CF417961

Overview
NameCF417961
Unique NameCF417961
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417961 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.273e-21
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 2
Query:  518 CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 670
            CQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVK+
Sbjct:   14 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 64          
BLAST of CF417961 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.273e-21
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 2
Query:  518 CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 670
            CQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVK+
Sbjct:  163 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 213          
BLAST of CF417961 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.273e-21
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 2
Query:  518 CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 670
            CQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVK+
Sbjct:  163 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 213          
BLAST of CF417961 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.705e-21
Identity = 62/138 (44.93%), Postives = 76/138 (55.07%), Query Frame = 1
Query:  148 SKSVSSGSP----WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG-NPSLIHAQSILAIWALPGGLD 534
            SK+VS  S     WYGPDR  +L        E P YL GE  GDYG+D  GL   PE FAK +  E+IH RWAMLGA G + PE L + G   G EAVWFK GA +     L+Y G N  +    +++A   L GG +
Sbjct:   49 SKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAE 186          
BLAST of CF417961 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.289e-20
Identity = 55/150 (36.67%), Postives = 71/150 (47.33%), Query Frame = 1
Query:   34 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNP 477
            MA+S+   S S VG    LAPS     +G       T S  V+  + W           F G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP
Sbjct:    1 MASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP 132          

HSP 2 Score: 40.4318 bits (93), Expect = 2.289e-20
Identity = 16/25 (64.00%), Postives = 20/25 (80.00%), Query Frame = 2
Query:  596 YPGGSFDPLGLADDPEAFAELKVKK 670
            YPGG+FDPLG + DP  F ELK+K+
Sbjct:  167 YPGGAFDPLGFSKDPAKFEELKLKE 191          
BLAST of CF417961 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.556e-19
Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 1
Query:  376 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLDGSR*G 549
            ELL +NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWA    L G ++G R G
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVG 62          

HSP 2 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 2
Query:  518 CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 670
            CQVVLMG +EGYR+ GGPLGE  DPLYPG +FDPLGLADDPEA AELKVK+
Sbjct:   48 CQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKE 98          
BLAST of CF417961 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.119e-17
Identity = 39/89 (43.82%), Postives = 47/89 (52.81%), Query Frame = 1
Query:  217 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNP 477
            G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG P
Sbjct:   52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP 133          

HSP 2 Score: 41.2022 bits (95), Expect = 2.119e-17
Identity = 17/25 (68.00%), Postives = 20/25 (80.00%), Query Frame = 2
Query:  596 YPGGSFDPLGLADDPEAFAELKVKK 670
            YPGG+FDPLG + DP  F ELKVK+
Sbjct:  168 YPGGAFDPLGYSKDPAKFEELKVKE 192          
BLAST of CF417961 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.326e-15
Identity = 44/112 (39.29%), Postives = 63/112 (56.25%), Query Frame = 1
Query:  184 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 516
            PDR  +   F G  PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + +L  WA
Sbjct:   63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWA 164          
BLAST of CF417961 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.767e-15
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 2
Query:  521 QVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 670
            QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPL    DPEAFAELKVK+
Sbjct:   22 QVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKE 72          
BLAST of CF417961 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.767e-15
Identity = 47/125 (37.60%), Postives = 66/125 (52.80%), Query Frame = 1
Query:  145 GSKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 516
            GS+SV+  +    PDR  +   F G  PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q +      +    +L   + +L  WA
Sbjct:   50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWA 164          
The following BLAST results are available for this feature:
BLAST of CF417961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB2D_SOLLC1.273e-2194.12Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC1.273e-2194.12Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC1.273e-2194.12Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB26_ARATH3.705e-2144.93Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB121_HORVU2.289e-2036.67Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB22_PINSY1.556e-1979.03Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB11_SOLLC2.119e-1743.82Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB12_SOLLC2.326e-1539.29Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB21_RAPSA6.767e-1578.43Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB12_PETHY6.767e-1537.60Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-891 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-012_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417961 ID=CF417961; Name=CF417961; organism=Citrus sinensis; type=EST; length=671bp
CTAGAGCTCACCAACAACTCCGATCATTGTAAAATGGCAACCTCGACCAT
GGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTGCCCCTTCAG
GCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGC
AAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTA
CTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCC
CTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAGAAACC
TTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTT
GGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCA
AGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAG
GGCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCAGAGCAT
CTTGGCCATCTGGGCTTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGT
TACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCC
AGGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTG
CTGAGCTCAAGGTTAAGAAAT
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