CF417904

Overview
NameCF417904
Unique NameCF417904
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length336
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_XANP2 (ATP synthase subunit beta OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=atpD PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.315e-41
Identity = 83/111 (74.77%), Postives = 94/111 (84.68%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            EGLVRG  V +TG+PI VPVG  TLGRIMNVIGEP+DE G ++ E    IH+ AP++ EQATE +ILVTGIKVVDLLAPY +GGK+GLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   62 EGLVRGLEVTDTGAPIQVPVGAGTLGRIMNVIGEPVDELGPIEAEATRGIHQPAPSYAEQATEAEILVTGIKVVDLLAPYAKGGKVGLFGGAGVGKTVLIMELINNVAKAH 172
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_GEOSL (ATP synthase subunit beta OS=Geobacter sulfurreducens GN=atpD PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.315e-41
Identity = 82/111 (73.87%), Postives = 93/111 (83.78%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GLVRGQ VL+TG  I+VPVGR TLGRI+NVIGEP+DE G +  E    IHREAPAFV+Q+T+ +   TGIKVVDLLAPY RGGKIGLFGGAGVGKTVLIMELINN+AK H
Sbjct:   68 DGLVRGQAVLDTGKQISVPVGRKTLGRILNVIGEPVDEMGPVNAEKEYGIHREAPAFVDQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELINNIAKQH 178
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_BARHE (ATP synthase subunit beta OS=Bartonella henselae GN=atpD PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.315e-41
Identity = 80/111 (72.07%), Postives = 94/111 (84.68%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GLVRGQ+V +TG+ I+VPVG  TLGRIMNVIGEP+D  G + T     IH+EAP +VEQ+T  +ILVTGIKVVDLLAPY +GGK+GLFGGAGVGKTVLIMELINN+AKAH
Sbjct:  114 DGLVRGQKVFDTGTQISVPVGEATLGRIMNVIGEPVDNVGPIATSKTRSIHQEAPEYVEQSTASEILVTGIKVVDLLAPYSKGGKVGLFGGAGVGKTVLIMELINNIAKAH 224
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB2_DINSH (ATP synthase subunit beta 2 OS=Dinoroseobacter shibae (strain DFL 12) GN=atpD2 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.315e-41
Identity = 81/111 (72.97%), Postives = 91/111 (81.98%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            EGLVRG  V +TG PIT+PVG  TLGRIMNVIGEPIDEKG ++      IH+ AP F EQ+T  +ILVTGIKV+DLLAPY +GGKIGLFGGAGVGKTVLIMELINN+AK H
Sbjct:   62 EGLVRGAEVTDTGGPITIPVGNATLGRIMNVIGEPIDEKGPVEASESRAIHQPAPEFSEQSTGSEILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAKVH 172
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_ALKOO (ATP synthase subunit beta OS=Alkaliphilus oremlandii (strain OhILAs) GN=atpD PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 6.942e-41
Identity = 81/111 (72.97%), Postives = 91/111 (81.98%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GLVRG    +TG PITVPVGR TLGRI NVIGEP+DEKG +  E   PIHR AP+F +QAT  +IL TGIKVVDL+APY +GGKIGLFGGAGVGKTVLIMELINN+AK H
Sbjct:   64 DGLVRGMEAKDTGGPITVPVGRATLGRIFNVIGEPVDEKGAVAAEAKAPIHRPAPSFEDQATSTEILETGIKVVDLIAPYLKGGKIGLFGGAGVGKTVLIMELINNIAKEH 174
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_RICBR (ATP synthase subunit beta OS=Rickettsia bellii (strain RML369-C) GN=atpD PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 9.067e-41
Identity = 81/111 (72.97%), Postives = 95/111 (85.59%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            EGLVRG  V++TGSPI++PVG  TLGRIMNV+GEPID KG +K      I++ AP+F +Q+T++ ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   64 EGLVRGMEVVDTGSPISIPVGIETLGRIMNVVGEPIDGKGKIKGSSISSIYKSAPSFTQQSTDRNILVTGIKVVDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKAH 174
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_RICB8 (ATP synthase subunit beta OS=Rickettsia bellii (strain OSU 85-389) GN=atpD PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 9.067e-41
Identity = 81/111 (72.97%), Postives = 95/111 (85.59%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            EGLVRG  V++TGSPI++PVG  TLGRIMNV+GEPID KG +K      I++ AP+F +Q+T++ ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   64 EGLVRGMEVVDTGSPISIPVGIETLGRIMNVVGEPIDGKGKIKGSSISSIYKSAPSFTQQSTDRNILVTGIKVVDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKAH 174
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_RICTY (ATP synthase subunit beta OS=Rickettsia typhi GN=atpD PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.184e-40
Identity = 80/111 (72.07%), Postives = 95/111 (85.59%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            EGL+RG  V++TG+PI +PVG  TLGRIMNV+GEPID KG++K+     I++ AP F+ Q+TE+ ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   64 EGLIRGLEVIDTGNPIHIPVGIATLGRIMNVVGEPIDGKGEIKSSTISSIYKPAPDFINQSTERDILVTGIKVVDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKAH 174
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_RICPR (ATP synthase subunit beta OS=Rickettsia prowazekii GN=atpD PE=3 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 1.184e-40
Identity = 80/111 (72.07%), Postives = 95/111 (85.59%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            EGL+RG  V++TG+PI +PVG  TLGRIMNV+GEPID KG++K+     I++ AP F+ Q+TE+ ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   64 EGLIRGLEVIDTGNPIRIPVGTETLGRIMNVVGEPIDGKGEIKSATISSIYKPAPDFINQSTERDILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 174
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_KLULA (ATP synthase subunit beta, mitochondrial OS=Kluyveromyces lactis GN=ATP2 PE=3 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 1.184e-40
Identity = 80/111 (72.07%), Postives = 94/111 (84.68%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            EGLVRG+ V +TG+PI+VPVGR TLGRI+NVIGEPIDE+G + ++   PIH + P FVEQ+T  ++L TGIKVVDLLAPY RGGKIGLFGGAGVGKTV I ELINN+AKAH
Sbjct:   95 EGLVRGENVSDTGAPISVPVGRETLGRIINVIGEPIDERGPINSKMRKPIHADPPLFVEQSTAAEVLETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAH 205
The following BLAST results are available for this feature:
BLAST of CF417904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_XANP25.315e-4174.77ATP synthase subunit beta OS=Xanthobacter autotrop... [more]
ATPB_GEOSL5.315e-4173.87ATP synthase subunit beta OS=Geobacter sulfurreduc... [more]
ATPB_BARHE5.315e-4172.07ATP synthase subunit beta OS=Bartonella henselae G... [more]
ATPB2_DINSH5.315e-4172.97ATP synthase subunit beta 2 OS=Dinoroseobacter shi... [more]
ATPB_ALKOO6.942e-4172.97ATP synthase subunit beta OS=Alkaliphilus oremland... [more]
ATPB_RICBR9.067e-4172.97ATP synthase subunit beta OS=Rickettsia bellii (st... [more]
ATPB_RICB89.067e-4172.97ATP synthase subunit beta OS=Rickettsia bellii (st... [more]
ATPB_RICTY1.184e-4072.07ATP synthase subunit beta OS=Rickettsia typhi GN=a... [more]
ATPB_RICPR1.184e-4072.07ATP synthase subunit beta OS=Rickettsia prowazekii... [more]
ATPB_KLULA1.184e-4072.07ATP synthase subunit beta, mitochondrial OS=Kluyve... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-834 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417904 ID=CF417904; Name=CF417904; organism=Citrus sinensis; type=EST; length=336bp
TGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCTCTCCAATCA
CTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAATGTCATTGGA
GAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTGCCCAT
CCACAGAGAGGCTCCAGCATTCGTTGAGCAGGCAACTGAACAACAGATTC
TAGTCACTGGCATCAAGGTTGTTGATCTCCTTGCTCCATACCAAAGAGGA
GGGAAAATTGGGCTTTTTGGTGGTGCTGGTGTAGGAAAAACTGTGCTTAT
TATGGAACTTATTAACAATGTTGCAAAGGCTCATGG
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