CF417974 | Citrus Genome Database

Overview


Name	CF417974
Unique Name	CF417974
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	709

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF417974 vs. ExPASy Swiss-Prot
Match: HSP83_LEIDO (Heat shock protein 83 (Fragment) OS=Leishmania donovani GN=HSP83 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.815e-77
Identity = 135/195 (69.23%), Postives = 166/195 (85.13%), Query Frame = 3

Query:    3 LFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 587
            +F+  KK NNIKLYVRRVFIMDNCE+L P++LGFVKG+VDSEDLPLNISRE LQQNKILKVIRKN+VKKC+E+F E+AENKEDY +FYE F KN+KLGIHED+ N  KL E LR++ST+SG E+T+LKDYVTRMKEGQ  IYYITG+SKK +E+SPF+E+ +++G EVL+M + IDEY + Q+K+FE KK    T
Sbjct:   75 MFEPNKKRNNIKLYVRRVFIMDNCEDLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKKCLEMFDEVAENKEDYKQFYEQFGKNIKLGIHEDTANPKKLMEFLRFYSTESGLEMTTLKDYVTRMKEGQKSIYYITGDSKKKLESSPFIEQARRRGLEVLFMTEPIDEYVMQQVKDFEDKKFACLT 269

[Close]

BLAST of CF417974 vs. ExPASy Swiss-Prot
Match: HSP83_LEIIN (Heat shock protein 83-1 OS=Leishmania infantum GN=HSP83-1 PE=3 SV=2)

HSP 1 Score: 287.345 bits (734), Expect = 5.280e-77
Identity = 132/195 (67.69%), Postives = 167/195 (85.64%), Query Frame = 3

Query:    3 LFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 587
            +F+  KK NNIKLYVRRVFIMDNCE+L P++LGFVKG+VDSEDLPLNISRE LQQNKILKVIRKN+VKKC+E+F E+AENKEDY +FYE F KN+KLGIH+D+ N+ KL E +R++S++SG+E+T+LKDYVTRMK GQ  IYYITG+SKK +E+SPF+E+ K++G EVL+M + IDEY + Q+K+FE KK    T
Sbjct:  322 MFEPNKKRNNIKLYVRRVFIMDNCEDLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKKCLEMFDEVAENKEDYKQFYEQFGKNIKLGIHQDTANRKKLMEFVRFYSSESGEEMTTLKDYVTRMKAGQKSIYYITGDSKKKLESSPFIEQAKRRGLEVLFMTEPIDEYVMQQVKDFEDKKFACLT 516

[Close]

BLAST of CF417974 vs. ExPASy Swiss-Prot
Match: HSP83_LEIAM (Heat shock protein 83 OS=Leishmania amazonensis GN=HSP83 PE=3 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 5.280e-77
Identity = 133/195 (68.21%), Postives = 167/195 (85.64%), Query Frame = 3

Query:    3 LFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 587
            + +  KK NNIKLYVRRVFIMDNCE+L P++LGFVKG+VDSEDLPLNISRE LQQNKILKVIRKN+VKKC+E+F+E+AENKEDY +FYE F KN+KLGIHED+ N+ KL ELLR++ST+SG+ +T+LKDYVTRMK  QN IYYITG+SKK +E+SPF+E+ K++G+EVL+M +  DEY + Q+K+FE KK    T
Sbjct:  323 MLEPNKKRNNIKLYVRRVFIMDNCEDLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKKCLEMFEEVAENKEDYKQFYEQFGKNIKLGIHEDTANRKKLMELLRFYSTESGEVMTTLKDYVTRMKAEQNSIYYITGDSKKKLESSPFIEQAKRRGFEVLFMTEPYDEYVMQQVKDFEDKKFACLT 517

[Close]

BLAST of CF417974 vs. ExPASy Swiss-Prot
Match: HSP90_CAEBR (Heat shock protein 90 OS=Caenorhabditis briggsae GN=daf-21 PE=3 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 6.896e-77
Identity = 140/195 (71.79%), Postives = 168/195 (86.15%), Query Frame = 3

Query:    3 LFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 587
            LF+ +K  N+IKLYVRRVFIM+NCEEL+PEYL F+KG+VDSEDLPLNISRE LQQ+KILKVIRKNLVKKC+ELF EIAE+K+++ KFYE F KNLKLGIHEDSTN+ KL+E LRY +T +G+E TSLK+YV+RMKE Q  IYYITGESK+ V  S F+E++K +G+EVLYM D IDEY V QLKE++GKKLVS T
Sbjct:  326 LFENKKSKNSIKLYVRRVFIMENCEELMPEYLNFIKGVVDSEDLPLNISREMLQQSKILKVIRKNLVKKCMELFDEIAEDKDNFKKFYEQFGKNLKLGIHEDSTNRKKLSEFLRY-ATSAGEEPTSLKEYVSRMKENQTQIYYITGESKEVVAASAFVERVKSRGFEVLYMCDPIDEYCVQQLKEYDGKKLVSVT 519

[Close]

BLAST of CF417974 vs. ExPASy Swiss-Prot
Match: HSP90_SCHPO (Heat shock protein 90 homolog OS=Schizosaccharomyces pombe GN=swo1 PE=1 SV=2)

HSP 1 Score: 285.804 bits (730), Expect = 1.536e-76
Identity = 136/195 (69.74%), Postives = 171/195 (87.69%), Query Frame = 3

Query:    3 LFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 587
            LF+ ++K NNIKLYVRRVFI D+CEELIPE+LGF+KG+VDSEDLPLN+SRE LQQNKI+KVIRKNLV++C+++F EIAE+KE++  FY++FSKNLKLGIHED+ N+  LA+LLRY+S  S D+L SL+DY+T+M E Q +IY+ITGESK+AVENSPFLE  + K ++VL+MVD IDEYAV QLKEFEGKKLV+ T
Sbjct:  326 LFEAKRKKNNIKLYVRRVFITDDCEELIPEWLGFIKGVVDSEDLPLNLSREMLQQNKIMKVIRKNLVRRCLDMFNEIAEDKENFKTFYDAFSKNLKLGIHEDAANRPALAKLLRYNSLNSPDDLISLEDYITKMPEHQKNIYFITGESKQAVENSPFLEIFRAKKFDVLFMVDPIDEYAVTQLKEFEGKKLVNIT 520

[Close]

BLAST of CF417974 vs. ExPASy Swiss-Prot
Match: HSP90_CAEEL (Heat shock protein 90 OS=Caenorhabditis elegans GN=daf-21 PE=1 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 2.620e-76
Identity = 139/195 (71.28%), Postives = 166/195 (85.13%), Query Frame = 3

Query:    3 LFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 587
            LF+ +K  N+IKLYVRRVFIM+NCEEL+PEYL F+KG+VDSEDLPLNISRE LQQ+KILKVIRKNLVKKC+EL  E+AE+K+++ KFYE F KNLKLGIHEDSTN+ KL++ LRY ST +GDE TSLK+YV+RMKE Q  IYYITGESK  V  S F+E++K +G+EVLYM D IDEY V QLKE++GKKLVS T
Sbjct:  322 LFENKKSKNSIKLYVRRVFIMENCEELMPEYLNFIKGVVDSEDLPLNISREMLQQSKILKVIRKNLVKKCMELIDEVAEDKDNFKKFYEQFGKNLKLGIHEDSTNRKKLSDFLRY-STSAGDEPTSLKEYVSRMKENQTQIYYITGESKDVVAASAFVERVKSRGFEVLYMCDPIDEYCVQQLKEYDGKKLVSVT 515

[Close]

BLAST of CF417974 vs. ExPASy Swiss-Prot
Match: HSP83_DROPS (Heat shock protein 83 OS=Drosophila pseudoobscura pseudoobscura GN=Hsp83 PE=3 SV=2)

HSP 1 Score: 285.034 bits (728), Expect = 2.620e-76
Identity = 133/195 (68.21%), Postives = 165/195 (84.62%), Query Frame = 3

Query:    3 LFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 587
            LF+ +KK NNIKLYVRRVFIMDNCE+LIPEYL F+KG+VDSEDLPLNISRE LQQNK+LKVIRKNLVKK +EL +E+ E+KE+Y KFYE FSKNLKLG+HEDS N+ KLA+ LR+H++ SGD+  SL DYV+RMKE Q  +Y+ITGESK  V NS F+E++K +G+EV+YM + IDEY +  LKE++GK+LVS T
Sbjct:  336 LFENQKKRNNIKLYVRRVFIMDNCEDLIPEYLNFIKGVVDSEDLPLNISREMLQQNKVLKVIRKNLVKKTMELIEELTEDKENYKKFYEQFSKNLKLGVHEDSNNRAKLADFLRFHTSASGDDFCSLSDYVSRMKENQKHVYFITGESKDQVSNSAFVERVKARGFEVVYMTEPIDEYVIQHLKEYKGKQLVSVT 530

[Close]

BLAST of CF417974 vs. ExPASy Swiss-Prot
Match: HSP90_ASPFU (Heat shock protein 90 OS=Aspergillus fumigatus GN=hsp90 PE=1 SV=3)

HSP 1 Score: 284.648 bits (727), Expect = 3.422e-76
Identity = 139/195 (71.28%), Postives = 166/195 (85.13%), Query Frame = 3

Query:    3 LFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 587
            LF+T+K  NNIKLYVRRVFI D+  +LIPE+LGF+KG+VDSEDLPLN+SRETLQQNKI+KVI+KN+VKK +ELF EIAE++E ++KFY +FSKN+KLGIHED+ N+  LA+LLRY STKSGDE TSL DYVTRM E Q  IYYITGES KAV  SPFL+ LK+K +EVL++VD IDEYA  QLKEF+GKKLV  T
Sbjct:  328 LFETKKTKNNIKLYVRRVFITDDATDLIPEWLGFIKGVVDSEDLPLNLSRETLQQNKIMKVIKKNIVKKTLELFNEIAEDREQFDKFYSAFSKNIKLGIHEDAQNRQTLAKLLRYQSTKSGDEATSLADYVTRMPEHQKQIYYITGESIKAVAKSPFLDSLKQKNFEVLFLVDPIDEYAFTQLKEFDGKKLVDIT 522

[Close]

BLAST of CF417974 vs. ExPASy Swiss-Prot
Match: HSP83_DROAV (Heat shock protein 83 OS=Drosophila auraria GN=Hsp83 PE=3 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 5.837e-76
Identity = 132/195 (67.69%), Postives = 165/195 (84.62%), Query Frame = 3

Query:    3 LFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 587
            LF+ +KK NNIKLYVRRVFIMDNCE+LIPEYL F+KG+VDSEDLPLNISRE LQQNK+LKVIRKNLVKK +EL +E+ E+KE+Y KFY+ FSKNLKLG+HEDS N+ KLA+ LR+H++ SGD+  SL DYV+RMKE Q  +Y+ITGESK  V NS F+E++K +G+EV+YM + IDEY +  LKE++GK+LVS T
Sbjct:  335 LFENQKKRNNIKLYVRRVFIMDNCEDLIPEYLNFIKGVVDSEDLPLNISREMLQQNKVLKVIRKNLVKKTMELIEELTEDKENYKKFYDQFSKNLKLGVHEDSNNRAKLADFLRFHTSASGDDFCSLSDYVSRMKENQKHVYFITGESKDQVSNSAFVERVKARGFEVVYMTEPIDEYVIQHLKEYKGKQLVSVT 529

[Close]

BLAST of CF417974 vs. ExPASy Swiss-Prot
Match: HSP83_DROME (Heat shock protein 83 OS=Drosophila melanogaster GN=Hsp83 PE=1 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 2.897e-75
Identity = 131/195 (67.18%), Postives = 165/195 (84.62%), Query Frame = 3

Query:    3 LFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 587
            LF+ +KK NNIKLYVRRVFIMDNCE+LIPEYL F+KG+VDSEDLPLNISRE LQQNK+LKVIRKNLVKK +EL +E+ E+KE+Y KFY+ FSKNLKLG+HEDS N+ KLA+ LR+H++ SGD+  SL DYV+RMK+ Q  +Y+ITGESK  V NS F+E++K +G+EV+YM + IDEY +  LKE++GK+LVS T
Sbjct:  336 LFENQKKRNNIKLYVRRVFIMDNCEDLIPEYLNFMKGVVDSEDLPLNISREMLQQNKVLKVIRKNLVKKTMELIEELTEDKENYKKFYDQFSKNLKLGVHEDSNNRAKLADFLRFHTSASGDDFCSLADYVSRMKDNQKHVYFITGESKDQVSNSAFVERVKARGFEVVYMTEPIDEYVIQHLKEYKGKQLVSVT 530

The following BLAST results are available for this feature:

BLAST of CF417974 vs. ExPASy Swiss-Prot

BLAST of CF417974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381


Match Name	E-value	Identity	Description
HSP83_LEIDO	1.815e-77	69.23	Heat shock protein 83 (Fragment) OS=Leishmania don...	[more]
HSP83_LEIIN	5.280e-77	67.69	Heat shock protein 83-1 OS=Leishmania infantum GN=...	[more]
HSP83_LEIAM	5.280e-77	68.21	Heat shock protein 83 OS=Leishmania amazonensis GN...	[more]
HSP90_CAEBR	6.896e-77	71.79	Heat shock protein 90 OS=Caenorhabditis briggsae G...	[more]
HSP90_SCHPO	1.536e-76	69.74	Heat shock protein 90 homolog OS=Schizosaccharomyc...	[more]
HSP90_CAEEL	2.620e-76	71.28	Heat shock protein 90 OS=Caenorhabditis elegans GN...	[more]
HSP83_DROPS	2.620e-76	68.21	Heat shock protein 83 OS=Drosophila pseudoobscura ...	[more]
HSP90_ASPFU	3.422e-76	71.28	Heat shock protein 90 OS=Aspergillus fumigatus GN=...	[more]
HSP83_DROAV	5.837e-76	67.69	Heat shock protein 83 OS=Drosophila auraria GN=Hsp...	[more]
HSP83_DROME	2.897e-75	67.18	Heat shock protein 83 OS=Drosophila melanogaster G...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_115000-904 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-012_C02 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417974 ID=CF417974; Name=CF417974; organism=Citrus sinensis; type=EST; length=709bp
ATCTCTTTGACACAAGGAAGAAGCCCAATAATATCAAGCTCTACGTCCGC
CGTGTCTTCATCATGGACAACTGTGAGGAGTTGATCCCCGAATACCTTGG
TTTTGTTAAGGGTATTGTTGATTCCGAGGATCTCCCTCTTAACATCTCAA
GAGAAACACTCCAGCAGAACAAGATCTTGAAGGTCATCCGCAAGAACTTG
GTGAAGAAGTGCATTGAGCTCTTCCAAGAGATTGCTGAGAACAAGGAAGA
TTACAACAAGTTTTATGAGTCATTCTCTAAGAACCTAAAGCTTGGTATCC
ATGAGGACTCCACCAACAAGACCAAGCTTGCTGAGCTGCTCCGATACCAT
TCCACCAAGAGTGGTGATGAGTTGACTAGCTTGAAGGATTATGTGACCAG
AATGAAGGAAGGCCAGAATGATATCTACTACATCACTGGTGAGAGCAAGA
AGGCTGTTGAGAACTCCCCATTTCTTGAGAAGCTCAAGAAGAAGGGCTAT
GAAGTGCTCTACATGGTTGATGCCATAGATGAGTACGCTGTTGGTCAGCT
CAAGGAGTTTGAGGGAAAGAAGCTTGTCTCAGCAACCAAAGAAGGTCTCA
AGCTTGACGAGAGTGAAGATGAGAAGAAGAAGAAGGNAACCTTGAAGGAG
AAATTTGAGGGTCTCTGCAAGTGGATCAAGGGATGTTTTGGGTGACAAGG
TCGAAAAAG