CF418034
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 8.831e-26 Identity = 76/192 (39.58%), Postives = 103/192 (53.65%), Query Frame = 3 Query: 21 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEV---GYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566 +P+YL G P D G+D GL+ DPE + E+++ RWAMLG +G + PE+F + GI W+ AG A+ F+ ++ L H I W + G+V ++ P EV YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 67 APSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 254
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 8.831e-26 Identity = 75/192 (39.06%), Postives = 103/192 (53.65%), Query Frame = 3 Query: 21 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566 SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+ W+ AG ++ F+ ++ L H I W + G+V ++ P EV YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 66 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 253
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25 Identity = 74/195 (37.95%), Postives = 103/195 (52.82%), Query Frame = 3 Query: 21 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566 SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+ W+ AG ++ F+ ++ L H I W + G+V + Y + +G YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 67 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV------EGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 254
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25 Identity = 74/195 (37.95%), Postives = 103/195 (52.82%), Query Frame = 3 Query: 21 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566 SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+ W+ AG ++ F+ ++ L H I W + G+V + Y + +G YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 65 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV------EGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25 Identity = 74/191 (38.74%), Postives = 103/191 (53.93%), Query Frame = 3 Query: 24 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566 P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+ W+ AG A+ F+ ++ L H I W + G++ ++ P EV YPGG F+PL A +A K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 79 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEG---YRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNN 265
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25 Identity = 74/191 (38.74%), Postives = 103/191 (53.93%), Query Frame = 3 Query: 24 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566 P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+ W+ AG A+ F+ ++ L H I W + G++ ++ P EV YPGG F+PL A +A K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 79 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEG---YRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNN 265
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25 Identity = 75/192 (39.06%), Postives = 103/192 (53.65%), Query Frame = 3 Query: 21 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566 SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+ W+ AG ++ F+ ++ L H I W + G+V ++ P EV YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 65 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG---YRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2) HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25 Identity = 73/201 (36.32%), Postives = 100/201 (49.75%), Query Frame = 3 Query: 24 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566 P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ +K G+ W+ AG +Y + + ++ + +L +VE R P DPI YPGG F+PL A +A K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP N Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGG--GPLGEGLDPI------------YPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVAN 252
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.506e-25 Identity = 76/192 (39.58%), Postives = 102/192 (53.12%), Query Frame = 3 Query: 21 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566 +P+YLNG GD G+D GL+ DPE + E++++RWAMLG +G L PE+ K G+ W+ AG A+ F+ ++ L H I W + G+V ++ P EV YPGG F+PL A E K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP N Sbjct: 68 TPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVAN 255
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.506e-25 Identity = 74/200 (37.00%), Postives = 103/200 (51.50%), Query Frame = 3 Query: 21 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINV--PQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIK------------NPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566 +P YL G PGD G+D GL+ DP+ Y + EL+++RWA+LG +G+L PE+ ++ + P W+ AG A+ FA ++ L H I ++ N GS + L + YPGG F+PL A E K KE+ NGRLAM + LGF VQ VTGKGP +NL H++DP N Sbjct: 50 TPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAG-AQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGS--------EGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVN 240 The following BLAST results are available for this feature:
BLAST of CF418034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 82
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Sequences
The
following sequences are available for this feature:
EST sequence >CF418034 ID=CF418034; Name=CF418034; organism=Citrus sinensis; type=EST; length=683bpback to top |