48ATP synthase subunit beta, mitochondrial OS=Gallus... [more]
ATPB_DROVI1.144e-4378.38ATP synthase subunit beta, mitochondrial (Fragment... [more]
ATPB_HYPNA4.348e-4375.23ATP synthase subunit beta OS=Hyphomonas neptunium ... [more]
ATPB_RHORU7.417e-4374.77ATP synthase subunit beta OS=Rhodospirillum rubrum... [more]
ATPB_RHORT7.417e-4374.77ATP synthase subunit beta OS=Rhodospirillum rubrum... [more]
ATPB_CAEEL7.417e-4376.58ATP synthase subunit beta, mitochondrial OS=Caenor... [more]
ATPB_RHOPA9.687e-4375.68ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]
ATPB_DROME9.687e-4376.58ATP synthase subunit beta, mitochondrial OS=Drosop... [more]
ATPB_PELUB1.652e-4277.48ATP synthase subunit beta OS=Pelagibacter ubique G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-834 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417904 ID=CF417904; Name=CF417904; organism=Citrus sinensis; type=EST; length=336bp
TGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCTCTCCAATCA
CTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAATGTCATTGGA
GAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTGCCCAT
CCACAGAGAGGCTCCAGCATTCGTTGAGCAGGCAACTGAACAACAGATTC
TAGTCACTGGCATCAAGGTTGTTGATCTCCTTGCTCCATACCAAAGAGGA
GGGAAAATTGGGCTTTTTGGTGGTGCTGGTGTAGGAAAAACTGTGCTTAT
TATGGAACTTATTAACAATGTTGCAAAGGCTCATGG
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