CF418034
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.459e-20 Identity = 71/202 (35.15%), Postives = 96/202 (47.52%), Query Frame = 3 Query: 21 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566 +P+YL G G L+ DPE + E+++SRWAMLG +G + PE+ + G+ W+ AG +Y + S ++ + IL VE ++ P DPI YPGG F+PL A EA K KEL NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 64 APSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVE--GYRIAGGPLGEVTDPI------------YPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 243
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.329e-18 Identity = 71/232 (30.60%), Postives = 94/232 (40.52%), Query Frame = 3 Query: 3 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKW-------------------------------------------YVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSS-----------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGRLAMLAFLGFIVQHNVTGKGP 524 W PG P +L+GS+ GD GFDP GL + E L++ + + EL++ RWAMLG +G + E T I W DAGK E SS TL IE ++ Y+E +R + L P + YPGG F+PL A D K E+ + RLAM+AFL F +Q TGKGP Sbjct: 59 WFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIA------WQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSE-----------------LDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGP 267
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3) HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17 Identity = 68/228 (29.82%), Postives = 97/228 (42.54%), Query Frame = 3 Query: 3 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPE---------------NLKWYVQA------------------------------ELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDE-----AKEKELANGRLAMLAFLGFIVQHNVTGKGPFENL 536 WLP P +L+GSLPGD GFDPLGL++ E N K V+A EL++ RWAML +G L+ E T + W +AGK E +S + F + + W ++ G ++ P + YPGG+F+PL A DE K E+ + RLAM++F G+ VQ TG+G +L Sbjct: 53 WLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVS------WVEAGKVELDGASYAGLSLPFSITQLI----WIEVILVGGAE---FYRNSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSL 267
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 9.786e-17 Identity = 62/195 (31.79%), Postives = 89/195 (45.64%), Query Frame = 3 Query: 3 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLS 587 W PG P +L G P D GFDPL +A DP +E+ ++R +ML +VG ++PE+ K W++ G +S + FIL + + G N D S YPG F+PL T + ++E+ NGRLAM LG Q+ TG+ P NL H ++P I TL+ Sbjct: 162 WFPGAQPPAHLTGEYPADRGFDPLSVAADPTVYARMRVSEVFHARLSMLAIVGSIVPELLGK------GAWFEVG------NSVDGIKLGFILMAIAAPTEYW--RGNGGFNWDKGTADRS-------YPG--FDPLKL--TTDYTKREIKNGRLAMTGLLGLTFQYLATGESPLANLAAHFANPVGANITTTLA 331
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.546e-14 Identity = 63/195 (32.31%), Postives = 92/195 (47.18%), Query Frame = 3 Query: 24 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLS 587 P+YL G PGD G+D GL+ PE + E+++SR AM +G + PE+ + +G W+ AG A+ F+ ++ L H I W + G+V I + + YPG F+ L A EA K KEL NGRLAM + GF VQ V+ K ENL H+ +N + ++ Sbjct: 70 PSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYPGS-FDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVT 262
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.258e-12 Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = 3 Query: 387 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566 YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL HI+DP +N Sbjct: 191 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNN 254
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.258e-12 Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = 3 Query: 387 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566 YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL HI+DP +N Sbjct: 191 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNN 254
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12 Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 3 Query: 387 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566 YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 40 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 103
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12 Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 3 Query: 387 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566 YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 189 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12 Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 3 Query: 387 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566 YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 189 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252 The following BLAST results are available for this feature:
BLAST of CF418034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 82
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Sequences
The
following sequences are available for this feature:
EST sequence >CF418034 ID=CF418034; Name=CF418034; organism=Citrus sinensis; type=EST; length=683bpback to top |