CF417904

Overview
NameCF417904
Unique NameCF417904
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length336
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_ERYLH (ATP synthase subunit beta OS=Erythrobacter litoralis (strain HTCC2594) GN=atpD PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.184e-40
Identity = 80/111 (72.07%), Postives = 94/111 (84.68%), Query Frame = 2
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GLVRGQ V+NTG+ I+VPVG  TLGRIMNV+GEPID +G +  +   PIH EAPAFV+Q+T+  ILVTGIKV+DLLAPY +GGKIGLFGGAGVGKTVLI ELINN+AK H
Sbjct:   69 DGLVRGQEVINTGAQISVPVGPKTLGRIMNVVGEPIDMRGPVGADKANPIHAEAPAFVDQSTDAAILVTGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKGH 179          
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_SCEOB (ATP synthase subunit beta, chloroplastic OS=Scenedesmus obliquus GN=atpB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.547e-40
Identity = 80/111 (72.07%), Postives = 91/111 (81.98%), Query Frame = 2
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GL+RG  VL+TG P+ VPVG+ TLGRI NV+GEP+D  G +K E  LPIHR APAFV+  T   I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   72 DGLMRGMEVLDTGKPLNVPVGKSTLGRIFNVLGEPVDNLGPVKNEESLPIHRTAPAFVDLDTRLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 182          
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_CARHZ (ATP synthase subunit beta OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=atpD PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.547e-40
Identity = 75/111 (67.57%), Postives = 95/111 (85.59%), Query Frame = 2
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GLVRG +V++TG+PITVPVGR  LGR++NV+GEPID KG ++++HY PIHR AP   EQ+T  +IL TGIKV+DLL P+ +GGKIGLFGGAGVGKTV++MELINN+AK H
Sbjct:   69 DGLVRGMKVVDTGAPITVPVGRPVLGRLLNVLGEPIDGKGPVESDHYYPIHRPAPPLEEQSTRAEILETGIKVIDLLVPFLKGGKIGLFGGAGVGKTVIVMELINNIAKQH 179          
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_THAPS (ATP synthase subunit beta, chloroplastic OS=Thalassiosira pseudonana GN=atpB PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.445e-40
Identity = 80/111 (72.07%), Postives = 92/111 (82.88%), Query Frame = 2
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GL RG   ++ G+PITVPVG  TLGRI NVIGEP+DE+GD+  +  LPIHR+APAF E  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   66 DGLKRGVEAVDLGAPITVPVGVPTLGRIFNVIGEPVDEQGDVVVDQTLPIHRDAPAFTELETKPSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 176          
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_RICCK (ATP synthase subunit beta OS=Rickettsia canadensis (strain McKiel) GN=atpD PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.445e-40
Identity = 80/111 (72.07%), Postives = 95/111 (85.59%), Query Frame = 2
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            EGLVRG  V++TGSPI +PVG  TLGRIMNV+GE ID KG++K+ +   I++ AP+F  Q++E+ ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   64 EGLVRGLEVVDTGSPICIPVGTATLGRIMNVVGESIDGKGEIKSSNVSSIYKPAPSFTNQSSERTILVTGIKVVDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKAH 174          
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_MESSB (ATP synthase subunit beta OS=Mesorhizobium sp. (strain BNC1) GN=atpD PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.445e-40
Identity = 81/111 (72.97%), Postives = 93/111 (83.78%), Query Frame = 2
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GLVRGQ V +TG+PI+VPVG   LGRI+NVIGEP+DE G +    +  IH+ AP +VEQ+TE QILVTGIKV+DLLAPY RGGKIGLFGGAGVGKTVLI ELINNVAKAH
Sbjct:  108 DGLVRGQEVRDTGAPISVPVGPEMLGRIINVIGEPVDEAGPITATEFRGIHQPAPEYVEQSTEAQILVTGIKVLDLLAPYARGGKIGLFGGAGVGKTVLIQELINNVAKAH 218          
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_JANSC (ATP synthase subunit beta OS=Jannaschia sp. (strain CCS1) GN=atpD PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.445e-40
Identity = 79/111 (71.17%), Postives = 92/111 (82.88%), Query Frame = 2
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            EGLVRGQ V +T  PITVPVG  TLGRI+NV+GEP+DE G +  E    IH++AP F +Q+TE ++LVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINN+AK H
Sbjct:   62 EGLVRGQEVTDTDGPITVPVGPGTLGRILNVVGEPVDEGGPVDAEERRGIHQDAPEFADQSTEAEVLVTGIKVVDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAKVH 172          
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_BART1 (ATP synthase subunit beta OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=atpD PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.445e-40
Identity = 79/111 (71.17%), Postives = 95/111 (85.59%), Query Frame = 2
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GL+RGQ+V++TG+ I+VPVG  TLGRIMNVIGEP+D  G + +     IH+EAP +VEQ+T  +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:  125 DGLMRGQKVVDTGAQISVPVGEATLGRIMNVIGEPVDNVGPIASTKTRSIHQEAPEYVEQSTVSEILVTGIKVVDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAKAH 235          
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_PHATR (ATP synthase subunit beta, chloroplastic OS=Phaeodactylum tricornutum GN=atpB PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 4.500e-40
Identity = 79/111 (71.17%), Postives = 92/111 (82.88%), Query Frame = 2
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GL RG   ++ G+PI VPVG  TLGRI NVIGEP+DE+G++K +  LPIHR+APAF E  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   67 DGLKRGVEAIDLGTPINVPVGTPTLGRIFNVIGEPVDEQGEVKYDETLPIHRDAPAFTELETKPSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 177          
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_MAGSM (ATP synthase subunit beta OS=Magnetococcus sp. (strain MC-1) GN=atpD PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 4.500e-40
Identity = 79/111 (71.17%), Postives = 92/111 (82.88%), Query Frame = 2
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +G+VRG  V +TG  I VPVGR TLGRI+NV+GEP DEKG ++T   LPIHR APAF +QAT  +IL TGIKV+DLLAPY +GGK+GLFGGAGVGKTVLIMELINNVA+ H
Sbjct:   63 DGVVRGMEVTDTGDTIRVPVGRQTLGRILNVVGEPQDEKGPVETTETLPIHRPAPAFAQQATSAEILETGIKVIDLLAPYAKGGKVGLFGGAGVGKTVLIMELINNVAQEH 173          
The following BLAST results are available for this feature:
BLAST of CF417904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_ERYLH1.184e-4072.07ATP synthase subunit beta OS=Erythrobacter litoral... [more]
ATPB_SCEOB1.547e-4072.07ATP synthase subunit beta, chloroplastic OS=Scened... [more]
ATPB_CARHZ1.547e-4067.57ATP synthase subunit beta OS=Carboxydothermus hydr... [more]
ATPB_THAPS3.445e-4072.07ATP synthase subunit beta, chloroplastic OS=Thalas... [more]
ATPB_RICCK3.445e-4072.07ATP synthase subunit beta OS=Rickettsia canadensis... [more]
ATPB_MESSB3.445e-4072.97ATP synthase subunit beta OS=Mesorhizobium sp. (st... [more]
ATPB_JANSC3.445e-4071.17ATP synthase subunit beta OS=Jannaschia sp. (strai... [more]
ATPB_BART13.445e-4071.17ATP synthase subunit beta OS=Bartonella tribocorum... [more]
ATPB_PHATR4.500e-4071.17ATP synthase subunit beta, chloroplastic OS=Phaeod... [more]
ATPB_MAGSM4.500e-4071.17ATP synthase subunit beta OS=Magnetococcus sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-834 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417904 ID=CF417904; Name=CF417904; organism=Citrus sinensis; type=EST; length=336bp
TGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCTCTCCAATCA
CTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAATGTCATTGGA
GAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTGCCCAT
CCACAGAGAGGCTCCAGCATTCGTTGAGCAGGCAACTGAACAACAGATTC
TAGTCACTGGCATCAAGGTTGTTGATCTCCTTGCTCCATACCAAAGAGGA
GGGAAAATTGGGCTTTTTGGTGGTGCTGGTGTAGGAAAAACTGTGCTTAT
TATGGAACTTATTAACAATGTTGCAAAGGCTCATGG
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