CF417904
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_ERYLH (ATP synthase subunit beta OS=Erythrobacter litoralis (strain HTCC2594) GN=atpD PE=3 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 1.184e-40 Identity = 80/111 (72.07%), Postives = 94/111 (84.68%), Query Frame = 2 Query: 2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334 +GLVRGQ V+NTG+ I+VPVG TLGRIMNV+GEPID +G + + PIH EAPAFV+Q+T+ ILVTGIKV+DLLAPY +GGKIGLFGGAGVGKTVLI ELINN+AK H Sbjct: 69 DGLVRGQEVINTGAQISVPVGPKTLGRIMNVVGEPIDMRGPVGADKANPIHAEAPAFVDQSTDAAILVTGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKGH 179
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_SCEOB (ATP synthase subunit beta, chloroplastic OS=Scenedesmus obliquus GN=atpB PE=3 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 1.547e-40 Identity = 80/111 (72.07%), Postives = 91/111 (81.98%), Query Frame = 2 Query: 2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334 +GL+RG VL+TG P+ VPVG+ TLGRI NV+GEP+D G +K E LPIHR APAFV+ T I TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH Sbjct: 72 DGLMRGMEVLDTGKPLNVPVGKSTLGRIFNVLGEPVDNLGPVKNEESLPIHRTAPAFVDLDTRLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 182
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_CARHZ (ATP synthase subunit beta OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=atpD PE=3 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 1.547e-40 Identity = 75/111 (67.57%), Postives = 95/111 (85.59%), Query Frame = 2 Query: 2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334 +GLVRG +V++TG+PITVPVGR LGR++NV+GEPID KG ++++HY PIHR AP EQ+T +IL TGIKV+DLL P+ +GGKIGLFGGAGVGKTV++MELINN+AK H Sbjct: 69 DGLVRGMKVVDTGAPITVPVGRPVLGRLLNVLGEPIDGKGPVESDHYYPIHRPAPPLEEQSTRAEILETGIKVIDLLVPFLKGGKIGLFGGAGVGKTVIVMELINNIAKQH 179
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_THAPS (ATP synthase subunit beta, chloroplastic OS=Thalassiosira pseudonana GN=atpB PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 3.445e-40 Identity = 80/111 (72.07%), Postives = 92/111 (82.88%), Query Frame = 2 Query: 2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334 +GL RG ++ G+PITVPVG TLGRI NVIGEP+DE+GD+ + LPIHR+APAF E T+ I TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH Sbjct: 66 DGLKRGVEAVDLGAPITVPVGVPTLGRIFNVIGEPVDEQGDVVVDQTLPIHRDAPAFTELETKPSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 176
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_RICCK (ATP synthase subunit beta OS=Rickettsia canadensis (strain McKiel) GN=atpD PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 3.445e-40 Identity = 80/111 (72.07%), Postives = 95/111 (85.59%), Query Frame = 2 Query: 2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334 EGLVRG V++TGSPI +PVG TLGRIMNV+GE ID KG++K+ + I++ AP+F Q++E+ ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH Sbjct: 64 EGLVRGLEVVDTGSPICIPVGTATLGRIMNVVGESIDGKGEIKSSNVSSIYKPAPSFTNQSSERTILVTGIKVVDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKAH 174
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_MESSB (ATP synthase subunit beta OS=Mesorhizobium sp. (strain BNC1) GN=atpD PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 3.445e-40 Identity = 81/111 (72.97%), Postives = 93/111 (83.78%), Query Frame = 2 Query: 2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334 +GLVRGQ V +TG+PI+VPVG LGRI+NVIGEP+DE G + + IH+ AP +VEQ+TE QILVTGIKV+DLLAPY RGGKIGLFGGAGVGKTVLI ELINNVAKAH Sbjct: 108 DGLVRGQEVRDTGAPISVPVGPEMLGRIINVIGEPVDEAGPITATEFRGIHQPAPEYVEQSTEAQILVTGIKVLDLLAPYARGGKIGLFGGAGVGKTVLIQELINNVAKAH 218
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_JANSC (ATP synthase subunit beta OS=Jannaschia sp. (strain CCS1) GN=atpD PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 3.445e-40 Identity = 79/111 (71.17%), Postives = 92/111 (82.88%), Query Frame = 2 Query: 2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334 EGLVRGQ V +T PITVPVG TLGRI+NV+GEP+DE G + E IH++AP F +Q+TE ++LVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINN+AK H Sbjct: 62 EGLVRGQEVTDTDGPITVPVGPGTLGRILNVVGEPVDEGGPVDAEERRGIHQDAPEFADQSTEAEVLVTGIKVVDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAKVH 172
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_BART1 (ATP synthase subunit beta OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=atpD PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 3.445e-40 Identity = 79/111 (71.17%), Postives = 95/111 (85.59%), Query Frame = 2 Query: 2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334 +GL+RGQ+V++TG+ I+VPVG TLGRIMNVIGEP+D G + + IH+EAP +VEQ+T +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINN+AKAH Sbjct: 125 DGLMRGQKVVDTGAQISVPVGEATLGRIMNVIGEPVDNVGPIASTKTRSIHQEAPEYVEQSTVSEILVTGIKVVDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAKAH 235
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_PHATR (ATP synthase subunit beta, chloroplastic OS=Phaeodactylum tricornutum GN=atpB PE=3 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 4.500e-40 Identity = 79/111 (71.17%), Postives = 92/111 (82.88%), Query Frame = 2 Query: 2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334 +GL RG ++ G+PI VPVG TLGRI NVIGEP+DE+G++K + LPIHR+APAF E T+ I TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH Sbjct: 67 DGLKRGVEAIDLGTPINVPVGTPTLGRIFNVIGEPVDEQGEVKYDETLPIHRDAPAFTELETKPSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 177
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_MAGSM (ATP synthase subunit beta OS=Magnetococcus sp. (strain MC-1) GN=atpD PE=3 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 4.500e-40 Identity = 79/111 (71.17%), Postives = 92/111 (82.88%), Query Frame = 2 Query: 2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334 +G+VRG V +TG I VPVGR TLGRI+NV+GEP DEKG ++T LPIHR APAF +QAT +IL TGIKV+DLLAPY +GGK+GLFGGAGVGKTVLIMELINNVA+ H Sbjct: 63 DGVVRGMEVTDTGDTIRVPVGRQTLGRILNVVGEPQDEKGPVETTETLPIHRPAPAFAQQATSAEILETGIKVIDLLAPYAKGGKVGLFGGAGVGKTVLIMELINNVAQEH 173 The following BLAST results are available for this feature:
BLAST of CF417904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417904 ID=CF417904; Name=CF417904; organism=Citrus sinensis; type=EST; length=336bpback to top |