CF418034
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 6.115e-27 Identity = 77/195 (39.49%), Postives = 105/195 (53.85%), Query Frame = 3 Query: 21 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566 SP+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+ W+ AG ++ F+ ++ L H I W + G+V + Y + +G YPGG F+PL A EA K KEL NGRLAM + GF VQ VTGKGP ENL H+SDP +N Sbjct: 68 SPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAV------EGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNN 255
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 6.115e-27 Identity = 70/194 (36.08%), Postives = 100/194 (51.55%), Query Frame = 3 Query: 21 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566 SP+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+ W+ AG +Y + S + + ++ ++ P+ + ++ YPGG F+PL A EA K KEL NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 66 SPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGE-----AEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNN 254
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 6.115e-27 Identity = 70/194 (36.08%), Postives = 100/194 (51.55%), Query Frame = 3 Query: 21 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566 SP+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+ W+ AG +Y + S + + ++ ++ P+ + ++ YPGG F+PL A EA K KEL NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 66 SPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGE-----AEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNN 254
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.362e-26 Identity = 76/195 (38.97%), Postives = 105/195 (53.85%), Query Frame = 3 Query: 21 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566 SP+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+ W+ AG ++ F+ ++ L H I W + G+V + Y + +G YPGG F+PL A EA K KEL NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 69 SPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAV------EGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 256
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.362e-26 Identity = 76/194 (39.18%), Postives = 102/194 (52.58%), Query Frame = 3 Query: 21 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566 +P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ +K G+ W+ AG A+ F+ ++ L H I W V + + Y + +G YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL HI+DP N Sbjct: 64 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWAT-----QVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVAN 251
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.779e-26 Identity = 76/194 (39.18%), Postives = 104/194 (53.61%), Query Frame = 3 Query: 24 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566 P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+ W+ AG ++ F+ ++ L H I W + G+V + Y + +G YPGG F+PL A EA K KEL NGRLAM + GF VQ VTGKGP ENL HI+DP +N Sbjct: 63 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAV------EGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNN 249
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.035e-26 Identity = 76/191 (39.79%), Postives = 103/191 (53.93%), Query Frame = 3 Query: 24 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566 P+YL G PGD G+D GL+ DPEN + E+++ RWAMLG +G + PE+ + G+ W+ AG A+ F+ ++ L H I W + G+V ++ P EV YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 75 PSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG---YRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNN 261
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.035e-26 Identity = 75/191 (39.27%), Postives = 103/191 (53.93%), Query Frame = 3 Query: 24 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566 P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+ W+ AG ++ F+ ++ L H I W + G++ ++ P EV YPGG F+PL A EA K KEL NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEG---YRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.035e-26 Identity = 76/198 (38.38%), Postives = 101/198 (51.01%), Query Frame = 3 Query: 24 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDP 557 P+YL+G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ K G+ W+ AG +Y + S ++ + IL VE ++ P +DPI YPGG F+PL A EA K KEL NGRLAM + GF VQ VTGKGP ENL H++DP Sbjct: 66 PSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVE--GYRVAGGPLGEVEDPI------------YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADP 249
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.035e-26 Identity = 76/191 (39.79%), Postives = 104/191 (54.45%), Query Frame = 3 Query: 24 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566 P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+ W+ AG ++ F+ ++ L H I W + G+V ++ P EV YPGG F+PL A EA K KEL NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 56 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 242 The following BLAST results are available for this feature:
BLAST of CF418034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 82
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Sequences
The
following sequences are available for this feature:
EST sequence >CF418034 ID=CF418034; Name=CF418034; organism=Citrus sinensis; type=EST; length=683bpback to top |