CF418034

Overview
NameCF418034
Unique NameCF418034
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.115e-27
Identity = 77/195 (39.49%), Postives = 105/195 (53.85%), Query Frame = 3
Query:   21 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566
            SP+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+ ++ G+      W+ AG ++ F+     ++    L H   I   W   +   G+V      + Y +    +G      YPGG F+PL  A   EA    K KEL NGRLAM +  GF VQ  VTGKGP ENL  H+SDP +N
Sbjct:   68 SPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAV------EGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNN 255          
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.115e-27
Identity = 70/194 (36.08%), Postives = 100/194 (51.55%), Query Frame = 3
Query:   21 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566
            SP+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+  + G+      W+ AG         +Y  + S +     +     ++     ++        P+ +       ++ YPGG F+PL  A   EA    K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   66 SPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGE-----AEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNN 254          
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.115e-27
Identity = 70/194 (36.08%), Postives = 100/194 (51.55%), Query Frame = 3
Query:   21 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566
            SP+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+  + G+      W+ AG         +Y  + S +     +     ++     ++        P+ +       ++ YPGG F+PL  A   EA    K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   66 SPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGE-----AEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNN 254          
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.362e-26
Identity = 76/195 (38.97%), Postives = 105/195 (53.85%), Query Frame = 3
Query:   21 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566
            SP+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+ ++ G+      W+ AG ++ F+     ++    L H   I   W   +   G+V      + Y +    +G      YPGG F+PL  A   EA    K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   69 SPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAV------EGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 256          
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.362e-26
Identity = 76/194 (39.18%), Postives = 102/194 (52.58%), Query Frame = 3
Query:   21 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566
            +P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+ +K G+      W+ AG A+ F+     ++    L H   I   W        V    + + Y +    +G      YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  HI+DP  N
Sbjct:   64 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWAT-----QVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVAN 251          
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.779e-26
Identity = 76/194 (39.18%), Postives = 104/194 (53.61%), Query Frame = 3
Query:   24 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566
            P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+ ++ G+      W+ AG ++ F+     ++    L H   I   W   +   G+V      + Y +    +G      YPGG F+PL  A   EA    K KEL NGRLAM +  GF VQ  VTGKGP ENL  HI+DP +N
Sbjct:   63 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAV------EGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNN 249          
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.035e-26
Identity = 76/191 (39.79%), Postives = 103/191 (53.93%), Query Frame = 3
Query:   24 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566
            P+YL G  PGD G+D  GL+ DPEN     + E+++ RWAMLG +G + PE+  + G+      W+ AG A+ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   75 PSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG---YRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNN 261          
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.035e-26
Identity = 75/191 (39.27%), Postives = 103/191 (53.93%), Query Frame = 3
Query:   24 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566
            P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G++     ++    P  EV    YPGG F+PL  A   EA    K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEG---YRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252          
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.035e-26
Identity = 76/198 (38.38%), Postives = 101/198 (51.01%), Query Frame = 3
Query:   24 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDP 557
            P+YL+G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+  K G+      W+ AG         +Y  + S         ++  + IL   VE   ++    P    +DPI            YPGG F+PL  A   EA    K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++DP
Sbjct:   66 PSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVE--GYRVAGGPLGEVEDPI------------YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADP 249          
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.035e-26
Identity = 76/191 (39.79%), Postives = 104/191 (54.45%), Query Frame = 3
Query:   24 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566
            P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+ ++ G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   56 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 242          
The following BLAST results are available for this feature:
BLAST of CF418034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CB28_PEA6.115e-2739.49Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_ARATH6.115e-2736.08Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH6.115e-2736.08Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB22_PEA1.362e-2638.97Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB21_LEMGI1.362e-2639.18Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_MAIZE1.779e-2639.18Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2B_PINSY3.035e-2639.79Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB29_MAIZE3.035e-2639.27Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB23_POLMU3.035e-2638.38Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB21_CUCSA3.035e-2639.79Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-964 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-012_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF418034 ID=CF418034; Name=CF418034; organism=Citrus sinensis; type=EST; length=683bp
AGTGGTTACCGGGCTTGGCCTCGCCAACTTACCTCAACGGCAGCCTCCCC
GGTGACAATGGATTTGACCCCTTGGGGCTTGCCGAGGATCCTGAGAACTT
GAAGTGGTATGTGCAAGCCGAGCTTGTGAATTCGCGCTGGGCCATGTTGG
GTGTTGTTGGAATGTTGTTGCCCGAAGTTTTCACAAAGATTGGAATTATT
AATGTTCCTCAATGGTATGATGCTGGGAAGGCTGAGTACTTTGCATCATC
ATCGACCCTTTTCGTGATCGAGTTCATCTTGTTCCACTATGTGGAGATAA
GAAGATGGCAAGACATAAAGAACCCAGGAAGTGTCAACCAAGACCCCATT
TTCAAGCAGTACAGCTTGCCTCCAAACGAAGTTGGGTACCCCGGTGGCAT
CTTCAACCCACTCAACTTTGCACCCACTGATGAGGCAAAGGAGAAGGAGC
TTGCCAATGGGAGATTGGCAATGTTGGCATTCTTGGGATTTATTGTTCAG
CACAATGTGACAGGCAAAGGGCCATTTGAAAACCTCCTGCAACATATCTC
TGACCCATGGCACAACACCATCGTCCAGACACTTAGTGGTAATTAATCAA
AGATGGATTGGCAATTCGGGATCCTGTTTCTTTCTTTTGTACCATGAATC
TGTAGTTTTTGAGTGAAATTGAGCATCAATGTA
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