CF503806

Overview
NameCF503806
Unique NameCF503806
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length272
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: GRP78_BOVIN (78 kDa glucose-regulated protein OS=Bos taurus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 4.512e-40
Identity = 80/90 (88.89%), Postives = 85/90 (94.44%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGLNV RIINEPTAAAIAYGLDK+ GEKNILVFDLGGGTFDVS+LTIDNGVFEV++TNGDTHLGGEDFDQRVME+FIKL KKK G
Sbjct:  187 DAGTIAGLNVMRIINEPTAAAIAYGLDKREGEKNILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMEHFIKLYKKKTG 276          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: HSP7C_DROME (Heat shock 70 kDa protein cognate 3 OS=Drosophila melanogaster GN=Hsc70-3 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 7.696e-40
Identity = 78/90 (86.67%), Postives = 85/90 (94.44%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG+IAGL V RIINEPTAAAIAYGLDKK GEKN+LVFDLGGGTFDVS+LTIDNGVFEV++TNGDTHLGGEDFDQRVM++FIKL KKK G
Sbjct:  186 DAGVIAGLQVMRIINEPTAAAIAYGLDKKEGEKNVLVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMDHFIKLYKKKKG 275          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: GRP78_ECHMU (78 kDa glucose-regulated protein OS=Echinococcus multilocularis GN=GRP78 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.204e-38
Identity = 75/90 (83.33%), Postives = 83/90 (92.22%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGL V RIINEPTAAAIAYGLDKK  EKNILVFDLGGGTFDVS+LTIDNGVFEV++T+GDTHLGGEDFDQR+++YF+KL KKK G
Sbjct:  185 DAGAIAGLTVLRIINEPTAAAIAYGLDKKDTEKNILVFDLGGGTFDVSLLTIDNGVFEVVATSGDTHLGGEDFDQRLIDYFVKLYKKKEG 274          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: GRP78_ECHGR (78 kDa glucose-regulated protein OS=Echinococcus granulosus GN=GRP78 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.096e-37
Identity = 74/90 (82.22%), Postives = 83/90 (92.22%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGL V RIINEPTAAAIAYGL+KK  EKNILVFDLGGGTFDVS+LTIDNGVFEV++T+GDTHLGGEDFDQR+++YF+KL KKK G
Sbjct:  185 DAGAIAGLTVLRIINEPTAAAIAYGLEKKDTEKNILVFDLGGGTFDVSLLTIDNGVFEVVATSGDTHLGGEDFDQRLIDYFVKLYKKKEG 274          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: GRP78_ASPNG (78 kDa glucose-regulated protein homolog OS=Aspergillus niger GN=bipA PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.962e-35
Identity = 68/89 (76.40%), Postives = 81/89 (91.01%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKH 268
            DAG IAGLNV R++NEPTAAAIAYGLDK G E+ ++V+DLGGGTFDVS+L+IDNGVFEVL+T GDTHLGGEDFDQRVM++F+KL  KK+
Sbjct:  205 DAGTIAGLNVLRVVNEPTAAAIAYGLDKTGDERQVIVYDLGGGTFDVSLLSIDNGVFEVLATAGDTHLGGEDFDQRVMDHFVKLYNKKN 293          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: GRP78_ASPKA (78 kDa glucose-regulated protein homolog OS=Aspergillus kawachi GN=bipA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.962e-35
Identity = 68/89 (76.40%), Postives = 81/89 (91.01%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKH 268
            DAG IAGLNV R++NEPTAAAIAYGLDK G E+ ++V+DLGGGTFDVS+L+IDNGVFEVL+T GDTHLGGEDFDQRVM++F+KL  KK+
Sbjct:  205 DAGTIAGLNVLRVVNEPTAAAIAYGLDKTGDERQVIVYDLGGGTFDVSLLSIDNGVFEVLATAGDTHLGGEDFDQRVMDHFVKLYNKKN 293          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: GRP78_ASPAW (78 kDa glucose-regulated protein homolog OS=Aspergillus awamori GN=bipA PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.962e-35
Identity = 68/89 (76.40%), Postives = 81/89 (91.01%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKH 268
            DAG IAGLNV R++NEPTAAAIAYGLDK G E+ ++V+DLGGGTFDVS+L+IDNGVFEVL+T GDTHLGGEDFDQRVM++F+KL  KK+
Sbjct:  205 DAGTIAGLNVLRVVNEPTAAAIAYGLDKTGDERQVIVYDLGGGTFDVSLLSIDNGVFEVLATAGDTHLGGEDFDQRVMDHFVKLYNKKN 293          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: GRP78_NEUCR (78 kDa glucose-regulated protein homolog OS=Neurospora crassa GN=grp78 PE=3 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 2.562e-35
Identity = 69/90 (76.67%), Postives = 80/90 (88.89%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG+IAGLNV RI+NEPTAAAIAYGLDK G E+ I+V+DLGGGTFDVS+L+I+ GVFEVLST GDTHLGGEDFDQR++ +F KL  KKHG
Sbjct:  195 DAGMIAGLNVLRIVNEPTAAAIAYGLDKTGEERQIIVYDLGGGTFDVSLLSIEQGVFEVLSTAGDTHLGGEDFDQRIINHFAKLFNKKHG 284          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: HSP70_SCHMA (Heat shock 70 kDa protein homolog OS=Schistosoma mansoni PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 2.833e-34
Identity = 69/90 (76.67%), Postives = 82/90 (91.11%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKK-GGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKH 268
            DAG IAGLNV RIINEPTAAAIAYGLDKK GGE+N+L+FDLGGGTFDVSILTI++G+FEV ST GDTHLGGEDFD R++++F+K  +KK+
Sbjct:  158 DAGAIAGLNVLRIINEPTAAAIAYGLDKKVGGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVDHFVKEFQKKY 247          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: HSP7C_CHICK (Heat shock cognate 71 kDa protein OS=Gallus gallus GN=HSPA8 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.832e-34
Identity = 70/90 (77.78%), Postives = 79/90 (87.78%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKK-GGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKH 268
            DAG IAGLNV RIINEPTAAAIAYGLDKK G E+N+L+FDLGGGTFDVSILTI+NG+FEV ST GDTHLGGEDFD R++ +FI   K+KH
Sbjct:  160 DAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNLLIFDLGGGTFDVSILTIENGIFEVKSTAGDTHLGGEDFDNRLVNHFIAEFKRKH 249          
The following BLAST results are available for this feature:
BLAST of CF503806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GRP78_BOVIN4.512e-4088.8978 kDa glucose-regulated protein OS=Bos taurus GN=... [more]
HSP7C_DROME7.696e-4086.67Heat shock 70 kDa protein cognate 3 OS=Drosophila ... [more]
GRP78_ECHMU7.204e-3883.3378 kDa glucose-regulated protein OS=Echinococcus m... [more]
GRP78_ECHGR2.096e-3782.2278 kDa glucose-regulated protein OS=Echinococcus g... [more]
GRP78_ASPNG1.962e-3576.4078 kDa glucose-regulated protein homolog OS=Asperg... [more]
GRP78_ASPKA1.962e-3576.4078 kDa glucose-regulated protein homolog OS=Asperg... [more]
GRP78_ASPAW1.962e-3576.4078 kDa glucose-regulated protein homolog OS=Asperg... [more]
GRP78_NEUCR2.562e-3576.6778 kDa glucose-regulated protein homolog OS=Neuros... [more]
HSP70_SCHMA2.833e-3476.67Heat shock 70 kDa protein homolog OS=Schistosoma m... [more]
HSP7C_CHICK4.832e-3477.78Heat shock cognate 71 kDa protein OS=Gallus gallus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-292 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503806 ID=CF503806; Name=CF503806; organism=Citrus sinensis; type=EST; length=272bp
GGATGCTGGTATTATTGCTGGGCTAAATGTTGCTAGGATTATCAATGAAC
CAACAGCCGCTGCCATTGCCTATGGATTGGACAAGAAAGGTGGTGAGAAG
AACATTCTTGTCTTTGACCTTGGTGGTGGTACATTTGATGTCAGTATCTT
GACAATTGACAATGGTGTTTTCGAGGTTCTTTCCACAAATGGAGACACTC
ATTTGGGAGGTGAGGACTTTGATCAGAGGGTTATGGAGTACTTTATTAAA
TTGATCAAGAAGAAGCATGGAA
back to top