CF418034

Overview
NameCF418034
Unique NameCF418034
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.459e-20
Identity = 71/202 (35.15%), Postives = 96/202 (47.52%), Query Frame = 3
Query:   21 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566
            +P+YL G   G        L+ DPE      + E+++SRWAMLG +G + PE+  + G+      W+ AG         +Y  + S         ++  + IL   VE   ++    P     DPI            YPGG F+PL  A   EA    K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   64 APSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVE--GYRIAGGPLGEVTDPI------------YPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 243          
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.329e-18
Identity = 71/232 (30.60%), Postives = 94/232 (40.52%), Query Frame = 3
Query:    3 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKW-------------------------------------------YVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSS-----------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGRLAMLAFLGFIVQHNVTGKGP 524
            W PG   P +L+GS+ GD GFDP GL +  E L++                                           + + EL++ RWAMLG +G +  E  T I       W DAGK E    SS           TL  IE ++  Y+E +R  +                 L P +  YPGG F+PL  A      D  K  E+ + RLAM+AFL F +Q   TGKGP
Sbjct:   59 WFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIA------WQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSE-----------------LDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGP 267          
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 68/228 (29.82%), Postives = 97/228 (42.54%), Query Frame = 3
Query:    3 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPE---------------NLKWYVQA------------------------------ELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDE-----AKEKELANGRLAMLAFLGFIVQHNVTGKGPFENL 536
            WLP    P +L+GSLPGD GFDPLGL++  E               N K  V+A                              EL++ RWAML  +G L+ E  T +       W +AGK E   +S     + F +   +    W ++   G       ++     P +  YPGG+F+PL  A  DE      K  E+ + RLAM++F G+ VQ   TG+G   +L
Sbjct:   53 WLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVS------WVEAGKVELDGASYAGLSLPFSITQLI----WIEVILVGGAE---FYRNSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSL 267          
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.786e-17
Identity = 62/195 (31.79%), Postives = 89/195 (45.64%), Query Frame = 3
Query:    3 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLS 587
            W PG   P +L G  P D GFDPL +A DP        +E+ ++R +ML +VG ++PE+  K        W++ G      +S     + FIL        +   +  G  N D      S       YPG  F+PL    T +  ++E+ NGRLAM   LG   Q+  TG+ P  NL  H ++P    I  TL+
Sbjct:  162 WFPGAQPPAHLTGEYPADRGFDPLSVAADPTVYARMRVSEVFHARLSMLAIVGSIVPELLGK------GAWFEVG------NSVDGIKLGFILMAIAAPTEYW--RGNGGFNWDKGTADRS-------YPG--FDPLKL--TTDYTKREIKNGRLAMTGLLGLTFQYLATGESPLANLAAHFANPVGANITTTLA 331          
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.546e-14
Identity = 63/195 (32.31%), Postives = 92/195 (47.18%), Query Frame = 3
Query:   24 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLS 587
            P+YL G  PGD G+D  GL+  PE      + E+++SR AM   +G + PE+ + +G       W+ AG A+ F+     ++    L H   I   W   +   G+V    I +       +  YPG  F+ L  A   EA    K KEL NGRLAM +  GF VQ  V+ K   ENL  H+    +N  +  ++
Sbjct:   70 PSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYPGS-FDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVT 262          
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.258e-12
Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = 3
Query:  387 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  HI+DP +N
Sbjct:  191 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNN 254          
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.258e-12
Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = 3
Query:  387 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  HI+DP +N
Sbjct:  191 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNN 254          
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 3
Query:  387 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   40 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 103          
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 3
Query:  387 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  189 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252          
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 3
Query:  387 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  189 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252          
The following BLAST results are available for this feature:
BLAST of CF418034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CB22_SOYBN1.459e-2035.15Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB4C_ARATH2.329e-1830.60Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB29_CHLRE1.156e-1729.82Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
LH15_EUGGR9.786e-1731.79Light-harvesting complex I LH35 proteins (Fragment... [more]
CB2_MALDO4.546e-1432.31Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2F_SOLLC3.258e-1257.81Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC3.258e-1257.81Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC5.557e-1256.25Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC5.557e-1256.25Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC5.557e-1256.25Chlorophyll a-b binding protein 1A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-964 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-012_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF418034 ID=CF418034; Name=CF418034; organism=Citrus sinensis; type=EST; length=683bp
AGTGGTTACCGGGCTTGGCCTCGCCAACTTACCTCAACGGCAGCCTCCCC
GGTGACAATGGATTTGACCCCTTGGGGCTTGCCGAGGATCCTGAGAACTT
GAAGTGGTATGTGCAAGCCGAGCTTGTGAATTCGCGCTGGGCCATGTTGG
GTGTTGTTGGAATGTTGTTGCCCGAAGTTTTCACAAAGATTGGAATTATT
AATGTTCCTCAATGGTATGATGCTGGGAAGGCTGAGTACTTTGCATCATC
ATCGACCCTTTTCGTGATCGAGTTCATCTTGTTCCACTATGTGGAGATAA
GAAGATGGCAAGACATAAAGAACCCAGGAAGTGTCAACCAAGACCCCATT
TTCAAGCAGTACAGCTTGCCTCCAAACGAAGTTGGGTACCCCGGTGGCAT
CTTCAACCCACTCAACTTTGCACCCACTGATGAGGCAAAGGAGAAGGAGC
TTGCCAATGGGAGATTGGCAATGTTGGCATTCTTGGGATTTATTGTTCAG
CACAATGTGACAGGCAAAGGGCCATTTGAAAACCTCCTGCAACATATCTC
TGACCCATGGCACAACACCATCGTCCAGACACTTAGTGGTAATTAATCAA
AGATGGATTGGCAATTCGGGATCCTGTTTCTTTCTTTTGTACCATGAATC
TGTAGTTTTTGAGTGAAATTGAGCATCAATGTA
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