CF417916 | Citrus Genome Database

Overview


Name	CF417916
Unique Name	CF417916
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	434

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.161e-34
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 3

Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  HLADPVNNNAWA+ TNFVPGK
Sbjct:   86 FFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124

HSP 2 Score: 70.0922 bits (170), Expect = 1.161e-34
Identity = 35/49 (71.43%), Postives = 36/49 (73.47%), Query Frame = 2

Query:   65 EGRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            +G   E  D LYP GSFDPL    DPEAFA LK KEIKNGRLAMFSMFG
Sbjct:   37 DGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFG 85

HSP 3 Score: 45.4394 bits (106), Expect = 1.161e-34
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 1

Query:    1 ILAIWACQVVLMGAVXGYRIAG-GPLG 78
            ILAIWA QV+LMGAV GYR+AG GPLG
Sbjct:   15 ILAIWATQVILMGAVEGYRVAGDGPLG 41

[Close]

BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.895e-32
Identity = 41/48 (85.42%), Postives = 41/48 (85.42%), Query Frame = 2

Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E TDPLYP GSFDPLGLADDPEAFA LK KEIKNGRLAMFSMFG
Sbjct:  181 GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 228

HSP 2 Score: 72.7886 bits (177), Expect = 4.895e-32
Identity = 33/39 (84.62%), Postives = 33/39 (84.62%), Query Frame = 3

Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  HLADPVNNNAWAY TNFVPGK
Sbjct:  229 FFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.409e-31
Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = 2

Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E TDP+YP GSFDPLGLADDPEAFA LK KE+KNGRLAMFSMFG
Sbjct:  169 GPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 216

HSP 2 Score: 72.7886 bits (177), Expect = 1.409e-31
Identity = 33/39 (84.62%), Postives = 33/39 (84.62%), Query Frame = 3

Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  HLADPVNNNAWAY TNFVPGK
Sbjct:  217 FFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255

[Close]

BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.415e-31
Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = 2

Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E TDP+YP GSFDPLGLADDPEAFA LK KE+KNGRLAMFSMFG
Sbjct:  120 GPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 167

HSP 2 Score: 72.7886 bits (177), Expect = 1.415e-31
Identity = 33/39 (84.62%), Postives = 33/39 (84.62%), Query Frame = 3

Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  HLADPVNNNAWAY TNFVPGK
Sbjct:  168 FFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206

[Close]

BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.834e-31
Identity = 40/48 (83.33%), Postives = 40/48 (83.33%), Query Frame = 2

Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E  DPLYP GSFDPLGLADDPEAFA LK KEIKNGRLAMFSMFG
Sbjct:  175 GPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 222

HSP 2 Score: 72.7886 bits (177), Expect = 1.834e-31
Identity = 33/39 (84.62%), Postives = 33/39 (84.62%), Query Frame = 3

Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  HLADPVNNNAWAY TNFVPGK
Sbjct:  223 FFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261

[Close]

BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.387e-31
Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = 2

Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E TDP+YP GSFDPLGLA+DPEAFA LK KEIKNGRLAMFSMFG
Sbjct:  188 GPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 235

HSP 2 Score: 72.7886 bits (177), Expect = 2.387e-31
Identity = 33/39 (84.62%), Postives = 33/39 (84.62%), Query Frame = 3

Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  HLADPVNNNAWAY TNFVPGK
Sbjct:  236 FFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274

[Close]

BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.046e-31
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 2

Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E TDP+YP G+FDPLGLADDP+AFA LK KEIKNGRLAMFSMFG
Sbjct:  192 GPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFG 239

HSP 2 Score: 72.7886 bits (177), Expect = 4.046e-31
Identity = 33/39 (84.62%), Postives = 33/39 (84.62%), Query Frame = 3

Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  HLADPVNNNAWAY TNFVPGK
Sbjct:  240 FFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278

[Close]

BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.049e-31
Identity = 40/48 (83.33%), Postives = 40/48 (83.33%), Query Frame = 2

Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E  DPLYP GSFDPLGLADDPEAFA LK KEIKNGRLAMFSMFG
Sbjct:  181 GPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 228

HSP 2 Score: 71.633 bits (174), Expect = 4.049e-31
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 3

Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  HLADPVNNNAW+Y TNFVPGK
Sbjct:  229 FFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267

[Close]

BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.050e-31
Identity = 39/48 (81.25%), Postives = 40/48 (83.33%), Query Frame = 2

Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E  DPLYP G+FDPLGLADDPEAFA LK KEIKNGRLAMFSMFG
Sbjct:  179 GPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 226

HSP 2 Score: 72.7886 bits (177), Expect = 4.050e-31
Identity = 33/39 (84.62%), Postives = 33/39 (84.62%), Query Frame = 3

Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  HLADPVNNNAWAY TNFVPGK
Sbjct:  227 FFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.272e-31
Identity = 40/48 (83.33%), Postives = 40/48 (83.33%), Query Frame = 2

Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E  DPLYP GSFDPLGLADDPEAFA LK KEIKNGRLAMFSMFG
Sbjct:  181 GPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 228

HSP 2 Score: 71.2478 bits (173), Expect = 5.272e-31
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 3

Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  HLADPVNNNAWA+ TNFVPGK
Sbjct:  229 FFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267

The following BLAST results are available for this feature:

BLAST of CF417916 vs. ExPASy Swiss-Prot

BLAST of CF417916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68


Match Name	E-value	Identity	Description
CB21_RAPSA	1.161e-34	82.05	Chlorophyll a-b binding of LHCII type 1 protein (F...	[more]
CB27_TOBAC	4.895e-32	85.42	Chlorophyll a-b binding protein 7, chloroplastic O...	[more]
CB21_CUCSA	1.409e-31	81.25	Chlorophyll a-b binding protein of LHCII type I, c...	[more]
CB22_CUCSA	1.415e-31	81.25	Chlorophyll a-b binding protein of LHCII type 1 (F...	[more]
CB22_ORYSJ	1.834e-31	83.33	Chlorophyll a-b binding protein 2, chloroplastic O...	[more]
CB2B_PINSY	2.387e-31	81.25	Chlorophyll a-b binding protein type 2 member 1B, ...	[more]
CB2A_PINSY	4.046e-31	79.17	Chlorophyll a-b binding protein type 2 member 1A, ...	[more]
CB25_PETSP	4.049e-31	83.33	Chlorophyll a-b binding protein 91R, chloroplastic...	[more]
CB21_ORYSJ	4.050e-31	81.25	Chlorophyll a-b binding protein 1, chloroplastic O...	[more]
CB2G_SOLLC	5.272e-31	83.33	Chlorophyll a-b binding protein 3C, chloroplastic ...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-846 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_F01 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417916 ID=CF417916; Name=CF417916; organism=Citrus sinensis; type=EST; length=434bp
ATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGANGG
TTACAGAATTGCTGGAGGGCCGCTCGGCTGAANTGACTGACCCATTGTAC
CCACGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTT
TGCTGANCTCAAGGNTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCT
CCATGTTTGGACTTCTTCGTTCAGGCCATTGTCACCGGCAANGGACCGNT
ANAGAACTTGNNCNACCACTTGGCCGACCCTGTNAACAACAATGCCTGGG
CCTACNCCACCAACTTTGTCCCCGGAAAGNGAGCTTCNGNTGATAACNTT
AGNANCNTGGAAATTGGAATTGANAGTGATTGGTTATTGATGTGACTCTA
TTTCAACTTGCAAAACATGTGAATTATGTAATGT